CSPI01G16760 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16760
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Location	Chr1 : 12405192 .. 12406719 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCAACCAATTCCGGTGGTCTTTTCTGTCAAATTCTCTTTCACTCCCTCAATTTCTTCCCTGTTTTTCCAAACCCTAAACACTCTCTGCTCTTCAAATATTTCATTACTTTAATCTCAAATCCTCCACTATTATTCCTCAATATTCAATCTCATCATATTTATTCTTCATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGGTAACTATTTCCCTCTTTTTTTTTTTCTATTCATTTCCCCTACGTACCTCGATCTGATTGCAAATCCGAATGTTCCGCTTTCGATGTATTTGTTTAATTGATAGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGTACGTTGTTGGGGATTTGGAATACTGAATTCCGTATATTAATGTATTATATATCTGTGTGTGTGTGTGTGTTGAATTGGAAACTGAAACTTATCAATTAAAGTTTGTTCAATTATACTTTATTTGGTTTCAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGGTATTCCCATCTTCTTTTGTTAACTGTTTTGGCTTTCGTTTTTGAAATTCGAACTTAGGTCCCGTTTATTCACCCAAAGGTAATTAATCAACAGTAATGTAGAAAGCGGGTCAGTTCATTATGTTTGTTGTTATCTACCGTGTTTTGTAATCAGAATGAACTCTAGATGGTAATCAAAATGAACTGTAGCTGTTAATAAAAATCCAAGAAAGATGCTAAATCTGATTATGCTTGAAAATAATGAATGACACACTACTTTTTATCCTTTTTATCTCTCACATTTACCGTTAGTATTAGAAAAGGTAAAGACAATTTTAATTAATAAACACAATTGAAAACAATTCAATTTAATTGCGATTCAGACAAATTACATTCAATGCATCAAACGGAATCCCAATATGATTAAACTCGTTTTCATTAGGGATTAGTAAAGGTGGCCTTAATGGATTTAATTTCTTGTTATCCACTTGTTTCACGTTAAAGAGAAAAAAAAAAAAAAAGATGAAAACCATTCATGAAAAACAAGTATAATCTTCAAAAAGCCAAATTGGTTGATCAAATTAAACGATTATTTCTCTGTTTGATCTGTTGTTTGTGACATTTGAGTATTAATGAGTTATATGCTGGTTCCCTTATGCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAAATAGATATGTGTAGAAAGAAATATAGAAAGATTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGAA

mRNA sequence

ATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAA

Coding sequence (CDS)

ATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAA

Homology

[Close]

BLAST of CSPI01G16760 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of CSPI01G16760 vs. TrEMBL
Match: A0A0A0LT94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 9.3e-72
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VELRCPIEE 130
           VELRCPIEE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of CSPI01G16760 vs. TrEMBL
Match: M0SE72_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS+ Y RLP QLLRLSVLKLDGSS+EV+V RTA+VA ++  +E +F E S +     IS
Sbjct: 38  RRSISYCRLPEQLLRLSVLKLDGSSYEVEVARTASVAELKMEIEDIFSE-SPDDGGCCIS 97

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVELRCP 127
           W HVWG FCLCYK  KL+DD + ++ FGIRDGDQLHF+    P
Sbjct: 98  WSHVWGQFCLCYKEHKLIDDGASLRSFGIRDGDQLHFIRHLSP 139

[Close]

BLAST of CSPI01G16760 vs. TrEMBL
Match: A0A0S3RP03_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G233300 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-25
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 16  PRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM 75
           P  H+   R+SL Y+RLP Q LRLSVLKLDGSSF +QV +TATVA ++DAVE+VF    +
Sbjct: 28  PLIHAIFARKSLFYHRLPSQPLRLSVLKLDGSSFHIQVSKTATVAELKDAVEAVFSHAPL 87

Query: 76  NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
            K    ISW HVWG FCLCY   KL+ +   ++++GI+DGDQL F+
Sbjct: 88  -KGPAKISWAHVWGQFCLCYDGQKLVTENDYLRNYGIKDGDQLRFI 132

[Close]

BLAST of CSPI01G16760 vs. TrEMBL
Match: V7CSP6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G050800g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1


Query: 16  PRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM 75
           P  H+   R+SL YNRLP   LRLSVLKLDGSSF +QV +TATVA ++DAVE+VF    +
Sbjct: 19  PLIHAIFSRKSLFYNRLPSLPLRLSVLKLDGSSFHIQVSKTATVAQLKDAVEAVFSHAPL 78

Query: 76  NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
            K    ISW HVWG FCLCY   KL+ +   ++++GI+DGDQL F+
Sbjct: 79  -KGPAQISWAHVWGQFCLCYDGQKLVTENDYLRNYGIKDGDQLRFI 123

[Close]

BLAST of CSPI01G16760 vs. TrEMBL
Match: U5D6V9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00101090 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-24
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS  Y +LP   LRLSVLKLDGSSFEVQVE+TA V  ++ A+E VF + S  +    IS
Sbjct: 36  RRSFSYAKLPQPRLRLSVLKLDGSSFEVQVEKTALVFELKQAIEEVFSQ-SPKESHGKIS 95

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
           W HVWGHFCL Y  +KL+DDK+ ++ +GI+DGDQL F+
Sbjct: 96  WSHVWGHFCLSYDGYKLVDDKASLRSYGIKDGDQLPFI 132

[Close]

BLAST of CSPI01G16760 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     IS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
           WPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFI 121

[Close]

BLAST of CSPI01G16760 vs. TAIR10
Match: AT1G80060.1 (AT1G80060.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 7.2e-23
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 14  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVR 73
           I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 74  DAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
            AVE VF    +      ISW HVWGHFCLCY+  +L++DK+ I++ G+ DGDQLHFV
Sbjct: 81  RAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFV 136

[Close]

BLAST of CSPI01G16760 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-21
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    IS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           W HVWGHFCLC+   KL+ D   I ++G++DGD++ F
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRF 101

[Close]

BLAST of CSPI01G16760 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of CSPI01G16760 vs. NCBI nr
Match: gi|778660000|ref|XP_011655436.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-71
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VELRCPIEE 130
           VELRCPIEE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of CSPI01G16760 vs. NCBI nr
Match: gi|659086496|ref|XP_008443964.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 3.3e-70
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VELRCPIEE 130
           VELRCP+EE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of CSPI01G16760 vs. NCBI nr
Match: gi|659086494|ref|XP_008443963.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 117/125 (93.60%), Postives = 119/125 (95.20%), Query Frame = 1


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 VELRC 126
             L C
Sbjct: 124 SSLFC 128

[Close]

BLAST of CSPI01G16760 vs. NCBI nr
Match: gi|695010849|ref|XP_009392115.1| (PREDICTED: uncharacterized protein LOC103978141 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS+ Y RLP QLLRLSVLKLDGSS+EV+V RTA+VA ++  +E +F E S +     IS
Sbjct: 38  RRSISYCRLPEQLLRLSVLKLDGSSYEVEVARTASVAELKMEIEDIFSE-SPDDGGCCIS 97

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVELRCP 127
           W HVWG FCLCYK  KL+DD + ++ FGIRDGDQLHF+    P
Sbjct: 98  WSHVWGQFCLCYKEHKLIDDGASLRSFGIRDGDQLHFIRHLSP 139

[Close]

BLAST of CSPI01G16760 vs. NCBI nr
Match: gi|719981602|ref|XP_010250174.1| (PREDICTED: uncharacterized protein LOC104592485 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 57/107 (53.27%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 15  SPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMS 74
           SP  H    RRS  Y +LP QL +L++LKLDGS F+V+V R A+VA ++ A+E VF  +S
Sbjct: 25  SPLLHDGLPRRSFTYQKLPQQLFKLTILKLDGSCFDVEVARMASVAELKQAIEDVF-SVS 84

Query: 75  MNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
             +E   ISW HVWGHFCLC++  KL++DK+ +++FGI+DGDQLHF+
Sbjct: 85  PKEEHSRISWSHVWGHFCLCFEGQKLINDKAYLRNFGIKDGDQLHFI 130

The following BLAST results are available for this feature:

BLAST of CSPI01G16760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1125_ARATH	1.2e-11	41.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana G...	[more]

BLAST of CSPI01G16760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94_CUCSA	9.3e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G231020 PE=4 SV=1	[more]
M0SE72_MUSAM	1.6e-26	60.19	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0S3RP03_PHAAN	8.6e-25	55.66	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G233300 PE=...	[more]
V7CSP6_PHAVU	1.5e-24	55.66	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G050800g PE=4 SV=1	[more]
U5D6V9_AMBTC	5.6e-24	58.16	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00101090 PE=4 SV=...	[more]

BLAST of CSPI01G16760 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32270.1	1.4e-23	48.98	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	7.2e-23	48.31	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.3e-21	48.45	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	6.7e-13	41.86	Ubiquitin-like superfamily protein	[more]

BLAST of CSPI01G16760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660000\|ref\|XP_011655436.1\|	1.3e-71	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis ...	[more]
gi\|659086496\|ref\|XP_008443964.1\|	3.3e-70	97.67	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
gi\|659086494\|ref\|XP_008443963.1\|	5.1e-63	93.60	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
gi\|695010849\|ref\|XP_009392115.1\|	2.2e-26	60.19	PREDICTED: uncharacterized protein LOC103978141 [Musa acuminata subsp. malaccens...	[more]
gi\|719981602\|ref\|XP_010250174.1\|	5.0e-26	53.27	PREDICTED: uncharacterized protein LOC104592485 isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16760.1	CSPI01G16760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 35..122 score: 5.3
None	No IPR available	PANTHER	PTHR14942	FAMILY NOT NAMED	coord: 22..122 score: 2.0
None	No IPR available	PANTHER	PTHR14942:SF2	SUBFAMILY NOT NAMED	coord: 22..122 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G16760	Cla012213	Watermelon (97103) v1	cpiwmB102
CSPI01G16760	Csa1G231020	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16760	ClCG06G011440	Watermelon (Charleston Gray)	cpiwcgB086
CSPI01G16760	Lsi06G009950	Bottle gourd (USVL1VR-Ls)	cpilsiB074
CSPI01G16760	MELO3C029652.2	Melon (DHL92) v3.6.1	cpimedB042
CSPI01G16760	CsaV3_1G026670	Cucumber (Chinese Long) v3	cpicucB011
CSPI01G16760	Cla97C06G120590	Watermelon (97103) v2	cpiwmbB082
CSPI01G16760	Bhi02G000798	Wax gourd	cpiwgoB085
CSPI01G16760	Cucsa.036170	Cucumber (Gy14) v1	cgycpiB008
CSPI01G16760	CmaCh10G005330	Cucurbita maxima (Rimu)	cmacpiB053
CSPI01G16760	CmaCh11G005300	Cucurbita maxima (Rimu)	cmacpiB089
CSPI01G16760	CmoCh10G005680	Cucurbita moschata (Rifu)	cmocpiB044
CSPI01G16760	CmoCh11G005270	Cucurbita moschata (Rifu)	cmocpiB081
CSPI01G16760	Cp4.1LG04g09350	Cucurbita pepo (Zucchini)	cpecpiB660
CSPI01G16760	CsGy1G016940	Cucumber (Gy14) v2	cgybcpiB008
CSPI01G16760	Carg09933	Silver-seed gourd	carcpiB0141
CSPI01G16760	Carg12117	Silver-seed gourd	carcpiB0037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16760	Melon (DHL92) v3.5.1	cpimeB048