Carg09678 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09678
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TRAM/LAG1/CLN8 domain containing protein
Location	Cucurbita_argyrosperma_scaffold_023 : 293671 .. 294408 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCCATCTCAACCCTCTCCCTTTCTTCTTCTCGATCTTCTTTACCATCTATATCATTGCTTATTTCCTATTGTTTCGTAATTGGAGCCCTAAGATCCGGCCGGAAGCTGCGAGTTGCGCGATCTCCTTCGCTCATGGCACCCCCGCCGTGATCTTAGCCTCCAAAGCTATTCTCGCCGATGTCGCTCGCGGTTTTGCCTCATCCAATACGGATTTTCAAAACTCCGTCCTCGATTACAGCATCGCCTACTTTCTCATGGATCTGTTGCACTATCTCATCTTCTTCCCTGCAGATTTTCTCTTCATTGCGCATCATTTGGTCACTCTCTTTGTCTTCGTCACTTGCCGTTACCTCGTCTCTTATGGCGCTTATGCGATTCTTGTCCTTCTCATTCTCGCTGAGGTCACTAGCTTCTGCCAGAACGCTTGGACGCTCGCTAGAGCCAGAAGAGCCGATGTTGAGTTCGCTGATAGAGTATACAATCTTCTATCTCCTCCATTTTATGTGCTGTATTCGATCGTCAGGGGATTTGTTGGGCCTTACTTCCTTTACAAAATGGGTGAGTTCTTCTTCAATGGAGGAGCTGAGACTGTGATTCCTAAGTGGGTTTGGATGTCTTGGATTTTTGTTGTTGCTGCTGCCATTTCTGTGAGTATTTTGTGGATTACAAATCTCTGGATTGAATTATACAGAGAAAGAAGCAGCAAATTAGAGAAGAAGAAGGCAAGGTAG

mRNA sequence

ATGGAAACCCATCTCAACCCTCTCCCTTTCTTCTTCTCGATCTTCTTTACCATCTATATCATTGCTTATTTCCTATTGTTTCGTAATTGGAGCCCTAAGATCCGGCCGGAAGCTGCGAGTTGCGCGATCTCCTTCGCTCATGGCACCCCCGCCGTGATCTTAGCCTCCAAAGCTATTCTCGCCGATGTCGCTCGCGGTTTTGCCTCATCCAATACGGATTTTCAAAACTCCGTCCTCGATTACAGCATCGCCTACTTTCTCATGGATCTGTTGCACTATCTCATCTTCTTCCCTGCAGATTTTCTCTTCATTGCGCATCATTTGGTCACTCTCTTTGTCTTCGTCACTTGCCGTTACCTCGTCTCTTATGGCGCTTATGCGATTCTTGTCCTTCTCATTCTCGCTGAGGTCACTAGCTTCTGCCAGAACGCTTGGACGCTCGCTAGAGCCAGAAGAGCCGATGTTGAGTTCGCTGATAGAGTATACAATCTTCTATCTCCTCCATTTTATGTGCTGTATTCGATCGTCAGGGGATTTGTTGGGCCTTACTTCCTTTACAAAATGGGTGAGTTCTTCTTCAATGGAGGAGCTGAGACTGTGATTCCTAAGTGGGTTTGGATGTCTTGGATTTTTGTTGTTGCTGCTGCCATTTCTGTGAGTATTTTGTGGATTACAAATCTCTGGATTGAATTATACAGAGAAAGAAGCAGCAAATTAGAGAAGAAGAAGGCAAGGTAG

Coding sequence (CDS)

ATGGAAACCCATCTCAACCCTCTCCCTTTCTTCTTCTCGATCTTCTTTACCATCTATATCATTGCTTATTTCCTATTGTTTCGTAATTGGAGCCCTAAGATCCGGCCGGAAGCTGCGAGTTGCGCGATCTCCTTCGCTCATGGCACCCCCGCCGTGATCTTAGCCTCCAAAGCTATTCTCGCCGATGTCGCTCGCGGTTTTGCCTCATCCAATACGGATTTTCAAAACTCCGTCCTCGATTACAGCATCGCCTACTTTCTCATGGATCTGTTGCACTATCTCATCTTCTTCCCTGCAGATTTTCTCTTCATTGCGCATCATTTGGTCACTCTCTTTGTCTTCGTCACTTGCCGTTACCTCGTCTCTTATGGCGCTTATGCGATTCTTGTCCTTCTCATTCTCGCTGAGGTCACTAGCTTCTGCCAGAACGCTTGGACGCTCGCTAGAGCCAGAAGAGCCGATGTTGAGTTCGCTGATAGAGTATACAATCTTCTATCTCCTCCATTTTATGTGCTGTATTCGATCGTCAGGGGATTTGTTGGGCCTTACTTCCTTTACAAAATGGGTGAGTTCTTCTTCAATGGAGGAGCTGAGACTGTGATTCCTAAGTGGGTTTGGATGTCTTGGATTTTTGTTGTTGCTGCTGCCATTTCTGTGAGTATTTTGTGGATTACAAATCTCTGGATTGAATTATACAGAGAAAGAAGCAGCAAATTAGAGAAGAAGAAGGCAAGGTAG

Protein sequence

METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLVSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFVGPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLEKKKAR

Homology

[Close]

BLAST of Carg09678 vs. NCBI nr
Match: XP_022935006.1 (TLC domain-containing protein At5g14285-like [Cucurbita moschata])

HSP 1 Score: 472.6 bits (1215), Expect = 8.0e-130
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL
Sbjct: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPAD LFIAHHLVTLFVFVTCRYL
Sbjct: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV
Sbjct: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240

Query: 241 KKKAR 246
           KKKAR
Sbjct: 241 KKKAR 245

[Close]

BLAST of Carg09678 vs. NCBI nr
Match: XP_023526258.1 (TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.1 bits (1211), Expect = 2.3e-129
Identity = 242/245 (98.78%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL
Sbjct: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           AD+ARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPAD LFIAHHLVTLFVFVTCRYL
Sbjct: 61  ADIARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV
Sbjct: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERS+KLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSTKLE 240

Query: 241 KKKAR 246
           KKKAR
Sbjct: 241 KKKAR 245

[Close]

BLAST of Carg09678 vs. NCBI nr
Match: XP_022982707.1 (TLC domain-containing protein At5g14285-like [Cucurbita maxima])

HSP 1 Score: 469.5 bits (1207), Expect = 6.7e-129
Identity = 241/245 (98.37%), Postives = 243/245 (99.18%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL
Sbjct: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           AD ARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPAD LFIAHHLVTLFVFVTCRYL
Sbjct: 61  ADAARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADR+YNLLSPPFY+LYSIVRGFV
Sbjct: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRIYNLLSPPFYMLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240

Query: 241 KKKAR 246
           KKKAR
Sbjct: 241 KKKAR 245

[Close]

BLAST of Carg09678 vs. NCBI nr
Match: XP_008450065.1 (PREDICTED: uncharacterized protein LOC103491768 [Cucumis melo])

HSP 1 Score: 448.4 bits (1152), Expect = 1.6e-122
Identity = 229/245 (93.47%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPK+RPEAASCAISFAHGTPAV LAS AIL
Sbjct: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKVRPEAASCAISFAHGTPAVFLASGAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           +D  RGFAS N+D QN VLDYSIAYFLMDLLHYLIFFP+D LFIAHHLVTLFVFVTCRYL
Sbjct: 61  SDAGRGFASPNSDLQNVVLDYSIAYFLMDLLHYLIFFPSDLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VSYGAYAILVLLILAEVTSFCQN WTLARARRADVEFADRVYN+LSPPFYVLYSIVRGFV
Sbjct: 121 VSYGAYAILVLLILAEVTSFCQNVWTLARARRADVEFADRVYNILSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIP WVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPTWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240

Query: 241 KKKAR 246
           KKK R
Sbjct: 241 KKKGR 245

[Close]

BLAST of Carg09678 vs. NCBI nr
Match: XP_004145717.1 (PREDICTED: uncharacterized protein LOC101208807 [Cucumis sativus] >KGN58200.1 hypothetical protein Csa_3G589580 [Cucumis sativus])

HSP 1 Score: 443.0 bits (1138), Expect = 6.8e-121
Identity = 225/242 (92.98%), Postives = 232/242 (95.87%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIY+IAYFLLFRNWSPKIRPEAASCAISFAHGTPAV LAS AIL
Sbjct: 1   METHLNPLPFFFSIFFTIYVIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVFLASGAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           +D  RGFAS N+D QN VLDYSIAYFLMDLLHYLIFFP+D LFIAHHLVTLFVFVTCRYL
Sbjct: 61  SDAGRGFASPNSDLQNLVLDYSIAYFLMDLLHYLIFFPSDLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VS+GAYAILVLLILAEVTSFCQN WTLARARRADVEFADRVYN+LSPPFYVLYSIVRGFV
Sbjct: 121 VSHGAYAILVLLILAEVTSFCQNVWTLARARRADVEFADRVYNILSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIP WVWMSWIFVVAAAISVSILWITNLW+ELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPTWVWMSWIFVVAAAISVSILWITNLWVELYRERSSKLE 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Carg09678 vs. TAIR10
Match: AT5G14280.1 (DNA-binding storekeeper protein-related)

HSP 1 Score: 288.5 bits (737), Expect = 3.9e-78
Identity = 152/246 (61.79%), Postives = 187/246 (76.02%), Query Frame = 0


Query: 2   ETHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILA 61
           E  +  LP FFS+F TIY+IAYF++FRNW P+IRPEA+SC IS  HG+PAV LA++A+ +
Sbjct: 325 EISIPDLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFS 384

Query: 62  DVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLV 121
              R FAS+NT  QN+VLD+S+AYFL DL HY++F P D LFI HH+ TLFVF+TCR+LV
Sbjct: 385 SSERSFASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLV 444

Query: 122 SYGAYAILVLLILAEVTSFCQNAWTLARARRADVE--FADRVYNLLSPPFYVLYSIVRGF 181
            +GA AIL LLILAEVTS CQNAWTLA AR+ D E   A +VY+LLSPPFY  YSIVRG 
Sbjct: 445 FHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGV 504

Query: 182 VGPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSS-- 241
           +GP F  KM  F+  GGA  VIP W+W+SW  VV  AI+VSILWI NLWIEL+ ER +  
Sbjct: 505 LGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELFSERKANK 564

Query: 242 -KLEKK 243
            +++KK
Sbjct: 565 IRVDKK 570

[Close]

BLAST of Carg09678 vs. TAIR10
Match: AT3G25950.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-62
Identity = 125/242 (51.65%), Postives = 164/242 (67.77%), Query Frame = 0


Query: 5   LNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL---- 64
           L   P F  +F  +Y I YFL+FR W        ASC +S  HGTPAVI+AS A+L    
Sbjct: 12  LATFPSFLLLFLAVYTIGYFLVFRTWKQSSH-LGASCLMSLFHGTPAVIMASHALLTTPR 71

Query: 65  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 124
           ADV   FAS NT  +++VLD+S+AYF +DLLHYLIF P DF+FI HH+ TL+VF TCR+ 
Sbjct: 72  ADV-HSFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFA 131

Query: 125 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 184
           V +GA+ +L+LLILAE TS CQN WT+   R+ DV  A RV  LLSPPFY+ Y++VRG  
Sbjct: 132 VGHGAHGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLA 191

Query: 185 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 243
           GP  LY M  F+ +G A+ V+P+W W+SW+ V+  AI VSILW+   W++ +RE +S  +
Sbjct: 192 GPVVLYDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSKK 251

[Close]

BLAST of Carg09678 vs. TAIR10
Match: AT3G27270.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-56
Identity = 116/243 (47.74%), Postives = 157/243 (64.61%), Query Frame = 0


Query: 3   THLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILAD 62
           T+   LP FFSIF  +Y++ Y  +F+ W+P+ RP A+SC IS  HG  AV+LA+ A+L+D
Sbjct: 5   TYSKDLPLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSD 64

Query: 63  VARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIF-FPA--DFLFIAHHLVTLFVFVTCRY 122
             RGF+S NT  QNS+LD+S AYFL DL+H  +F  PA  D LF AHHL  LFVF+TCRY
Sbjct: 65  PNRGFSSVNTQSQNSILDFSSAYFLADLVHLAVFPSPAGGDSLFAAHHLAVLFVFLTCRY 124

Query: 123 LVSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGF 182
           +V++GA A+L LL++AE TS CQN WTLA AR  D   A  ++  ++ PFY  YS+ R  
Sbjct: 125 MVAHGACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRCV 184

Query: 183 VGPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKL 242
           + P  + KM  F+ +GGA+ VIP+WVW+SW  V+               +  ++ER SK 
Sbjct: 185 LAPLLIVKMTWFYVSGGADDVIPRWVWVSWTVVIVXXXXXXXXXXXXXXVLFFQERYSKF 244

[Close]

BLAST of Carg09678 vs. Swiss-Prot
Match: sp|Q8GYK7|Y5285_ARATH (TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g14285 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.0e-77
Identity = 152/246 (61.79%), Postives = 187/246 (76.02%), Query Frame = 0


Query: 2   ETHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILA 61
           E  +  LP FFS+F TIY+IAYF++FRNW P+IRPEA+SC IS  HG+PAV LA++A+ +
Sbjct: 7   EISIPDLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFS 66

Query: 62  DVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLV 121
              R FAS+NT  QN+VLD+S+AYFL DL HY++F P D LFI HH+ TLFVF+TCR+LV
Sbjct: 67  SSERSFASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLV 126

Query: 122 SYGAYAILVLLILAEVTSFCQNAWTLARARRADVE--FADRVYNLLSPPFYVLYSIVRGF 181
            +GA AIL LLILAEVTS CQNAWTLA AR+ D E   A +VY+LLSPPFY  YSIVRG 
Sbjct: 127 FHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGV 186

Query: 182 VGPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSS-- 241
           +GP F  KM  F+  GGA  VIP W+W+SW  VV  AI+VSILWI NLWIEL+ ER +  
Sbjct: 187 LGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELFSERKANK 246

Query: 242 -KLEKK 243
            +++KK
Sbjct: 247 IRVDKK 252

[Close]

BLAST of Carg09678 vs. TrEMBL
Match: tr|A0A1S3BMT9|A0A1S3BMT9_CUCME (uncharacterized protein LOC103491768 OS=Cucumis melo OX=3656 GN=LOC103491768 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.1e-122
Identity = 229/245 (93.47%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPK+RPEAASCAISFAHGTPAV LAS AIL
Sbjct: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKVRPEAASCAISFAHGTPAVFLASGAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           +D  RGFAS N+D QN VLDYSIAYFLMDLLHYLIFFP+D LFIAHHLVTLFVFVTCRYL
Sbjct: 61  SDAGRGFASPNSDLQNVVLDYSIAYFLMDLLHYLIFFPSDLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VSYGAYAILVLLILAEVTSFCQN WTLARARRADVEFADRVYN+LSPPFYVLYSIVRGFV
Sbjct: 121 VSYGAYAILVLLILAEVTSFCQNVWTLARARRADVEFADRVYNILSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIP WVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPTWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240

Query: 241 KKKAR 246
           KKK R
Sbjct: 241 KKKGR 245

[Close]

BLAST of Carg09678 vs. TrEMBL
Match: tr|A0A0A0L8C3|A0A0A0L8C3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589580 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 4.5e-121
Identity = 225/242 (92.98%), Postives = 232/242 (95.87%), Query Frame = 0


Query: 1   METHLNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAIL 60
           METHLNPLPFFFSIFFTIY+IAYFLLFRNWSPKIRPEAASCAISFAHGTPAV LAS AIL
Sbjct: 1   METHLNPLPFFFSIFFTIYVIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVFLASGAIL 60

Query: 61  ADVARGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYL 120
           +D  RGFAS N+D QN VLDYSIAYFLMDLLHYLIFFP+D LFIAHHLVTLFVFVTCRYL
Sbjct: 61  SDAGRGFASPNSDLQNLVLDYSIAYFLMDLLHYLIFFPSDLLFIAHHLVTLFVFVTCRYL 120

Query: 121 VSYGAYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFV 180
           VS+GAYAILVLLILAEVTSFCQN WTLARARRADVEFADRVYN+LSPPFYVLYSIVRGFV
Sbjct: 121 VSHGAYAILVLLILAEVTSFCQNVWTLARARRADVEFADRVYNILSPPFYVLYSIVRGFV 180

Query: 181 GPYFLYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLE 240
           GPYFLYKMGEFFFNGGAETVIP WVWMSWIFVVAAAISVSILWITNLW+ELYRERSSKLE
Sbjct: 181 GPYFLYKMGEFFFNGGAETVIPTWVWMSWIFVVAAAISVSILWITNLWVELYRERSSKLE 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Carg09678 vs. TrEMBL
Match: tr|A0A2P5B5D9|A0A2P5B5D9_PARAD (TRAM/LAG1/CLN8 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_269320 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.6e-94
Identity = 181/238 (76.05%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 5   LNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILADVA 64
           L  LP F S F  IY+IA FL+FRNWSPKIRPEA+SC ISF HGTPAV LA+ AILAD  
Sbjct: 12  LPTLPLFVSFFVFIYLIAQFLVFRNWSPKIRPEASSCLISFFHGTPAVFLATGAILADPN 71

Query: 65  RGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLVSYG 124
           RGFAS NT+FQN VLDYSIAYFLMDLLHY+IF P D LFI HHL TLFVFVTCRYLVS+G
Sbjct: 72  RGFASPNTEFQNLVLDYSIAYFLMDLLHYIIFVPGDLLFIGHHLATLFVFVTCRYLVSHG 131

Query: 125 AYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFVGPYF 184
           A+AIL LLILAEVTSFCQN WTLA ARR D+EFA RVY+LLSPPFY LYS+VRGF GPYF
Sbjct: 132 AFAILFLLILAEVTSFCQNTWTLANARRGDIEFAARVYDLLSPPFYALYSVVRGFAGPYF 191

Query: 185 LYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLEKK 243
           LY+MG F+ +G A+ VIP+WVW+SW+ VV  AISVSILWITNLW+ELYR R+ KLEKK
Sbjct: 192 LYQMGLFYLSGAADGVIPRWVWVSWMVVVLTAISVSILWITNLWVELYRVRTGKLEKK 249

[Close]

BLAST of Carg09678 vs. TrEMBL
Match: tr|A0A2P6S676|A0A2P6S676_ROSCH (Putative TRAM/LAG1/CLN8 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0174621 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.3e-91
Identity = 171/238 (71.85%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 5   LNPLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILADVA 64
           L PLP  FS F T+Y+IAYFL+FR+WSPKIRPEA+SC IS AHGTPAV  +S AIL+D +
Sbjct: 12  LPPLPILFSFFLTVYLIAYFLVFRSWSPKIRPEASSCLISLAHGTPAVFFSSFAILSDPS 71

Query: 65  RGFASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLVSYG 124
            GFA+ NT  QNSVLD+S+AYFLMDLLHYL+FFP D LFI HHL TLFVF+TCRY+ S G
Sbjct: 72  TGFAAPNTRLQNSVLDFSVAYFLMDLLHYLLFFPGDVLFIGHHLATLFVFLTCRYVASRG 131

Query: 125 AYAILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFVGPYF 184
           A+A+L LLILAEVTS CQN WTLA ARR DVEFA +VY+ LSPPFYVLYSIVRGFVGP F
Sbjct: 132 AFAVLTLLILAEVTSLCQNVWTLANARRRDVEFAAKVYDFLSPPFYVLYSIVRGFVGPCF 191

Query: 185 LYKMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLEKK 243
           +Y+M  F+ +G AE +IP+WVW+SWI VV +AISVSI+WI+NLW+ELYR+RS KLEKK
Sbjct: 192 VYRMCAFYASGAAEGLIPRWVWVSWIVVVMSAISVSIMWISNLWVELYRDRSGKLEKK 249

[Close]

BLAST of Carg09678 vs. TrEMBL
Match: tr|A0A2G9GAZ6|A0A2G9GAZ6_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25008 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.8e-90
Identity = 169/236 (71.61%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 7   PLPFFFSIFFTIYIIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVILASKAILADVARG 66
           PLP FF+ +  +Y++AYFL+FR WSPK+RPEAASCAIS AHGTPAV LA +AIL+D AR 
Sbjct: 14  PLPRFFTSYLILYLVAYFLIFRRWSPKLRPEAASCAISLAHGTPAVFLAWRAILSDAARD 73

Query: 67  FASSNTDFQNSVLDYSIAYFLMDLLHYLIFFPADFLFIAHHLVTLFVFVTCRYLVSYGAY 126
           F S NT  QN VLDYSIAYFLMDLLHYLIF+P D LFI HHL TLFVF+TCRY+  +GA+
Sbjct: 74  FHSPNTPLQNVVLDYSIAYFLMDLLHYLIFYPTDILFIGHHLATLFVFLTCRYVAYHGAF 133

Query: 127 AILVLLILAEVTSFCQNAWTLARARRADVEFADRVYNLLSPPFYVLYSIVRGFVGPYFLY 186
           AILVLLILAEVTS CQN WTLA AR++DVEFA +VY+ LSPPFY LYS+VRGF+GPYF+Y
Sbjct: 134 AILVLLILAEVTSLCQNVWTLASARKSDVEFAAKVYDFLSPPFYALYSLVRGFLGPYFVY 193

Query: 187 KMGEFFFNGGAETVIPKWVWMSWIFVVAAAISVSILWITNLWIELYRERSSKLEKK 243
           +M  F+ +G A+ VIPKW+W+SW+FVV  AISVSILWI+NLWIELYRER   +EKK
Sbjct: 194 RMFGFYLSGAADNVIPKWMWISWVFVVFMAISVSILWISNLWIELYRERKKLVEKK 249

The following BLAST results are available for this feature:

BLAST of Carg09678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935006.1	8.0e-130	99.59	TLC domain-containing protein At5g14285-like [Cucurbita moschata]	[more]
XP_023526258.1	2.3e-129	98.78	TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982707.1	6.7e-129	98.37	TLC domain-containing protein At5g14285-like [Cucurbita maxima]	[more]
XP_008450065.1	1.6e-122	93.47	PREDICTED: uncharacterized protein LOC103491768 [Cucumis melo]	[more]
XP_004145717.1	6.8e-121	92.98	PREDICTED: uncharacterized protein LOC101208807 [Cucumis sativus] >KGN58200.1 hy...	[more]

BLAST of Carg09678 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14280.1	3.9e-78	61.79	DNA-binding storekeeper protein-related	[more]
AT3G25950.1	1.7e-62	51.65	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT3G27270.1	2.4e-56	47.74	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

BLAST of Carg09678 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYK7\|Y5285_ARATH	7.0e-77	61.79	TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]

BLAST of Carg09678 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMT9\|A0A1S3BMT9_CUCME	1.1e-122	93.47	uncharacterized protein LOC103491768 OS=Cucumis melo OX=3656 GN=LOC103491768 PE=...	[more]
tr\|A0A0A0L8C3\|A0A0A0L8C3_CUCSA	4.5e-121	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589580 PE=4 SV=1	[more]
tr\|A0A2P5B5D9\|A0A2P5B5D9_PARAD	1.6e-94	76.05	TRAM/LAG1/CLN8 domain containing protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
tr\|A0A2P6S676\|A0A2P6S676_ROSCH	6.3e-91	71.85	Putative TRAM/LAG1/CLN8 domain-containing protein OS=Rosa chinensis OX=74649 GN=...	[more]
tr\|A0A2G9GAZ6\|A0A2G9GAZ6_9LAMI	1.8e-90	71.61	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25008 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09678-RA	Carg09678-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..245
None	No IPR available	PANTHER	PTHR31766:SF2	DNA-BINDING STOREKEEPER PROTEIN-LIKE PROTEIN	coord: 6..243
None	No IPR available	PANTHER	PTHR31766	FAMILY NOT NAMED	coord: 6..243
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 33..236 e-value: 1.5E-25 score: 100.8
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 33..236 score: 9.342

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09678	Cla004046	Watermelon (97103) v1	carwmB0433
Carg09678	Csa3G589580	Cucumber (Chinese Long) v2	carcuB0466
Carg09678	MELO3C014858	Melon (DHL92) v3.5.1	carmeB0444
Carg09678	ClCG05G013260	Watermelon (Charleston Gray)	carwcgB0428
Carg09678	CSPI03G25750	Wild cucumber (PI 183967)	carcpiB0471
Carg09678	Cucsa.156390	Cucumber (Gy14) v1	carcgyB0503
Carg09678	CmaCh14G007000	Cucurbita maxima (Rimu)	carcmaB0607
Carg09678	CmaCh11G014850	Cucurbita maxima (Rimu)	carcmaB0605
Carg09678	CmoCh14G007180	Cucurbita moschata (Rifu)	carcmoB0592
Carg09678	CmoCh11G016360	Cucurbita moschata (Rifu)	carcmoB0589
Carg09678	Lsi07G014590	Bottle gourd (USVL1VR-Ls)	carlsiB399
Carg09678	Cp4.1LG03g07020	Cucurbita pepo (Zucchini)	carcpeB0613
Carg09678	Cp4.1LG04g05770	Cucurbita pepo (Zucchini)	carcpeB0614
Carg09678	CsGy3G024160	Cucumber (Gy14) v2	carcgybB0443
Carg09678	MELO3C014858.2	Melon (DHL92) v3.6.1	carmedB0446
Carg09678	CsaV3_3G027280	Cucumber (Chinese Long) v3	carcucB0467
Carg09678	Cla97C05G094820	Watermelon (97103) v2	carwmbB0459
Carg09678	Bhi01G001587	Wax gourd	carwgoB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09678	Carg15578	Silver-seed gourd	carcarB397

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09678	Cucurbita maxima (Rimu)	carcmaB0603
Carg09678	Cucurbita maxima (Rimu)	carcmaB0604
Carg09678	Cucurbita moschata (Rifu)	carcmoB0588
Carg09678	Cucurbita moschata (Rifu)	carcmoB0590
Carg09678	Cucurbita pepo (Zucchini)	carcpeB0610
Carg09678	Cucumber (Chinese Long) v3	carcucB0466
Carg09678	Bottle gourd (USVL1VR-Ls)	carlsiB397
Carg09678	Melon (DHL92) v3.5.1	carmeB0442
Carg09678	Watermelon (Charleston Gray)	carwcgB0430
Carg09678	Watermelon (97103) v1	carwmB0437
Carg09678	Watermelon (97103) v2	carwmbB0460
Carg09678	Silver-seed gourd	carcarB388
Carg09678	Silver-seed gourd	carcarB446
Carg09678	Cucumber (Gy14) v2	carcgybB0442