Carg09450 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09450
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase subunit TIM23-like protein
Location	Cucurbita_argyrosperma_scaffold_029 : 180417 .. 180989 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCATTCTTCCAATCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAACCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGGCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGTGATACGATGAAACTACGGATCAATCGGATCTTGAACTCGTCTGGTCATTCAGGGCGTCTCTGGGGGAATCGTCTGGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

mRNA sequence

ATGGCGGACCATTCTTCCAATCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAACCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGGCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGTGATACGATGAAACTACGGATCAATCGGATCTTGAACTCGTCTGGTCATTCAGGGCGTCTCTGGGGGAATCGTCTGGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

Coding sequence (CDS)

ATGGCGGACCATTCTTCCAATCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAACCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGGCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGTGATACGATGAAACTACGGATCAATCGGATCTTGAACTCGTCTGGTCATTCAGGGCGTCTCTGGGGGAATCGTCTGGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

Protein sequence

MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI

Homology

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BLAST of Carg09450 vs. NCBI nr
Match: XP_022953829.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_022953830.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023548834.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo] >XP_023548835.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-101
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSSNRDTDSGFDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSNRDTDSGFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

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BLAST of Carg09450 vs. NCBI nr
Match: XP_022992412.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 5.1e-100
Identity = 187/190 (98.42%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSS RDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of Carg09450 vs. NCBI nr
Match: XP_004141690.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Cucumis sativus] >XP_008462339.1 PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Cucumis melo])

HSP 1 Score: 365.2 bits (936), Expect = 1.4e-97
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MA HSSNRDTDS FDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTG VSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGA+GGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of Carg09450 vs. NCBI nr
Match: XP_023000450.1 (mitochondrial import inner membrane translocase subunit TIM23-1-like [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 2.4e-97
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MAD SS+R+ DSGFD GSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADRSSDREIDSGFDQGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of Carg09450 vs. NCBI nr
Match: XP_022149688.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Momordica charantia])

HSP 1 Score: 363.2 bits (931), Expect = 5.3e-97
Identity = 182/190 (95.79%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSSN D DSGFD GS QPRLYNPYKDLQVPYRNFQLP+SPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSNHDIDSGFDRGSPQPRLYNPYKDLQVPYRNFQLPSSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG+AVT 
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTA 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of Carg09450 vs. TAIR10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2)

HSP 1 Score: 247.7 bits (631), Expect = 5.9e-66
Identity = 125/181 (69.06%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCG 74
           DHGS +  RLYNPY++ +VP       ++LPTSPEFLF EEA RQRRSWGENLTFYTG  
Sbjct: 8   DHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTA 67

Query: 75  YLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLES 134
           YL G+V GAS G ++GVKSFESGDT KL+INRILNSSG +GR WGNR+G+IGL+YAG+ES
Sbjct: 68  YLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIES 127

Query: 135 GFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVP 191
           G  A  D DDVW  V AGLGTGA+ RAARGVRSAAVAGA+GG+  G  V GKQ++KRYVP
Sbjct: 128 GIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVP 187

[Close]

BLAST of Carg09450 vs. TAIR10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23)

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-64
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 7   NRDTDSGFDHGSSQPRLYNPYKDLQVPYRN---FQLPTSPEFLFDEEARRQRRSWGENLT 66
           NR +D   D  +   RLY+PY++ QVP ++   ++LPTSPEFLF EE+ +QRRSWGENLT
Sbjct: 4   NRSSDHESDENT---RLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLT 63

Query: 67  FYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLL 126
           FYTG GYLAG+V GAS G  SG+KSFE+GDT KL+INRILNSSG +GR WGNR+G++GL+
Sbjct: 64  FYTGTGYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLI 123

Query: 127 YAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQM 186
           YAG+ESG  AV D DDVW  V AGLGTGA++RAARGVRSAAVAGA GG+  G  V GKQ+
Sbjct: 124 YAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQV 183

Query: 187 LKRYVPI 191
            KRY  I
Sbjct: 184 FKRYAHI 187

[Close]

BLAST of Carg09450 vs. TAIR10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3)

HSP 1 Score: 180.6 bits (457), Expect = 8.8e-46
Identity = 94/171 (54.97%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 22  RLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGAST 81
           R YNPY+ + +PYR  ++LPTSPEFLF+EEA ++R +WGENLTF+TG GY  G+V GA  
Sbjct: 18  RQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFK 77

Query: 82  GFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGFEAVRDTDD- 141
           G ++G+++ E G+++K+R NRILNS G   R  GN LG +GL++A +ESG   +RD DD 
Sbjct: 78  GTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDG 137

Query: 142 VWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
               V AGL TG LYRAA G RSA VAGA+GGV    AV G++++KR+VPI
Sbjct: 138 SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of Carg09450 vs. Swiss-Prot
Match: sp|Q38820|TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 125/181 (69.06%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCG 74
           DHGS +  RLYNPY++ +VP       ++LPTSPEFLF EEA RQRRSWGENLTFYTG  
Sbjct: 8   DHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTA 67

Query: 75  YLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLES 134
           YL G+V GAS G ++GVKSFESGDT KL+INRILNSSG +GR WGNR+G+IGL+YAG+ES
Sbjct: 68  YLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIES 127

Query: 135 GFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVP 191
           G  A  D DDVW  V AGLGTGA+ RAARGVRSAAVAGA+GG+  G  V GKQ++KRYVP
Sbjct: 128 GIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVP 187

[Close]

BLAST of Carg09450 vs. Swiss-Prot
Match: sp|Q9LNQ1|TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-63
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 7   NRDTDSGFDHGSSQPRLYNPYKDLQVPYRN---FQLPTSPEFLFDEEARRQRRSWGENLT 66
           NR +D   D  +   RLY+PY++ QVP ++   ++LPTSPEFLF EE+ +QRRSWGENLT
Sbjct: 4   NRSSDHESDENT---RLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLT 63

Query: 67  FYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLL 126
           FYTG GYLAG+V GAS G  SG+KSFE+GDT KL+INRILNSSG +GR WGNR+G++GL+
Sbjct: 64  FYTGTGYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLI 123

Query: 127 YAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQM 186
           YAG+ESG  AV D DDVW  V AGLGTGA++RAARGVRSAAVAGA GG+  G  V GKQ+
Sbjct: 124 YAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQV 183

Query: 187 LKRYVPI 191
            KRY  I
Sbjct: 184 FKRYAHI 187

[Close]

BLAST of Carg09450 vs. Swiss-Prot
Match: sp|Q9S837|TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 94/171 (54.97%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 22  RLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGAST 81
           R YNPY+ + +PYR  ++LPTSPEFLF+EEA ++R +WGENLTF+TG GY  G+V GA  
Sbjct: 18  RQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFK 77

Query: 82  GFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGFEAVRDTDD- 141
           G ++G+++ E G+++K+R NRILNS G   R  GN LG +GL++A +ESG   +RD DD 
Sbjct: 78  GTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDG 137

Query: 142 VWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
               V AGL TG LYRAA G RSA VAGA+GGV    AV G++++KR+VPI
Sbjct: 138 SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of Carg09450 vs. Swiss-Prot
Match: sp|Q9USM7|TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 56  RSWGENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGN 115
           R W ++L + TG  YL+G   G   G   G+K  +   + +LR+N ILN     G   GN
Sbjct: 77  RGWQDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGN 136

Query: 116 RLGVIGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG 175
            LGV+ L+Y G+ S     R      N VAAG  TGALY++ RG+R+ A++ ++     G
Sbjct: 137 SLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSSLVATAAG 196

Query: 176 MAVTGKQ 183
           +    K+
Sbjct: 197 IWTLAKR 203

[Close]

BLAST of Carg09450 vs. Swiss-Prot
Match: sp|A4IFL0|TIM23_BOVIN (Mitochondrial import inner membrane translocase subunit Tim23 OS=Bos taurus OX=9913 GN=TIMM23 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 0


Query: 33  PYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYT--GCGYLAGAVGGASTGFVSGV 92
           PY N    + +  + EF+    A + R  +   L F+T  GC  + GA  GA  G   G+
Sbjct: 44  PYLNVDPRYLVQDTDEFILPTGANKTRGRF--ELAFFTIGGC-CMTGAAFGAMNGLRLGL 103

Query: 93  KSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGFEAVRDTDDVWNCVAA 152
           K  ++    K R  +ILN     G LW N LG + LLY+      E  R  +D  N VAA
Sbjct: 104 KETQNMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAA 163

Query: 153 GLGTGALYRAARGVRSAAVAGAIGGVVVGM 177
           G  TG LY+   G+R AA  G  G  + G+
Sbjct: 164 GTMTGMLYKCTGGLRGAARGGLAGLTLTGL 190

[Close]

BLAST of Carg09450 vs. TrEMBL
Match: tr|A0A1S3CGP4|A0A1S3CGP4_CUCME (mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucumis melo OX=3656 GN=LOC103500713 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 9.2e-98
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MA HSSNRDTDS FDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTG VSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGA+GGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of Carg09450 vs. TrEMBL
Match: tr|A0A0A0K7V6|A0A0A0K7V6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450700 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 3.3e-95
Identity = 179/186 (96.24%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MA HSSNRDTDS FDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVGGASTG VSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGA+GGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTG 180

Query: 181 KQMLKR 187
           KQMLKR
Sbjct: 181 KQMLKR 186

[Close]

BLAST of Carg09450 vs. TrEMBL
Match: tr|W9QE41|W9QE41_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013469 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.0e-77
Identity = 152/191 (79.58%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWG 60
           MAD  S+ D + G D   S+PRLYNPY+DLQVP RN +QLPTSPEFLFDEEARRQRRSWG
Sbjct: 1   MADAISSPDHERGSD--LSKPRLYNPYQDLQVPIRNLYQLPTSPEFLFDEEARRQRRSWG 60

Query: 61  ENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGV 120
           ENLTFYTGC YL GAVGGA  G V+GVKSFE GDT KLRINRILN+SGH+GR+WGNRLGV
Sbjct: 61  ENLTFYTGCSYLTGAVGGAGAGLVTGVKSFEPGDTTKLRINRILNASGHAGRVWGNRLGV 120

Query: 121 IGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVT 180
           IGL+YAGLESG  ++RDTDDVWN VAAGLGTGALYRAARGVRSAAVAGA+GGV+VG AVT
Sbjct: 121 IGLMYAGLESGIVSLRDTDDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGVLVGAAVT 180

Query: 181 GKQMLKRYVPI 191
            KQ++KRYVPI
Sbjct: 181 AKQVVKRYVPI 189

[Close]

BLAST of Carg09450 vs. TrEMBL
Match: tr|A0A2P5FEH5|A0A2P5FEH5_9ROSA (Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_081220 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.6e-76
Identity = 151/191 (79.06%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWG 60
           MAD  S+ D +       S+PRLYNPY+DLQVP RN ++LPTSPEFLF EEARRQRRSWG
Sbjct: 1   MADSISSSDRERDL----SKPRLYNPYQDLQVPMRNLYELPTSPEFLFVEEARRQRRSWG 60

Query: 61  ENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGV 120
           ENLTFYTGC YLAGAVGGA  G V+GVKSFES DTMKLR+NRILN+SGHSGR+WGNRLGV
Sbjct: 61  ENLTFYTGCSYLAGAVGGAGAGLVTGVKSFESSDTMKLRVNRILNASGHSGRVWGNRLGV 120

Query: 121 IGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVT 180
           IGLLYAGLESG  ++RDTDDVWN VAAGLGTGALYRAARGVRSAAVAGA+GGV+VG+AVT
Sbjct: 121 IGLLYAGLESGIVSLRDTDDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGVLVGVAVT 180

Query: 181 GKQMLKRYVPI 191
            KQ +KRYVPI
Sbjct: 181 AKQAVKRYVPI 187

[Close]

BLAST of Carg09450 vs. TrEMBL
Match: tr|A0A251PV87|A0A251PV87_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G045100 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 5.8e-76
Identity = 149/191 (78.01%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWG 60
           MA H S+ D D   D  +S+ RLYNPY+DLQVP RN +QLPTSPEFLF EEARRQRRSWG
Sbjct: 1   MAHHMSSSDHDPNSD--ASKARLYNPYQDLQVPMRNLYQLPTSPEFLFVEEARRQRRSWG 60

Query: 61  ENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGV 120
           ENLTFYTGC YLAGA+GG +TG VSGV+SFE+GDT KLRINR+LNSSGH+GR+WGNRLGV
Sbjct: 61  ENLTFYTGCSYLAGAIGGGTTGLVSGVRSFEAGDTTKLRINRVLNSSGHTGRVWGNRLGV 120

Query: 121 IGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVT 180
           IGL+YAG+ESG +AVRDTDDV N +AAGL TGA+YRAARGVRSAAVAGA+GGV+VG+AVT
Sbjct: 121 IGLIYAGMESGIQAVRDTDDVLNSIAAGLTTGAVYRAARGVRSAAVAGAVGGVLVGVAVT 180

Query: 181 GKQMLKRYVPI 191
           GKQ LKRYVPI
Sbjct: 181 GKQALKRYVPI 189

The following BLAST results are available for this feature:

BLAST of Carg09450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953829.1	2.1e-101	99.47	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_022992412.1	5.1e-100	98.42	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_004141690.1	1.4e-97	96.32	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Cucu...	[more]
XP_023000450.1	2.4e-97	96.32	mitochondrial import inner membrane translocase subunit TIM23-1-like [Cucurbita ...	[more]
XP_022149688.1	5.3e-97	95.79	mitochondrial import inner membrane translocase subunit TIM23-2-like [Momordica ...	[more]

BLAST of Carg09450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72750.1	5.9e-66	69.06	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	2.5e-64	65.24	translocase of inner mitochondrial membrane 23	[more]
AT3G04800.1	8.8e-46	54.97	translocase inner membrane subunit 23-3	[more]

BLAST of Carg09450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38820\|TI232_ARATH	1.1e-64	69.06	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
sp\|Q9LNQ1\|TI231_ARATH	4.4e-63	65.24	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
sp\|Q9S837\|TI233_ARATH	1.6e-44	54.97	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
sp\|Q9USM7\|TIM23_SCHPO	2.1e-12	35.43	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
sp\|A4IFL0\|TIM23_BOVIN	5.7e-10	34.67	Mitochondrial import inner membrane translocase subunit Tim23 OS=Bos taurus OX=9...	[more]

BLAST of Carg09450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGP4\|A0A1S3CGP4_CUCME	9.2e-98	96.32	mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucumis ...	[more]
tr\|A0A0A0K7V6\|A0A0A0K7V6_CUCSA	3.3e-95	96.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450700 PE=4 SV=1	[more]
tr\|W9QE41\|W9QE41_9ROSA	4.0e-77	79.58	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013469 PE=4 SV=1	[more]
tr\|A0A2P5FEH5\|A0A2P5FEH5_9ROSA	2.6e-76	79.06	Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN...	[more]
tr\|A0A251PV87\|A0A251PV87_PRUPE	5.8e-76	78.01	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G045100 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09450-RA	Carg09450-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 65..173 e-value: 1.8E-21 score: 76.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 11..190
None	No IPR available	PANTHER	PTHR15371:SF15	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-1-RELATED	coord: 11..190

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09450	Cla015568	Watermelon (97103) v1	carwmB1029
Carg09450	Csa7G450700	Cucumber (Chinese Long) v2	carcuB1039
Carg09450	MELO3C024375	Melon (DHL92) v3.5.1	carmeB0995
Carg09450	ClCG09G000820	Watermelon (Charleston Gray)	carwcgB1002
Carg09450	CSPI07G22720	Wild cucumber (PI 183967)	carcpiB1063
Carg09450	Cucsa.360430	Cucumber (Gy14) v1	carcgyB1147
Carg09450	CmaCh08G007840	Cucurbita maxima (Rimu)	carcmaB1424
Carg09450	CmaCh17G007110	Cucurbita maxima (Rimu)	carcmaB1419
Carg09450	CmoCh17G006850	Cucurbita moschata (Rifu)	carcmoB1376
Carg09450	CmoCh08G007500	Cucurbita moschata (Rifu)	carcmoB1379
Carg09450	Lsi02G029190	Bottle gourd (USVL1VR-Ls)	carlsiB936
Carg09450	Cp4.1LG17g04770	Cucurbita pepo (Zucchini)	carcpeB1425
Carg09450	Cp4.1LG12g09010	Cucurbita pepo (Zucchini)	carcpeB1424
Carg09450	MELO3C024376.2	Melon (DHL92) v3.6.1	carmedB1007
Carg09450	CsaV3_7G034660	Cucumber (Chinese Long) v3	carcucB1073
Carg09450	Cla97C09G162810	Watermelon (97103) v2	carwmbB1090
Carg09450	Bhi09G000292	Wax gourd	carwgoB1202

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09450	Carg13954	Silver-seed gourd	carcarB542

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09450	Cucumber (Chinese Long) v2	carcuB1037
Carg09450	Cucumber (Chinese Long) v3	carcucB1071
Carg09450	Bottle gourd (USVL1VR-Ls)	carlsiB938
Carg09450	Bottle gourd (USVL1VR-Ls)	carlsiB939
Carg09450	Melon (DHL92) v3.5.1	carmeB0997
Carg09450	Watermelon (Charleston Gray)	carwcgB1003
Carg09450	Watermelon (Charleston Gray)	carwcgB1004
Carg09450	Watermelon (97103) v1	carwmB1030
Carg09450	Watermelon (97103) v1	carwmB1031
Carg09450	Watermelon (97103) v2	carwmbB1086
Carg09450	Watermelon (97103) v2	carwmbB1088
Carg09450	Wax gourd	carwgoB1206
Carg09450	Silver-seed gourd	carcarB145
Carg09450	Silver-seed gourd	carcarB240
Carg09450	Silver-seed gourd	carcarB639
Carg09450	Cucumber (Gy14) v2	carcgybB1008
Carg09450	Cucumber (Gy14) v2	carcgybB1010
Carg09450	Cucurbita maxima (Rimu)	carcmaB1418
Carg09450	Cucurbita maxima (Rimu)	carcmaB1420
Carg09450	Cucurbita moschata (Rifu)	carcmoB1375
Carg09450	Cucurbita moschata (Rifu)	carcmoB1377
Carg09450	Cucurbita pepo (Zucchini)	carcpeB1429
Carg09450	Cucurbita pepo (Zucchini)	carcpeB1430
Carg09450	Wild cucumber (PI 183967)	carcpiB1061