Carg09355 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09355
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S ribosomal protein L39
Location	Cucurbita_argyrosperma_scaffold_018 : 846406 .. 847716 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGGTAACTGGTTCTTCCTTGTACTGATTTTCGTTTTGTTTTCTCGCTTTGGATTTATTGTGCATTACACTTTCGGTTGATTTTCTTAAACGTGCGCAGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTCTCTACTCTTCCGTTTTCTTTTACTCAATGTTCTCGTTTCATTATTTCTCATTTCAAAATCTAACGCTGCATTTTGATGTATATTTCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG

mRNA sequence

AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG

Coding sequence (CDS)

AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGA

Protein sequence

RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of Carg09355 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-58
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL 60
           RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVAL
Sbjct: 12  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVAL 71

Query: 61  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 72  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 130

[Close]

BLAST of Carg09355 vs. NCBI nr
Match: KGN62980.1 (hypothetical protein Csa_2G382530 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 54  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 113
           C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 12  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71

Query: 114 RRTKLGF 120
           RRTKLGF
Sbjct: 72  RRTKLGF 78

[Close]

BLAST of Carg09355 vs. NCBI nr
Match: PNS93893.1 (hypothetical protein POPTR_018G112300v3 [Populus trichocarpa] >PNS93895.1 hypothetical protein POPTR_018G112300v3 [Populus trichocarpa])

HSP 1 Score: 113.6 bits (283), Expect = 4.6e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 49  RVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 108
           RVS++   F    +  R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAK
Sbjct: 34  RVSIAIGCFSLQPSSPRPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAK 93

Query: 109 RRHWRRTKLGF 120
           RRHWRRTKLGF
Sbjct: 94  RRHWRRTKLGF 104

[Close]

BLAST of Carg09355 vs. NCBI nr
Match: PNT33858.1 (hypothetical protein POPTR_006G260900v3 [Populus trichocarpa])

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 58  VALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 117
           VA  A  + +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKL
Sbjct: 29  VAAEADQKQAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 88

Query: 118 GF 120
           GF
Sbjct: 89  GF 90

[Close]

BLAST of Carg09355 vs. NCBI nr
Match: RCV30551.1 (hypothetical protein SETIT_6G104600v2 [Setaria italica])

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 44  RFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 98

[Close]

BLAST of Carg09355 vs. TAIR10
Match: AT4G31985.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. TAIR10
Match: AT3G02190.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. TAIR10
Match: AT2G25210.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 77  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]

BLAST of Carg09355 vs. Swiss-Prot
Match: sp|Q6KAJ8|RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. Swiss-Prot
Match: sp|P51426|RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. Swiss-Prot
Match: sp|P51425|RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. Swiss-Prot
Match: sp|Q5SMI4|RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. Swiss-Prot
Match: sp|P51424|RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg09355 vs. TrEMBL
Match: tr|A0A0A0LM35|A0A0A0LM35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 54  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 113
           C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 12  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71

Query: 114 RRTKLGF 120
           RRTKLGF
Sbjct: 72  RRTKLGF 78

[Close]

BLAST of Carg09355 vs. TrEMBL
Match: tr|U5FJ51|U5FJ51_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G112300v3 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 49  RVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 108
           RVS++   F    +  R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAK
Sbjct: 34  RVSIAIGCFSLQPSSPRPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAK 93

Query: 109 RRHWRRTKLGF 120
           RRHWRRTKLGF
Sbjct: 94  RRHWRRTKLGF 104

[Close]

BLAST of Carg09355 vs. TrEMBL
Match: tr|A0A2K2A8K5|A0A2K2A8K5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G260900v3 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.2e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 58  VALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 117
           VA  A  + +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKL
Sbjct: 29  VAAEADQKQAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 88

Query: 118 GF 120
           GF
Sbjct: 89  GF 90

[Close]

BLAST of Carg09355 vs. TrEMBL
Match: tr|K3YM29|K3YM29_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101779113 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 16  RFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 70

[Close]

BLAST of Carg09355 vs. TrEMBL
Match: tr|A0A2P5AKY6|A0A2P5AKY6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17  RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

The following BLAST results are available for this feature:

BLAST of Carg09355 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962571.1	1.4e-58	98.32	uncharacterized protein LOC111462968 [Cucurbita moschata]	[more]
KGN62980.1	2.6e-25	94.03	hypothetical protein Csa_2G382530 [Cucumis sativus]	[more]
PNS93893.1	4.6e-22	78.87	hypothetical protein POPTR_018G112300v3 [Populus trichocarpa] >PNS93895.1 hypoth...	[more]
PNT33858.1	7.8e-22	87.10	hypothetical protein POPTR_006G260900v3 [Populus trichocarpa]	[more]
RCV30551.1	2.3e-21	94.55	hypothetical protein SETIT_6G104600v2 [Setaria italica]	[more]

BLAST of Carg09355 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	1.1e-22	94.12	Ribosomal protein L39 family protein	[more]
AT3G02190.1	3.6e-21	90.20	Ribosomal protein L39 family protein	[more]
AT2G25210.1	9.8e-19	97.67	Ribosomal protein L39 family protein	[more]

BLAST of Carg09355 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6KAJ8\|RL391_ORYSJ	4.1e-22	96.08	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
sp\|P51426\|RL392_ORYSJ	4.1e-22	96.08	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
sp\|P51425\|RL39_MAIZE	4.1e-22	96.08	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
sp\|Q5SMI4\|RL393_ORYSJ	1.2e-21	94.12	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
sp\|P51424\|RL391_ARATH	2.0e-21	94.12	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of Carg09355 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM35\|A0A0A0LM35_CUCSA	1.7e-25	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1	[more]
tr\|U5FJ51\|U5FJ51_POPTR	3.0e-22	78.87	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G112300v3 PE=...	[more]
tr\|A0A2K2A8K5\|A0A2K2A8K5_POPTR	5.2e-22	87.10	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G260900v3 PE=...	[more]
tr\|K3YM29\|K3YM29_SETIT	1.5e-21	94.55	Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101779113 PE=3 SV=1	[more]
tr\|A0A2P5AKY6\|A0A2P5AKY6_9ROSA	2.0e-21	96.36	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020083	Ribosomal_L39_CS
IPR023626	Ribosomal_L39e_dom_sf
IPR000077	Ribosomal_L39

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09355-RA	Carg09355-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 77..117 e-value: 6.5E-22 score: 76.8
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 60..119
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 69..119 score: 12.866
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	G3DSA:1.10.1620.10		coord: 69..119 e-value: 2.4E-31 score: 109.3
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	SSF48662	Ribosomal protein L39e	coord: 71..118
None	No IPR available	PANTHER	PTHR19970:SF13	SUBFAMILY NOT NAMED	coord: 60..119
None	No IPR available	PRODOM	PD007914		coord: 69..105 e-value: 2.0E-14 score: 187.0
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 98..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09355	Csa2G382530	Cucumber (Chinese Long) v2	carcuB0150
Carg09355	Csa4G652650	Cucumber (Chinese Long) v2	carcuB0156
Carg09355	MELO3C016981	Melon (DHL92) v3.5.1	carmeB0146
Carg09355	MELO3C011285	Melon (DHL92) v3.5.1	carmeB0143
Carg09355	ClCG05G016540	Watermelon (Charleston Gray)	carwcgB0135
Carg09355	ClCG08G013600	Watermelon (Charleston Gray)	carwcgB0137
Carg09355	CSPI02G23800	Wild cucumber (PI 183967)	carcpiB0155
Carg09355	CSPI04G26440	Wild cucumber (PI 183967)	carcpiB0161
Carg09355	Cucsa.162700	Cucumber (Gy14) v1	carcgyB0171
Carg09355	Cucsa.271730	Cucumber (Gy14) v1	carcgyB0173
Carg09355	CmaCh12G003550	Cucurbita maxima (Rimu)	carcmaB0183
Carg09355	CmaCh05G003590	Cucurbita maxima (Rimu)	carcmaB0189
Carg09355	CmoCh09G004310	Cucurbita moschata (Rifu)	carcmoB0191
Carg09355	CmoCh05G003630	Cucurbita moschata (Rifu)	carcmoB0196
Carg09355	CmoCh12G003070	Cucurbita moschata (Rifu)	carcmoB0192
Carg09355	Lsi04G020920	Bottle gourd (USVL1VR-Ls)	carlsiB126
Carg09355	Lsi08G012330	Bottle gourd (USVL1VR-Ls)	carlsiB128
Carg09355	Cp4.1LG11g02910	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09355	Cp4.1LG07g03120	Cucurbita pepo (Zucchini)	carcpeB0205
Carg09355	CsGy4G024800	Cucumber (Gy14) v2	carcgybB0154
Carg09355	MELO3C011285.2	Melon (DHL92) v3.6.1	carmedB0147
Carg09355	MELO3C016981.2	Melon (DHL92) v3.6.1	carmedB0150
Carg09355	CsaV3_4G036790	Cucumber (Chinese Long) v3	carcucB0164
Carg09355	CsaV3_2G032350	Cucumber (Chinese Long) v3	carcucB0159
Carg09355	Cla97C05G097520	Watermelon (97103) v2	carwmbB0147
Carg09355	Bhi04G000025	Wax gourd	carwgoB0173
Carg09355	Bhi09G002451	Wax gourd	carwgoB0180

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09355	Carg02856	Silver-seed gourd	carcarB163
Carg09355	Carg03946	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09355	Cucumber (Gy14) v2	carcgybB0148
Carg09355	Cucurbita maxima (Rimu)	carcmaB0182
Carg09355	Cucurbita pepo (Zucchini)	carcpeB0204
Carg09355	Watermelon (Charleston Gray)	carwcgB0136
Carg09355	Watermelon (97103) v1	carwmB0133
Carg09355	Watermelon (97103) v1	carwmB0136
Carg09355	Watermelon (97103) v2	carwmbB0149