Carg02856 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02856
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S ribosomal protein L39
Location	Cucurbita_argyrosperma_scaffold_008 : 412494 .. 413839 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGATTACCCTTCTCAGTAGAGCGTATAAAGCTTCTTCGCTGCTAATAGGGTTTTTTATAATCCCGCCATCTGCTTCCAAGCTCGCCGCCGATTGCCGGAACTCGAAAATGGTACGTGTTGTTATTCGACTCTCTGAATGTTTTTCCGTTTTAACTTGGTGATATTCATTGTTTTCTAATGGATGATTGAAATTGTGTGTCTGTAATTTGATTTTCTCTTCTCTTCCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGGTATTAAGCCTAATTTATTTGAATCTGCTTAATTTCATTCTAATCTCTCTCCATTTCTACTTTCGACTGGATTACAGATACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTAATCTTCAATGTTCATTTACCTTGACTTTGTTAAGATTGAGAACTTGAATTTTCGTACTATTTTTGTAGTTGAGCAACTGAAATCTAGTTCATCTGATATTTTTGTTTAATCATCACTACACTCAAGTTTGAAGTGCTTTCGAATGGAGTGAATTTACTGTCGATGGTTGTCTGTGGTATAAACGTTAATGGCATTTGCTTGCTCCTGTTCTCCAAGGATTTAAACGAGATCGATAGGCATTCTTTGAATCTGATCGAAGTCTAGAGATTCTTGAAAACTTTTTAAATCAACAAATAACCATTTTCCACTTCCTAGCAACGTTATAAATTTTAGGATTTAGCTTCGTCCTTGTTTTATCGATAAATCTGAGTAGTTTGGGTTGAGCCAATTCATAAAACTCTGAGGCCAAAATATACTCAGAATTCATAACTGACCTTCGTTTACAGTGAAAGATAACATAGAAAATCCAACTATCTTATCCGTGTTGAGACTTTGTCAATGGTTCCAAAGAGAAAATTCTTTGAGATTCCGTTCTGTAGGATACTTGTTAATATCATTTCGACCTTGAACAAGAACCAATCTATATTTTCTAAGGCTCTACCTCTGTGTCATTGAATTCTGAAGCACTTACAACTTTAGTTGATCTAAACAGAGTAGTCTTCGTCTAGGAAGTCGGTAGAGGTAGACCAGTCGATGGTTCCGAAGAGAACTTTATAGTTGATCATTTCGACTTTGTCGATGGTTCCGAAGAGAATTCCTTGAGATTCCCTTCTGTAGAATACTTGTTAATATCATTTCGACCTTGAACAAGAACCGATCTTTATGCTCTTTAAGTTTCTACAGCTGTGTCATTGAATTCCATAGC

mRNA sequence

TCGATTACCCTTCTCAGTAGAGCGTATAAAGCTTCTTCGCTGCTAATAGGGTTTTTTATAATCCCGCCATCTGCTTCCAAGCTCGCCGCCGATTGCCGGAACTCGAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGATACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTAATCTTCAATGTTCATTTACCTTGACTTTGTTAAGATTGAGAACTTGAATTTTCGTACTATTTTTGTAGTTGAGCAACTGAAATCTAGTTCATCTGATATTTTTGTTTAATCATCACTACACTCAAGTTTGAAGTGCTTTCGAATGGAGTGAATTTACTGTCGATGGTTGTCTGTGGTATAAACGTTAATGGCATTTGCTTGCTCCTGTTCTCCAAGGATTTAAACGAGATCGATAGGCATTCTTTGAATCTGATCGAAGTCTAGAGATTCTTGAAAACTTTTTAAATCAACAAATAACCATTTTCCACTTCCTAGCAACGTTATAAATTTTAGGATTTAGCTTCGTCCTTGTTTTATCGATAAATCTGAGTAGTTTGGGTTGAGCCAATTCATAAAACTCTGAGGCCAAAATATACTCAGAATTCATAACTGACCTTCGTTTACAGTGAAAGATAACATAGAAAATCCAACTATCTTATCCGTGTTGAGACTTTGTCAATGGTTCCAAAGAGAAAATTCTTTGAGATTCCGTTCTGTAGGATACTTGTTAATATCATTTCGACCTTGAACAAGAACCAATCTATATTTTCTAAGGCTCTACCTCTGTGTCATTGAATTCTGAAGCACTTACAACTTTAGTTGATCTAAACAGAGTAGTCTTCGTCTAGGAAGTCGGTAGAGGTAGACCAGTCGATGGTTCCGAAGAGAACTTTATAGTTGATCATTTCGACTTTGTCGATGGTTCCGAAGAGAATTCCTTGAGATTCCCTTCTGTAGAATACTTGTTAATATCATTTCGACCTTGAACAAGAACCGATCTTTATGCTCTTTAAGTTTCTACAGCTGTGTCATTGAATTCCATAGC

Coding sequence (CDS)

TCGATTACCCTTCTCAGTAGAGCGTATAAAGCTTCTTCGCTGCTAATAGGGTTTTTTATAATCCCGCCATCTGCTTCCAAGCTCGCCGCCGATTGCCGGAACTCGAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGATACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA

Protein sequence

SITLLSRAYKASSLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of Carg02856 vs. NCBI nr
Match: KGN62980.1 (hypothetical protein Csa_2G382530 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-24
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 28 LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87
          +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 19 VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

[Close]

BLAST of Carg02856 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 28  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87
           LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 71  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 130

[Close]

BLAST of Carg02856 vs. NCBI nr
Match: CBI21094.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 115.5 bits (288), Expect = 8.8e-23
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 16  IGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA 75
           +GF     S+  LAAD   +KMPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNA
Sbjct: 41  LGFSPTSLSSPDLAADLSTAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNA 100

Query: 76  KRRHWRRTKLGF 88
           KRRHWRRTKLGF
Sbjct: 101 KRRHWRRTKLGF 112

[Close]

BLAST of Carg02856 vs. NCBI nr
Match: PNS93893.1 (hypothetical protein POPTR_018G112300v3 [Populus trichocarpa] >PNS93895.1 hypothetical protein POPTR_018G112300v3 [Populus trichocarpa])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 13  SLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR 72
           S+ IG F + PS+       R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIR
Sbjct: 36  SIAIGCFSLQPSSP------RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIR 95

Query: 73  YNAKRRHWRRTKLGF 88
           YNAKRRHWRRTKLGF
Sbjct: 96  YNAKRRHWRRTKLGF 104

[Close]

BLAST of Carg02856 vs. NCBI nr
Match: RCV30551.1 (hypothetical protein SETIT_6G104600v2 [Setaria italica])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 17 GFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 76
          GF    P       DCR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAK
Sbjct: 28 GFSPPHPPPPLFVLDCRFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAK 87

Query: 77 RRHWRRTKLGF 88
          RRHWRRTKLGF
Sbjct: 88 RRHWRRTKLGF 98

[Close]

BLAST of Carg02856 vs. TAIR10
Match: AT4G31985.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. TAIR10
Match: AT3G02190.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. TAIR10
Match: AT2G25210.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 45 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]

BLAST of Carg02856 vs. Swiss-Prot
Match: sp|Q6KAJ8|RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. Swiss-Prot
Match: sp|P51426|RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. Swiss-Prot
Match: sp|P51425|RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. Swiss-Prot
Match: sp|Q5SMI4|RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.7e-22
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. Swiss-Prot
Match: sp|P51424|RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg02856 vs. TrEMBL
Match: tr|A0A0A0LM35|A0A0A0LM35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-24
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 28 LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87
          +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 19 VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

[Close]

BLAST of Carg02856 vs. TrEMBL
Match: tr|U5FJ51|U5FJ51_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G112300v3 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 13  SLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR 72
           S+ IG F + PS+       R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIR
Sbjct: 36  SIAIGCFSLQPSSP------RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIR 95

Query: 73  YNAKRRHWRRTKLGF 88
           YNAKRRHWRRTKLGF
Sbjct: 96  YNAKRRHWRRTKLGF 104

[Close]

BLAST of Carg02856 vs. TrEMBL
Match: tr|K3YM29|K3YM29_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101779113 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 23 PSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRR 82
          P       DCR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRR
Sbjct: 6  PPPPLFVLDCRFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRR 65

Query: 83 TKLGF 88
          TKLGF
Sbjct: 66 TKLGF 70

[Close]

BLAST of Carg02856 vs. TrEMBL
Match: tr|A0A2K2A8K5|A0A2K2A8K5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G260900v3 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 30 ADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 88
          AD + +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 33 ADQKQAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 90

[Close]

BLAST of Carg02856 vs. TrEMBL
Match: tr|A0A2P5AKY6|A0A2P5AKY6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-22
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 21 IPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 80
          +PPS ++     R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 7  VPPSQARDLD--RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 66

Query: 81 RRTKLGF 88
          RRTKLGF
Sbjct: 67 RRTKLGF 71

The following BLAST results are available for this feature:

BLAST of Carg02856 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62980.1	6.1e-24	95.00	hypothetical protein Csa_2G382530 [Cucumis sativus]	[more]
XP_022962571.1	3.9e-23	95.00	uncharacterized protein LOC111462968 [Cucurbita moschata]	[more]
CBI21094.3	8.8e-23	79.17	unnamed protein product, partial [Vitis vinifera]	[more]
PNS93893.1	1.1e-22	77.33	hypothetical protein POPTR_018G112300v3 [Populus trichocarpa] >PNS93895.1 hypoth...	[more]
RCV30551.1	1.5e-22	78.87	hypothetical protein SETIT_6G104600v2 [Setaria italica]	[more]

BLAST of Carg02856 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	8.2e-23	94.12	Ribosomal protein L39 family protein	[more]
AT3G02190.1	2.6e-21	90.20	Ribosomal protein L39 family protein	[more]
AT2G25210.1	7.2e-19	97.67	Ribosomal protein L39 family protein	[more]

BLAST of Carg02856 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6KAJ8\|RL391_ORYSJ	3.0e-22	96.08	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
sp\|P51426\|RL392_ORYSJ	3.0e-22	96.08	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
sp\|P51425\|RL39_MAIZE	3.0e-22	96.08	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
sp\|Q5SMI4\|RL393_ORYSJ	8.7e-22	94.12	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
sp\|P51424\|RL391_ARATH	1.5e-21	94.12	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of Carg02856 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM35\|A0A0A0LM35_CUCSA	4.0e-24	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1	[more]
tr\|U5FJ51\|U5FJ51_POPTR	7.6e-23	77.33	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G112300v3 PE=...	[more]
tr\|K3YM29\|K3YM29_SETIT	1.7e-22	83.08	Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101779113 PE=3 SV=1	[more]
tr\|A0A2K2A8K5\|A0A2K2A8K5_POPTR	2.2e-22	91.38	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G260900v3 PE=...	[more]
tr\|A0A2P5AKY6\|A0A2P5AKY6_9ROSA	4.9e-22	83.58	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020083	Ribosomal_L39_CS
IPR000077	Ribosomal_L39
IPR023626	Ribosomal_L39e_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02856-RA	Carg02856-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	G3DSA:1.10.1620.10		coord: 37..87 e-value: 1.1E-31 score: 110.4
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	SSF48662	Ribosomal protein L39e	coord: 39..86
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 45..85 e-value: 3.2E-22 score: 77.8
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 27..87
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 37..87 score: 12.866
None	No IPR available	PANTHER	PTHR19970:SF13	SUBFAMILY NOT NAMED	coord: 27..87
None	No IPR available	PRODOM	PD007914		coord: 37..73 e-value: 3.0E-14 score: 184.0
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 66..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02856	Csa2G382530	Cucumber (Chinese Long) v2	carcuB0654
Carg02856	Csa4G652650	Cucumber (Chinese Long) v2	carcuB0656
Carg02856	MELO3C016981	Melon (DHL92) v3.5.1	carmeB0633
Carg02856	MELO3C011285	Melon (DHL92) v3.5.1	carmeB0629
Carg02856	ClCG05G016540	Watermelon (Charleston Gray)	carwcgB0613
Carg02856	ClCG08G013600	Watermelon (Charleston Gray)	carwcgB0618
Carg02856	CSPI04G26440	Wild cucumber (PI 183967)	carcpiB0666
Carg02856	CSPI02G23800	Wild cucumber (PI 183967)	carcpiB0663
Carg02856	Cucsa.162700	Cucumber (Gy14) v1	carcgyB0709
Carg02856	Cucsa.271730	Cucumber (Gy14) v1	carcgyB0710
Carg02856	CmaCh09G004260	Cucurbita maxima (Rimu)	carcmaB0889
Carg02856	CmaCh05G003590	Cucurbita maxima (Rimu)	carcmaB0901
Carg02856	CmaCh12G003550	Cucurbita maxima (Rimu)	carcmaB0893
Carg02856	CmoCh09G004310	Cucurbita moschata (Rifu)	carcmoB0865
Carg02856	CmoCh05G003630	Cucurbita moschata (Rifu)	carcmoB0878
Carg02856	CmoCh12G003070	Cucurbita moschata (Rifu)	carcmoB0869
Carg02856	Lsi04G020920	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02856	Lsi08G012330	Bottle gourd (USVL1VR-Ls)	carlsiB580
Carg02856	Cp4.1LG11g02910	Cucurbita pepo (Zucchini)	carcpeB0895
Carg02856	Cp4.1LG07g03120	Cucurbita pepo (Zucchini)	carcpeB0908
Carg02856	CsGy4G024800	Cucumber (Gy14) v2	carcgybB0633
Carg02856	MELO3C011285.2	Melon (DHL92) v3.6.1	carmedB0637
Carg02856	MELO3C016981.2	Melon (DHL92) v3.6.1	carmedB0642
Carg02856	CsaV3_4G036790	Cucumber (Chinese Long) v3	carcucB0667
Carg02856	CsaV3_2G032350	Cucumber (Chinese Long) v3	carcucB0665
Carg02856	Cla97C05G097520	Watermelon (97103) v2	carwmbB0659
Carg02856	Cla97C08G157000	Watermelon (97103) v2	carwmbB0665
Carg02856	Bhi04G000025	Wax gourd	carwgoB0750
Carg02856	Bhi09G002451	Wax gourd	carwgoB0754

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02856	Carg09355	Silver-seed gourd	carcarB163
Carg02856	Carg03946	Silver-seed gourd	carcarB558

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02856	Wax gourd	carwgoB0756
Carg02856	Cucurbita pepo (Zucchini)	carcpeB0897
Carg02856	Silver-seed gourd	carcarB154
Carg02856	Silver-seed gourd	carcarB553
Carg02856	Cucumber (Gy14) v2	carcgybB0631
Carg02856	Cucurbita maxima (Rimu)	carcmaB0890
Carg02856	Cucurbita maxima (Rimu)	carcmaB0891
Carg02856	Cucurbita maxima (Rimu)	carcmaB0894
Carg02856	Cucurbita moschata (Rifu)	carcmoB0866
Carg02856	Cucurbita moschata (Rifu)	carcmoB0867
Carg02856	Cucurbita moschata (Rifu)	carcmoB0870
Carg02856	Cucurbita pepo (Zucchini)	carcpeB0904
Carg02856	Cucurbita pepo (Zucchini)	carcpeB0905
Carg02856	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02856	Bottle gourd (USVL1VR-Ls)	carlsiB573
Carg02856	Bottle gourd (USVL1VR-Ls)	carlsiB578
Carg02856	Watermelon (Charleston Gray)	carwcgB0612
Carg02856	Watermelon (97103) v1	carwmB0629
Carg02856	Watermelon (97103) v1	carwmB0630
Carg02856	Watermelon (97103) v2	carwmbB0658