Carg08974 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08974
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	bet1-like SNARE 1-1
Location	Cucurbita_argyrosperma_scaffold_020 : 1036071 .. 1038619 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATCTCTTACTCCCCCACGTCAAGACTCGCCGATCGTCTCTCTTCGTCACCGTTCCTAGTCTCGTCGCTCCGTCAGTTCTCAAACTTTCAGCTGCCCGACAATTGGTACGTTTTTCTTTCATCTCCTTCCTTCTAAATCTCTCTCGAATTTCAACTCCTCTTCCACTCGTGATCTTCGAAGTCCTTTTCTCGATGTTCTTTTCTCTTCGATTCTTTGCTGCTGCATCCATATATTTATTGATTTTTAATTGTATTTCCTTCCGATCAACTTCTACTTCAATAATCTGCAAATCCTCAACAGGGTAGCGCCAATTCAACAGATCGAATAATCTTTGATTGCGAATCCAAGAACACATAGGGCTGTGCGTGGAATCTGTTTCGTCCCGAGATAGACATGAACGCCAGAAGGTTTTTCTTGAATCTTTCAATCTTTATCTTAGTTCTTCAGGCCATTTAAGTATCTTTCCTATCGATCAAACCACGCGTGACGCCAGTTACTTGTTTGTGTGAAATTTACATTTACGATTCAATGTTGTGTTGCTATATTATTGGCTACTAGATCTCGATAGACCGATAGCTCGATAAATCTGAGTCCGTATCTGGTAGAAGGGTTCAATGAGTAATTCCAAGTTTTGGGACTTTACTTATATTATTAGAATTGAATTCTCTTGAGGAATGTTTCAGTCCAGATGCATTAGAACGTTGCAACATCTGAAGTGTACTCTTTTACTTCTATAGGGCTCGGGTTTTTAATCATTTTTAAGCATTCTTCTTTCTGTTTAAGACTCTTCATACTGATATAGTCGTGAAATTCAAGATCTCTATTCTATAGATTGGGTAACTTTTGCCCCTTTATGTTATGCTATGCCTTTCTATGCGTGTACTTGTATAAGTCGTACTGTTAAGTGATTTAACATTAACAACTTATATCGTTTTGGATAATTTTCTACTAATCCAGAATTATCAGGATGTACTCAATTATCGAAGATAAGTCATGGTGAAATGTTTATGGTGGAAATAAACTTTGTTTCTTATATTTTAATTCATCTTTGATATGAGTGTGGACATTTTCTGATTTTTGAATCTTTAGTTCTCAATTCTTTCTTAAACTTTAGTCAAAATACAATTTACTTTCCCTCATGCACTTATATGCACATGCACCCTTGATAGTTGAATGGAAGTTCTTAAATTCATTTTTTTAATCACAAACTGAAGAATGTATTTTTCAGTACCAAGTTGATTTTTATGAACTGAACCTTAGGTTGATCTTGCTATGTGCTGGTCGTTCTTCTTGTAATAGTATCTCTTGGAGTGCAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGGTATTTAATTTCTTACCCAGTCTTAGTCACCAATCTTTGAAGATTGATTCGGTAGAAACAGAGAAAGAATTCCGCACCTATAACATTATGCAATAATTGTTGAGACCAAGTTCTTCACCTACAATTTGCTGCAATTATTGTCGAGAATCAACTCTGCACGTAGAATATGTTGCAATTATTGTGAACAAATTCTGCACCTATAATATGCTGCAATTTATTTTTGAGAACATAGAGGATGAAAATACTTTCCAATTTGTGATTGTATATTGTTCAAGAAAAACACACGAGGGATTATTACTAAATATATATGATTGATAGAAAACATAAACTATGCTATTTTTGAACCAAAGAAATGGTAATGATGGCCGAGAACGATATATTCTATTTCCTGAATCGCATTCAAATTGAAAGTGTTATTTCAACAGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATGCTGGATAGGATGGTATTATGTCAACTCAAGTGTCTTACGCAGTTCTTAGTGTTATTATCAACTGAGAACTAATTTCTTGCATGTTTTGGTTCAGGGTAATGATATGGATTCATCAAGGGGAGTGTTGTCAGGCACTATGGATCGATTCAAGACGGTATTGCCATATTCACAAGAACAATTCATTCCACACTTTCGACACTCCTTTTCATCGTTTTTGACATTAATTTCAATATGTTTAGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGGTAATTTTTCCATTTGGATATCATCAAAAGAAGTCGAGCTTGGGCTCTGGATGGAAGACAATGATCAGCACTGCTGCTTAGTTCTATGAGAGTATTAGTTGTAACATTGGCACAGCTGTTCTGTTGATGCCTGTGTGAATATGTTTTCCTTGTGTACCAAAATTGAAGTTGGAAAGAGTTTGGAACCAAAATATCATCTGCAGCTCTCCATTAAGCTGACATTGATGAATATAATCAGCAAACCAGTTTGTTACACCAGAGTTTTATCTGCCTTCCCTGATTAG

mRNA sequence

TTTATCTCTTACTCCCCCACGTCAAGACTCGCCGATCGTCTCTCTTCGTCACCGTTCCTAGTCTCGTCGCTCCGTCAGTTCTCAAACTTTCAGCTGCCCGACAATTGGGTAGCGCCAATTCAACAGATCGAATAATCTTTGATTGCGAATCCAAGAACACATAGGGCTGTGCGTGGAATCTGTTTCGTCCCGAGATAGACATGAACGCCAGAAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATGCTGGATAGGATGGGTAATGATATGGATTCATCAAGGGGAGTGTTGTCAGGCACTATGGATCGATTCAAGACGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGCTGTTCTGTTGATGCCTGTGTGAATATGTTTTCCTTGTGTACCAAAATTGAAGTTGGAAAGAGTTTGGAACCAAAATATCATCTGCAGCTCTCCATTAAGCTGACATTGATGAATATAATCAGCAAACCAGTTTGTTACACCAGAGTTTTATCTGCCTTCCCTGATTAG

Coding sequence (CDS)

ATGAACGCCAGAAGGGAACTACGTAACAATAGGGTTTCTCTCTTTGATGGCATTGAGGAGGGTGGTGTTAGGGCCTCATCTTCATACTCCTCCCATGAAATTGAGGAACAGGATAATGAAACAGCATTGGAAGGCTTGCAAGACAGAGTCCTTCTATTGAAAAGGTTGACAGGTGACATAAATGAGGAGGTGGAGAGTCATAACCGCATGCTGGATAGGATGGGTAATGATATGGATTCATCAAGGGGAGTGTTGTCAGGCACTATGGATCGATTCAAGACGGTATTTGATCCGAAGTCGAGCCCGAAGATGTTCTCGCTAGTCGTACTTTTCGTGGCAATTTTCTTCATTGTGTACTATCTCACAAGCTGTTCTGTTGATGCCTGTGTGAATATGTTTTCCTTGTGTACCAAAATTGAAGTTGGAAAGAGTTTGGAACCAAAATATCATCTGCAGCTCTCCATTAAGCTGACATTGATGAATATAATCAGCAAACCAGTTTGTTACACCAGAGTTTTATCTGCCTTCCCTGATTAG

Protein sequence

MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDINEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYYLTSCSVDACVNMFSLCTKIEVGKSLEPKYHLQLSIKLTLMNIISKPVCYTRVLSAFPD

Homology

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BLAST of Carg08974 vs. NCBI nr
Match: XP_022931255.1 (bet1-like SNARE 1-1 [Cucurbita moschata] >XP_023532121.1 bet1-like SNARE 1-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

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BLAST of Carg08974 vs. NCBI nr
Match: XP_022995699.1 (bet1-like SNARE 1-1 [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNR+LDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY
Sbjct: 61  NEEVESHNRILDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

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BLAST of Carg08974 vs. NCBI nr
Match: XP_022146012.1 (bet1-like SNARE 1-1 [Momordica charantia] >XP_022146013.1 bet1-like SNARE 1-1 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 6.1e-55
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRE+RNNRV+LFDGIEEGGVRASSS+SSHEIEE DNE ALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARREMRNNRVALFDGIEEGGVRASSSFSSHEIEEHDNEAALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLV LFVAIFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVALFVAIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

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BLAST of Carg08974 vs. NCBI nr
Match: XP_022963635.1 (bet1-like SNARE 1-1 [Cucurbita moschata] >XP_022967416.1 bet1-like SNARE 1-1 [Cucurbita maxima] >XP_023553595.1 bet1-like SNARE 1-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 116/122 (95.08%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRV+LFDGIEEGGVRASSSYSSHEIEE DNE AL GLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVALFDGIEEGGVRASSSYSSHEIEEHDNEAALGGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKS PKMFSLV LFVAIFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSRPKMFSLVALFVAIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

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BLAST of Carg08974 vs. NCBI nr
Match: XP_004151976.1 (PREDICTED: bet1-like SNARE 1-1 [Cucumis sativus] >KGN57937.1 hypothetical protein Csa_3G398950 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRV+LFDGIEEGGVRAS SYSSHEIEE DNE ALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVALFDGIEEGGVRASPSYSSHEIEEHDNEAALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKS PKMFSLV LFV IFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSRPKMFSLVALFVTIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

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BLAST of Carg08974 vs. TAIR10
Match: AT3G58170.1 (BET1P/SFT1P-like protein 14A)

HSP 1 Score: 177.2 bits (448), Expect = 9.1e-45
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MN RRE R  R SLFDGIEEGG+RA+SSY SHEI E +NE ALEGLQDRV+LLKRL+GDI
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSY-SHEINEHENERALEGLQDRVILLKRLSGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEV++HNRMLDRMGNDMDSSRG LSGTMDRFKTVF+ KSS +M +LV  FV +F ++YY
Sbjct: 61  NEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 121

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BLAST of Carg08974 vs. TAIR10
Match: AT4G14455.1 (Target SNARE coiled-coil domain protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-32
Identity = 74/124 (59.68%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MNARRELRNNRVSLF---DGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLT 60
           MN RRE R +R SLF   DG+EEG +RASSSY+    +E+DN+ ALE LQDRV  LKR+T
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH---DERDNDEALENLQDRVSFLKRVT 60

Query: 61  GDINEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFI 120
           GDI+EEVE+HNR+LD++GN MDS+RG++SGT++RFK VF+ KS+ K   L+  FV +F I
Sbjct: 61  GDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLI 120

Query: 121 VYYL 122
           +YYL
Sbjct: 121 MYYL 121

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BLAST of Carg08974 vs. Swiss-Prot
Match: sp|Q9M2J9|BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana OX=3702 GN=BET11 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-43
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MN RRE R  R SLFDGIEEGG+RA+SSY SHEI E +NE ALEGLQDRV+LLKRL+GDI
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSY-SHEINEHENERALEGLQDRVILLKRLSGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEV++HNRMLDRMGNDMDSSRG LSGTMDRFKTVF+ KSS +M +LV  FV +F ++YY
Sbjct: 61  NEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 121

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BLAST of Carg08974 vs. Swiss-Prot
Match: sp|Q94CG2|BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana OX=3702 GN=BET12 PE=2 SV=4)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-31
Identity = 74/124 (59.68%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MNARRELRNNRVSLF---DGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLT 60
           MN RRE R +R SLF   DG+EEG +RASSSY+    +E+DN+ ALE LQDRV  LKR+T
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH---DERDNDEALENLQDRVSFLKRVT 60

Query: 61  GDINEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFI 120
           GDI+EEVE+HNR+LD++GN MDS+RG++SGT++RFK VF+ KS+ K   L+  FV +F I
Sbjct: 61  GDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLI 120

Query: 121 VYYL 122
           +YYL
Sbjct: 121 MYYL 121

[Close]

BLAST of Carg08974 vs. Swiss-Prot
Match: sp|O35152|BET1L_RAT (BET1-like protein OS=Rattus norvegicus OX=10116 GN=Bet1l PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 24  RASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDINEEVESHNRMLDRMGNDMDSSRG 83
           RA SS +  EI +++N+   + L  +V  LK L  DI+ + E  NR LD M +D  S  G
Sbjct: 6   RAQSSGAVEEIVDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTG 65

Query: 84  VLSGTMDRFKTVFDPKSSPK--MFSLVVLFVAIFFIVYYLTS 124
           +L+G++ RF TV       +  +  + V+ +  FFI+ YL S
Sbjct: 66  LLTGSVKRFSTVARSGRDTRKLLCGMAVVLIVAFFILSYLFS 107

[Close]

BLAST of Carg08974 vs. Swiss-Prot
Match: sp|O35153|BET1L_MOUSE (BET1-like protein OS=Mus musculus OX=10090 GN=Bet1l PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.1e-06
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 24  RASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDINEEVESHNRMLDRMGNDMDSSRG 83
           RA SS +  +I +++N+   + L  +V  LK L  DI+ + E  NR LD M +D  S  G
Sbjct: 6   RAQSSGAVEDILDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTG 65

Query: 84  VLSGTMDRFKTVF-DPKSSPKMF-SLVVLFVAIFFIVYYLTS 124
           +L+G++ RF T+    + + K+   + V+ +  FFI+ YL S
Sbjct: 66  LLTGSVKRFSTMARSGRDNRKLLCGMAVVLIVAFFILSYLLS 107

[Close]

BLAST of Carg08974 vs. Swiss-Prot
Match: sp|O15155|BET1_HUMAN (BET1 homolog OS=Homo sapiens OX=9606 GN=BET1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 37/116 (31.90%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 11  RVSLFDGIEEGGV----RASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDINEEVES 70
           R  L +G+  G       A+S YS+    E++NE   E L+ +V  +K L+ +I  EV++
Sbjct: 3   RAGLGEGVPPGNYGNYGYANSGYSAC---EEENERLTESLRSKVTAIKSLSIEIGHEVKT 62

Query: 71  HNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLF-VAIFFIVYYL 122
            N++L  M +  DS+ G L  TM + K +    S  K+   ++LF + +FFI+Y++
Sbjct: 63  QNKLLAEMDSQFDSTTGFLGKTMGKLK-ILSRGSQTKLLCYMMLFSLFVFFIIYWI 114

[Close]

BLAST of Carg08974 vs. TrEMBL
Match: tr|A0A0A0LBA5|A0A0A0LBA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398950 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRV+LFDGIEEGGVRAS SYSSHEIEE DNE ALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVALFDGIEEGGVRASPSYSSHEIEEHDNEAALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKS PKMFSLV LFV IFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSRPKMFSLVALFVTIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

[Close]

BLAST of Carg08974 vs. TrEMBL
Match: tr|A0A1S3BYS3|A0A1S3BYS3_CUCME (bet1-like SNARE 1-1 OS=Cucumis melo OX=3656 GN=LOC103494910 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 7.6e-54
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARRELRNNRV+LFDGIEEGGVRAS SY+SHEIEE DNE ALEGLQDRVLLLKRLTGDI
Sbjct: 1   MNARRELRNNRVALFDGIEEGGVRASPSYTSHEIEEHDNEAALEGLQDRVLLLKRLTGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKS PKMFSLV LFV IFFIVYY
Sbjct: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSRPKMFSLVALFVTIFFIVYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

[Close]

BLAST of Carg08974 vs. TrEMBL
Match: tr|A0A2N9HFS2|A0A2N9HFS2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38667 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 97/122 (79.51%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARR+ RNN+ +LFDGIEEGG+RASSSYSSHEI+EQDNE A++GLQDRV+LLKRL+GDI
Sbjct: 1   MNARRDYRNNKAALFDGIEEGGIRASSSYSSHEIDEQDNERAIDGLQDRVILLKRLSGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEV+SHNRMLDRMGNDMDSSRGVLSGTMDRFK VF+ KSS +MF+LV  FV IF ++YY
Sbjct: 61  NEEVDSHNRMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFVVIFLVIYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

[Close]

BLAST of Carg08974 vs. TrEMBL
Match: tr|A0A2P4JQ04|A0A2P4JQ04_QUESU (Bet1-like snare 1-1 OS=Quercus suber OX=58331 GN=CFP56_45663 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 97/122 (79.51%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MNARR+ RNN+ +LFDGIEEGG+RASSSYSSHEI+E DNE A++GLQDRV+LLKRL+GDI
Sbjct: 1   MNARRDYRNNKAALFDGIEEGGIRASSSYSSHEIDEHDNERAVDGLQDRVILLKRLSGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEVESHNRMLDRMGN+MDSSRGVLSGTMDRFKTVF+ KSS +MF+LV  FV IF ++YY
Sbjct: 61  NEEVESHNRMLDRMGNNMDSSRGVLSGTMDRFKTVFETKSSRRMFTLVASFVVIFLVIYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

[Close]

BLAST of Carg08974 vs. TrEMBL
Match: tr|B9H8J7|B9H8J7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G221600v3 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.4e-46
Identity = 97/122 (79.51%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MNARRELRNNRVSLFDGIEEGGVRASSSYSSHEIEEQDNETALEGLQDRVLLLKRLTGDI 60
           MN+RR++RNNR +LFDGIEEGG+RASSSYSSHEI+EQDNE ALEGLQDRV+LLKRL+GDI
Sbjct: 1   MNSRRDIRNNRAALFDGIEEGGIRASSSYSSHEIDEQDNERALEGLQDRVILLKRLSGDI 60

Query: 61  NEEVESHNRMLDRMGNDMDSSRGVLSGTMDRFKTVFDPKSSPKMFSLVVLFVAIFFIVYY 120
           NEEV++HN MLDRMGNDMDSSRGVLSGTMDRFK VF+ KSS +MF+LV  FV +F I+YY
Sbjct: 61  NEEVDNHNLMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFVVLFLIIYY 120

Query: 121 LT 123
           LT
Sbjct: 121 LT 122

The following BLAST results are available for this feature:

BLAST of Carg08974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931255.1	1.3e-57	100.00	bet1-like SNARE 1-1 [Cucurbita moschata] >XP_023532121.1 bet1-like SNARE 1-1 [Cu...	[more]
XP_022995699.1	3.8e-57	99.18	bet1-like SNARE 1-1 [Cucurbita maxima]	[more]
XP_022146012.1	6.1e-55	95.08	bet1-like SNARE 1-1 [Momordica charantia] >XP_022146013.1 bet1-like SNARE 1-1 [M...	[more]
XP_022963635.1	3.0e-54	95.08	bet1-like SNARE 1-1 [Cucurbita moschata] >XP_022967416.1 bet1-like SNARE 1-1 [Cu...	[more]
XP_004151976.1	5.2e-54	94.26	PREDICTED: bet1-like SNARE 1-1 [Cucumis sativus] >KGN57937.1 hypothetical protei...	[more]

BLAST of Carg08974 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58170.1	9.1e-45	75.41	BET1P/SFT1P-like protein 14A	[more]
AT4G14455.1	1.8e-32	59.68	Target SNARE coiled-coil domain protein	[more]

BLAST of Carg08974 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2J9\|BET11_ARATH	1.6e-43	75.41	Bet1-like SNARE 1-1 OS=Arabidopsis thaliana OX=3702 GN=BET11 PE=1 SV=1	[more]
sp\|Q94CG2\|BET12_ARATH	3.2e-31	59.68	Bet1-like SNARE 1-2 OS=Arabidopsis thaliana OX=3702 GN=BET12 PE=2 SV=4	[more]
sp\|O35152\|BET1L_RAT	1.2e-06	35.29	BET1-like protein OS=Rattus norvegicus OX=10116 GN=Bet1l PE=1 SV=1	[more]
sp\|O35153\|BET1L_MOUSE	6.1e-06	34.31	BET1-like protein OS=Mus musculus OX=10090 GN=Bet1l PE=3 SV=1	[more]
sp\|O15155\|BET1_HUMAN	1.4e-05	31.90	BET1 homolog OS=Homo sapiens OX=9606 GN=BET1 PE=1 SV=1	[more]

BLAST of Carg08974 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBA5\|A0A0A0LBA5_CUCSA	3.4e-54	94.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398950 PE=4 SV=1	[more]
tr\|A0A1S3BYS3\|A0A1S3BYS3_CUCME	7.6e-54	93.44	bet1-like SNARE 1-1 OS=Cucumis melo OX=3656 GN=LOC103494910 PE=4 SV=1	[more]
tr\|A0A2N9HFS2\|A0A2N9HFS2_FAGSY	1.5e-46	79.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38667 PE=4 SV=1	[more]
tr\|A0A2P4JQ04\|A0A2P4JQ04_QUESU	2.6e-46	79.51	Bet1-like snare 1-1 OS=Quercus suber OX=58331 GN=CFP56_45663 PE=4 SV=1	[more]
tr\|B9H8J7\|B9H8J7_POPTR	3.4e-46	79.51	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G221600v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08974-RA	Carg08974-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 28..95 e-value: 3.7E-5 score: 33.2
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 33..95 score: 12.28
None	No IPR available	GENE3D	G3DSA:1.20.5.110		coord: 41..102 e-value: 5.7E-14 score: 53.8
None	No IPR available	PANTHER	PTHR12791	GOLGI SNARE BET1-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR12791:SF38	SUBFAMILY NOT NAMED	coord: 1..122
None	No IPR available	CDD	cd15853	SNARE_Bet1	coord: 36..94 e-value: 4.39709E-20 score: 79.0838
None	No IPR available	SUPERFAMILY	SSF58038	SNARE fusion complex	coord: 29..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08974	Cla005996	Watermelon (97103) v1	carwmB0778
Carg08974	Cla007568	Watermelon (97103) v1	carwmB0785
Carg08974	Csa3G398950	Cucumber (Chinese Long) v2	carcuB0794
Carg08974	ClCG07G000890	Watermelon (Charleston Gray)	carwcgB0760
Carg08974	ClCG06G006820	Watermelon (Charleston Gray)	carwcgB0758
Carg08974	CSPI03G22890	Wild cucumber (PI 183967)	carcpiB0813
Carg08974	Cucsa.053410	Cucumber (Gy14) v1	carcgyB0881
Carg08974	CmaCh08G010960	Cucurbita maxima (Rimu)	carcmaB1089
Carg08974	CmaCh02G017580	Cucurbita maxima (Rimu)	carcmaB1084
Carg08974	CmaCh19G000760	Cucurbita maxima (Rimu)	carcmaB1082
Carg08974	CmoCh19G000870	Cucurbita moschata (Rifu)	carcmoB1055
Carg08974	CmoCh02G018030	Cucurbita moschata (Rifu)	carcmoB1057
Carg08974	Lsi09G012510	Bottle gourd (USVL1VR-Ls)	carlsiB713
Carg08974	Lsi05G009990	Bottle gourd (USVL1VR-Ls)	carlsiB717
Carg08974	Cp4.1LG05g01310	Cucurbita pepo (Zucchini)	carcpeB1099
Carg08974	Cp4.1LG17g01840	Cucurbita pepo (Zucchini)	carcpeB1096
Carg08974	Cp4.1LG15g00620	Cucurbita pepo (Zucchini)	carcpeB1094
Carg08974	CsGy3G021890	Cucumber (Gy14) v2	carcgybB0771
Carg08974	CsaV3_3G022610	Cucumber (Chinese Long) v3	carcucB0816
Carg08974	Cla97C06G116420	Watermelon (97103) v2	carwmbB0819
Carg08974	Cla97C07G129170	Watermelon (97103) v2	carwmbB0821
Carg08974	Bhi12G001457	Wax gourd	carwgoB0912
Carg08974	Bhi05G000171	Wax gourd	carwgoB0916

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08974	Carg16867	Silver-seed gourd	carcarB599
Carg08974	Carg10951	Silver-seed gourd	carcarB615

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08974	Silver-seed gourd	carcarB264
Carg08974	Silver-seed gourd	carcarB273
Carg08974	Silver-seed gourd	carcarB610
Carg08974	Silver-seed gourd	carcarB614
Carg08974	Cucumber (Gy14) v2	carcgybB0770
Carg08974	Cucumber (Gy14) v2	carcgybB0772
Carg08974	Cucumber (Gy14) v1	carcgyB0883
Carg08974	Cucumber (Gy14) v1	carcgyB0892
Carg08974	Cucurbita maxima (Rimu)	carcmaB1074
Carg08974	Cucurbita maxima (Rimu)	carcmaB1075
Carg08974	Cucurbita maxima (Rimu)	carcmaB1085
Carg08974	Cucurbita maxima (Rimu)	carcmaB1086
Carg08974	Cucurbita moschata (Rifu)	carcmoB1049
Carg08974	Cucurbita moschata (Rifu)	carcmoB1052
Carg08974	Cucurbita moschata (Rifu)	carcmoB1058
Carg08974	Cucurbita pepo (Zucchini)	carcpeB1087
Carg08974	Cucurbita pepo (Zucchini)	carcpeB1098
Carg08974	Cucurbita pepo (Zucchini)	carcpeB1101
Carg08974	Wild cucumber (PI 183967)	carcpiB0812
Carg08974	Cucumber (Chinese Long) v2	carcuB0793
Carg08974	Cucumber (Chinese Long) v2	carcuB0795
Carg08974	Cucumber (Chinese Long) v3	carcucB0814
Carg08974	Cucumber (Chinese Long) v3	carcucB0815
Carg08974	Bottle gourd (USVL1VR-Ls)	carlsiB718
Carg08974	Melon (DHL92) v3.5.1	carmeB0778
Carg08974	Melon (DHL92) v3.6.1	carmedB0790
Carg08974	Watermelon (97103) v1	carwmB0782
Carg08974	Watermelon (97103) v2	carwmbB0817
Carg08974	Wax gourd	carwgoB0914