Carg08737 (gene) Silver-seed gourd

Overview
NameCarg08737
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMethyladenine glycosylase
LocationCucurbita_argyrosperma_scaffold_057 : 737185 .. 737580 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAAACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTTTATCAAGCAACTATTCGACCAAATTGTTGAATCCTAAAGTGAAGCCCTGCGATGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACGCCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGGTAAGCAAGCTTAA

mRNA sequence

ATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAAACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTTTATCAAGCAACTATTCGACCAAATTGTTGAATCCTAAAGTGAAGCCCTGCGATGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACGCCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGGTAAGCAAGCTTAA

Coding sequence (CDS)

ATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAAACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTTTATCAAGCAACTATTCGACCAAATTGTTGAATCCTAAAGTGAAGCCCTGCGATGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACGCCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGGTAAGCAAGCTTAA

Protein sequence

MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRCGWITPYSGKQA
Homology
[Close]
BLAST of Carg08737 vs. NCBI nr
Match: XP_022935907.1 (uncharacterized protein LOC111442674 [Cucurbita moschata] >XP_022935908.1 uncharacterized protein LOC111442674 [Cucurbita moschata] >XP_022935909.1 uncharacterized protein LOC111442674 [Cucurbita moschata] >XP_022935910.1 uncharacterized protein LOC111442674 [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-64
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESV+R
Sbjct: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVVR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC
Sbjct: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120

Query: 121 GWITPYS 128
           GWITPYS
Sbjct: 121 GWITPYS 127

[Close]
BLAST of Carg08737 vs. NCBI nr
Match: XP_023535246.1 (uncharacterized protein LOC111796735 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKLHSHAKPVLESR ILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR
Sbjct: 1   MSVATKLHSHAKPVLESREILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DN SIGSSCSSDSL S+YSTKLLNPKVKPCDVKPVKAVAAGGDPNVT+TTP LSVPGKRC
Sbjct: 61  DNSSIGSSCSSDSLLSSYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTSTTPSLSVPGKRC 120

Query: 121 GWITPYS 128
           GWITPYS
Sbjct: 121 GWITPYS 127

[Close]
BLAST of Carg08737 vs. NCBI nr
Match: XP_022976629.1 (uncharacterized protein LOC111476975 [Cucurbita maxima] >XP_022976630.1 uncharacterized protein LOC111476975 [Cucurbita maxima] >XP_022976631.1 uncharacterized protein LOC111476975 [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-57
Identity = 120/127 (94.49%), Postives = 120/127 (94.49%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR
Sbjct: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DNISIGSSCSSDSLSSN S KLLNPK     VKPVKAVAAGGDPNVTTTTPRLSVPGKRC
Sbjct: 61  DNISIGSSCSSDSLSSNNSAKLLNPK-----VKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120

Query: 121 GWITPYS 128
           GWITPYS
Sbjct: 121 GWITPYS 122

[Close]
BLAST of Carg08737 vs. NCBI nr
Match: XP_022940560.1 (uncharacterized protein LOC111446125 [Cucurbita moschata] >XP_022940561.1 uncharacterized protein LOC111446125 [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL SHA+PVLESRAILGPGGNRDRAPEKPKCKQE LK + KQNKALP + ESV+R
Sbjct: 1   MSVATKLQSHAEPVLESRAILGPGGNRDRAPEKPKCKQEILKRTVKQNKALPVVSESVVR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DN+S+GSSCSSDSLSSNYS KLLN K KP   KPVK VAAGGD N TTT+P LSV GKRC
Sbjct: 61  DNVSVGSSCSSDSLSSNYSAKLLNLKAKP---KPVKTVAAGGDANATTTSPGLSVAGKRC 120

Query: 121 GWITPYS 128
            WITPYS
Sbjct: 121 DWITPYS 124

[Close]
BLAST of Carg08737 vs. NCBI nr
Match: XP_023523621.1 (uncharacterized protein LOC111787800 [Cucurbita pepo subsp. pepo] >XP_023523622.1 uncharacterized protein LOC111787800 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL SHA+PVLESRAILGPGGNRDRAPEKPKCKQE LK + KQNKALP + ESV+R
Sbjct: 1   MSVATKLQSHAEPVLESRAILGPGGNRDRAPEKPKCKQEILKRTVKQNKALPVVSESVVR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DN+S+GSSCSSDSLSSNYS KLLN K KP   KPVK VAAGGD N TTT+P LSV GKRC
Sbjct: 61  DNVSVGSSCSSDSLSSNYSAKLLNLKAKP---KPVKTVAAGGDANATTTSPGLSVAGKRC 120

Query: 121 GWITPYS 128
            WITPYS
Sbjct: 121 DWITPYS 124

[Close]
BLAST of Carg08737 vs. TrEMBL
Match: tr|A0A0A0LG22|A0A0A0LG22_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855280 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-42
Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL SH KP LE RAILGPGGNRDRAP+ PKCK ETLK +EKQ+KALPAI ESVIR
Sbjct: 1   MSVATKLQSHVKPALEPRAILGPGGNRDRAPQNPKCKPETLKKTEKQSKALPAISESVIR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DN+S+GSSCSSDSLSSNYS KLL P         VK V+AGGD N TTT+P LS+PGKRC
Sbjct: 61  DNVSVGSSCSSDSLSSNYSAKLLKPYA-------VKPVSAGGDSNATTTSPALSLPGKRC 120

Query: 121 GWITPYS 128
            WIT +S
Sbjct: 121 DWITLHS 120

[Close]
BLAST of Carg08737 vs. TrEMBL
Match: tr|A0A1S3CRP1|A0A1S3CRP1_CUCME (probable GMP synthase [glutamine-hydrolyzing] OS=Cucumis melo OX=3656 GN=LOC103503975 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL SHAKP LE RAILGPGGNRDRAP  PKCK ETLK +EKQ+KALP I E VIR
Sbjct: 1   MSVATKLQSHAKPALEPRAILGPGGNRDRAPHNPKCKPETLKKTEKQSKALPVISELVIR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGKRC 120
           DN+S+GSSCSSDSLSSNYS KLL P         VK V+AGGD + TTT+P LS+PGKRC
Sbjct: 61  DNVSVGSSCSSDSLSSNYSVKLLKPYA-------VKPVSAGGDSSATTTSPALSLPGKRC 120

Query: 121 GWITPYS 128
            WIT +S
Sbjct: 121 DWITLHS 120

[Close]
BLAST of Carg08737 vs. TrEMBL
Match: tr|A5BIS5|A5BIS5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033233 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.7e-22
Identity = 66/129 (51.16%), Postives = 81/129 (62.79%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL S AKP+ E R +LGPGGNR R  E+ KCK+E LK  ++  K    +PE+VIR
Sbjct: 1   MSVATKLQSPAKPLSEGRVVLGPGGNRFRVSEEAKCKKEGLKKPQQHRKQSSEVPEAVIR 60

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNP--KVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGK 120
           +N+S  SSCSSDS SS  S K++N   +VK   +KPVK V  G           + VP K
Sbjct: 61  NNLSFESSCSSDSSSSGSSVKMVNSRGRVKRNGLKPVKVVPHG-----------VEVPAK 118

Query: 121 RCGWITPYS 128
           RC WITP S
Sbjct: 121 RCDWITPNS 118

[Close]
BLAST of Carg08737 vs. TrEMBL
Match: tr|F6H1G2|F6H1G2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g12030 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIR 60
           MSVATKL S AKP+ E R +LGPGGNR R  E+ K K+E LK  ++  K    +PE+V+R
Sbjct: 3   MSVATKLQSPAKPLSEGRVVLGPGGNRFRVSEEAKRKKEGLKKPQQHRKQSSEVPEAVVR 62

Query: 61  DNISIGSSCSSDSLSSNYSTKLLNP--KVKPCDVKPVKAVAAGGDPNVTTTTPRLSVPGK 120
           +N+S  SSCSS       S K++N   +VK   +KPVK V  G           + VP K
Sbjct: 63  NNLSFESSCSSXXXXXGSSVKMVNSRGRVKRNGLKPVKVVPHG-----------VEVPAK 120

Query: 121 RCGWITPYS 128
           RC WITP S
Sbjct: 123 RCDWITPNS 120

[Close]
BLAST of Carg08737 vs. TrEMBL
Match: tr|M5Y4H4|M5Y4H4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026563mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = 0 

Query: 1   MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKN-SEKQNKALPAIPESVI 60
           MSVATKL S    + E RA+LGPGGNR R  E PK K E LK   ++  K +  IPE+V+
Sbjct: 1   MSVATKLQS---SICEPRAVLGPGGNRVRVSEAPKRKNEGLKKPPQRPRKPVSEIPEAVV 60

Query: 61  RDNISIGSSCSSDSLSSNYSTKLLNPK--VKPCDVKPVKAVAAGGDPNVTTTTPRLSVPG 120
           R+N+S+ S+CSSD+ SS  S K ++P+  V+   ++P K V+   D  V     + + P 
Sbjct: 61  RNNVSVDSTCSSDTSSSCSSAKTVSPRRTVRHKSLRPAKLVS--DDMEVV----KPAGPP 120

Query: 121 KRCGWITPYS 128
           KRC WITP S
Sbjct: 121 KRCEWITPNS 121

The following BLAST results are available for this feature:
BLAST of Carg08737 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935907.13.1e-6499.21uncharacterized protein LOC111442674 [Cucurbita moschata] >XP_022935908.1 unchar... [more]
XP_023535246.11.2e-6095.28uncharacterized protein LOC111796735 [Cucurbita pepo subsp. pepo][more]
XP_022976629.12.2e-5794.49uncharacterized protein LOC111476975 [Cucurbita maxima] >XP_022976630.1 uncharac... [more]
XP_022940560.11.2e-4780.31uncharacterized protein LOC111446125 [Cucurbita moschata] >XP_022940561.1 unchar... [more]
XP_023523621.11.2e-4780.31uncharacterized protein LOC111787800 [Cucurbita pepo subsp. pepo] >XP_023523622.... [more]
BLAST of Carg08737 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg08737 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg08737 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LG22|A0A0A0LG22_CUCSA6.4e-4273.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855280 PE=4 SV=1[more]
tr|A0A1S3CRP1|A0A1S3CRP1_CUCME2.1e-4071.65probable GMP synthase [glutamine-hydrolyzing] OS=Cucumis melo OX=3656 GN=LOC1035... [more]
tr|A5BIS5|A5BIS5_VITVI5.7e-2251.16Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033233 PE=4 SV=1[more]
tr|F6H1G2|F6H1G2_VITVI5.0e-1846.51Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g12030 PE=4 SV=... [more]
tr|M5Y4H4|M5Y4H4_PRUPE2.0e-1445.38Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026563m... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08737-RACarg08737-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08737Csa3G855280Cucumber (Chinese Long) v2carcuB0111
Carg08737MELO3C003879Melon (DHL92) v3.5.1carmeB0106
Carg08737CSPI03G42480Wild cucumber (PI 183967)carcpiB0116
Carg08737Cucsa.342140Cucumber (Gy14) v1carcgyB0126
Carg08737CmaCh01G018900Cucurbita maxima (Rimu)carcmaB0136
Carg08737CmoCh09G001690Cucurbita moschata (Rifu)carcmoB0144
Carg08737CmoCh01G019530Cucurbita moschata (Rifu)carcmoB0146
Carg08737Lsi04G016410Bottle gourd (USVL1VR-Ls)carlsiB094
Carg08737Cp4.1LG06g01240Cucurbita pepo (Zucchini)carcpeB0154
Carg08737Cp4.1LG02g07420Cucurbita pepo (Zucchini)carcpeB0153
Carg08737CsGy3G040000Cucumber (Gy14) v2carcgybB0111
Carg08737MELO3C003879.2Melon (DHL92) v3.6.1carmedB0108
Carg08737CsaV3_3G044900Cucumber (Chinese Long) v3carcucB0120
Carg08737Cla97C05G100700Watermelon (97103) v2carwmbB0107
Carg08737Bhi11G002157Wax gourdcarwgoB0116
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg08737Carg17129Silver-seed gourdcarcarB125
The following block(s) are covering this gene:
GeneOrganismBlock
Carg08737Silver-seed gourdcarcarB119
Carg08737Silver-seed gourdcarcarB126
Carg08737Cucumber (Gy14) v2carcgybB0110
Carg08737Cucumber (Gy14) v2carcgybB0114
Carg08737Cucumber (Gy14) v1carcgyB0124
Carg08737Cucurbita maxima (Rimu)carcmaB0134
Carg08737Cucurbita maxima (Rimu)carcmaB0135
Carg08737Cucurbita maxima (Rimu)carcmaB0137
Carg08737Cucurbita moschata (Rifu)carcmoB0145
Carg08737Cucurbita moschata (Rifu)carcmoB0147
Carg08737Cucurbita pepo (Zucchini)carcpeB0152
Carg08737Cucurbita pepo (Zucchini)carcpeB0155
Carg08737Wild cucumber (PI 183967)carcpiB0115
Carg08737Cucumber (Chinese Long) v2carcuB0110
Carg08737Cucumber (Chinese Long) v3carcucB0119
Carg08737Bottle gourd (USVL1VR-Ls)carlsiB096
Carg08737Melon (DHL92) v3.5.1carmeB0105
Carg08737Melon (DHL92) v3.6.1carmedB0107
Carg08737Watermelon (Charleston Gray)carwcgB0104
Carg08737Watermelon (Charleston Gray)carwcgB0106
Carg08737Watermelon (97103) v1carwmB0101
Carg08737Watermelon (97103) v1carwmB0102
Carg08737Watermelon (97103) v2carwmbB0109
Carg08737Wax gourdcarwgoB0117