Carg08309 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08309
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptidyl-tRNA hydrolase
Location	Cucurbita_argyrosperma_scaffold_015 : 783988 .. 785266 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATGTGCTACCTTGTGTGAAGATATCATGATTTCTGTAATTTCAGCGTCTCCATTCACTTTCTCCATTTCCAAATCCACGAAGCTCTGTTCGTGTTCGAGGTCTAGGGTTTGGCCCTCTTCTTCACTCAGTCTCCGCTCGCGTAACCGAAATTCGAATCTGTTTAGCTCCGCTTCTATGAGTGAATCCGCTGGAAGTAATTCCGCTCCTCCACCGGACGACGGCGTGGAGAAGACAGCCGATGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATCTGATCGATTCGTGGCCTCTTGGAAGCGTCGTAACTCAGGGATGCCATGCTTCAGTGTCCGCTATTTGGTTGAACAAAGACGATCCTCACACTTCCGAGTACTGTAGTCCACACAATATCGATTCTATGCACAAGGTTAGTCGAACTTTTGATTCCATTTTTAAATCTGATTGTGAAGTCTGGTGCCTCGAACTCGGACGGACAATGTAGTATTCGTGTGCAGCCTTGAACCTTTTCTGTTGATAAGCTGAAAATTTGCTTCGTTGGTGCGCGCGGTGTTAAGTCGGTCTAGATGAGACATTCTGAGCAATTTGGAACTTTCGTGTTGTGGTTCTCGTCGCTTGTTGATTTGTTTAATTCTGGAAAGAACATTTTGCATCTATCAAGCATTTTGGAAGAACAATTGTTTACTGGAAAACTATTTTTGTTTGGGTTCTTGTGTTCTCCATTTGAAGTACATTTTTGCTATTCTGAAGTTCGAGTCCTCCTTGCTCGTTTTGTTTGCTGAATGTTCTGATTTTTCGACCTAATATTCATACGGTTGTATCTGTCTAGGCTCTCCACCGTATTCGTAGAGTCGTAGGGAAAAGAGAGGGTTGTTTTTTTTAGTTCTATAGCTTCCAAGGAATTTTTCACCTCCATTTCGCATTGGCCTGTGTAACCAGCCCCATAGTTAATGCTAACCTCATCATTTCAAGCTTGCAAAACGATTGAACTGCCAATTGGAAGTTTCCTTGCTCATCAGATTCTTATCGTGTGCAACTTAATTAGTTGAAATTACAGTTGTTCTACATTTCATTGATCCCTTAAGTCGTTCTGGACTTCTTGATCCCTGAAGTCAGTACTGACTTTATTTAACTTTATGTAGGTTACTCTTGAGGTGAAGGGAGAAACTCAGATTGTCAACTTGTCGGAGAAACTAAAAGCAAGTTCAATCGCCCACAAACTATGGATAGAACAACCAGAGCATCCCAATTCTTGTCGTGCAACAACTTAA

mRNA sequence

ATGGTTTCATGTGCTACCTTGTGTGAAGATATCATGATTTCTGTAATTTCAGCGTCTCCATTCACTTTCTCCATTTCCAAATCCACGAAGCTCTGTTCGTGTTCGAGGTCTAGGGTTTGGCCCTCTTCTTCACTCAGTCTCCGCTCGCGTAACCGAAATTCGAATCTGTTTAGCTCCGCTTCTATGAGTGAATCCGCTGGAAGTAATTCCGCTCCTCCACCGGACGACGGCGTGGAGAAGACAGCCGATGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATCTGATCGATTCGTGGCCTCTTGGAAGCGTCGTAACTCAGGGATGCCATGCTTCAGTGTCCGCTATTTGGTTGAACAAAGACGATCCTCACACTTCCGAGTACTGTAGTCCACACAATATCGATTCTATGCACAAGGTTACTCTTGAGGTGAAGGGAGAAACTCAGATTGTCAACTTGTCGGAGAAACTAAAAGCAAGTTCAATCGCCCACAAACTATGGATAGAACAACCAGAGCATCCCAATTCTTGTCGTGCAACAACTTAA

Coding sequence (CDS)

ATGGTTTCATGTGCTACCTTGTGTGAAGATATCATGATTTCTGTAATTTCAGCGTCTCCATTCACTTTCTCCATTTCCAAATCCACGAAGCTCTGTTCGTGTTCGAGGTCTAGGGTTTGGCCCTCTTCTTCACTCAGTCTCCGCTCGCGTAACCGAAATTCGAATCTGTTTAGCTCCGCTTCTATGAGTGAATCCGCTGGAAGTAATTCCGCTCCTCCACCGGACGACGGCGTGGAGAAGACAGCCGATGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATCTGATCGATTCGTGGCCTCTTGGAAGCGTCGTAACTCAGGGATGCCATGCTTCAGTGTCCGCTATTTGGTTGAACAAAGACGATCCTCACACTTCCGAGTACTGTAGTCCACACAATATCGATTCTATGCACAAGGTTACTCTTGAGGTGAAGGGAGAAACTCAGATTGTCAACTTGTCGGAGAAACTAAAAGCAAGTTCAATCGCCCACAAACTATGGATAGAACAACCAGAGCATCCCAATTCTTGTCGTGCAACAACTTAA

Protein sequence

MVSCATLCEDIMISVISASPFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSASMSESAGSNSAPPPDDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRATT

Homology

[Close]

BLAST of Carg08309 vs. NCBI nr
Match: XP_023546189.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 174/180 (96.67%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MVSCATLCEDIMISVISASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVSCATLCEDIMISVISASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVSCATLCEDIMISVISASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXDDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNK 120
           XXXXXXXXXXXXXXDDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSA+WLNK
Sbjct: 61  XXXXXXXXXXXXXXDDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAVWLNK 120

Query: 121 DDPHTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 180
           DDPHTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPE+  +C AT
Sbjct: 121 DDPHTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPENIPTCLAT 180

[Close]

BLAST of Carg08309 vs. NCBI nr
Match: XP_022962062.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 75  DDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNI 134
           DD VEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSA+WLNKDDPHT EYCSPHNI
Sbjct: 64  DDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNI 123

Query: 135 DSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           DSMHKVTLEVKGETQIVNLSEKL+A+SIAHKLWIEQPE+  +C AT
Sbjct: 124 DSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT 169

[Close]

BLAST of Carg08309 vs. NCBI nr
Match: XP_022996792.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 2.8e-47
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 75  DDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNI 134
           DD VEK ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDP TSEYCSPHNI
Sbjct: 64  DDIVEKAADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPQTSEYCSPHNI 123

Query: 135 DSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           DSMHKVTLEVKGETQIVNLSEKLK +SIAHKLWIEQPE+  +C AT
Sbjct: 124 DSMHKVTLEVKGETQIVNLSEKLKENSIAHKLWIEQPENIPTCLAT 169

[Close]

BLAST of Carg08309 vs. NCBI nr
Match: XP_022951520.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 75  DDG---VEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP 134
           DDG    E+ ADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP
Sbjct: 62  DDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP 121

Query: 135 HNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
            NIDSMHKVTLEVKGETQIVNLSEKLKA+SI HKLW+EQPE+  +C A+
Sbjct: 122 QNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLAS 170

[Close]

BLAST of Carg08309 vs. NCBI nr
Match: XP_022951521.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 75  DDG---VEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP 134
           DDG    E+ ADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP
Sbjct: 62  DDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSP 121

Query: 135 HNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
            NIDSMHKVTLEVKGETQIVNLSEKLKA+SI HKLW+EQPE+  +C A+
Sbjct: 122 QNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLAS 170

[Close]

BLAST of Carg08309 vs. TAIR10
Match: AT5G10700.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein)

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-41
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 79  EKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDSMH 138
           EK  DV++QYVVLRRDLIDSWPLGSVVTQGCHASV+AIW  KDDP T +YC P +IDSMH
Sbjct: 65  EKPDDVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSMH 124

Query: 139 KVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           KVTLEVKGETQ++NLSEKLK   I+HKLW+EQPE+  +C AT
Sbjct: 125 KVTLEVKGETQMMNLSEKLKLGGISHKLWMEQPENIPTCIAT 166

[Close]

BLAST of Carg08309 vs. Swiss-Prot
Match: sp|Q3SZ85|PTRD1_BOVIN (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus OX=9913 GN=PTRHD1 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 84  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDSMHKV 143
           +L+QY+VLR+DL     SWP G+VV Q CHA+ +A+ L++D PHT+ Y     ++ M KV
Sbjct: 24  ILVQYLVLRKDLTQPPFSWPAGAVVAQACHAATAALHLHRDHPHTAAYL--RELERMRKV 83

Query: 144 TLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRA 180
            LE   ET +  L+E L+  +I HKLW+EQPE+  +C A
Sbjct: 84  VLEAPDETTLKLLAETLQQKNIDHKLWMEQPENIPTCIA 120

[Close]

BLAST of Carg08309 vs. Swiss-Prot
Match: sp|D3Z4S3|PTRD1_MOUSE (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus OX=10090 GN=Ptrhd1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 77  GVEKTADVLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHN 136
           GVE    +L+QY+VLR+DL     SWP G++V Q CHA+ +A+ L++D PHT+ Y     
Sbjct: 19  GVE--PQILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RE 78

Query: 137 IDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRA 180
           +  M KV LE   ET +  L+E L+  +I H LW+EQPE+  +C A
Sbjct: 79  LGRMRKVVLEAADETTLKELAETLQQKNIDHTLWLEQPENIATCIA 120

[Close]

BLAST of Carg08309 vs. Swiss-Prot
Match: sp|Q6GMV3|PTRD1_HUMAN (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens OX=9606 GN=PTRHD1 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.8e-17
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 84  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDSMHKV 143
           VL+QY+VLR+DL     SWP G++V Q CHA+ +A+  ++D PHT+ Y     +  M KV
Sbjct: 24  VLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYL--QELGRMRKV 83

Query: 144 TLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRA 180
            LE   ET +  L+E L+  +I H LW+EQPE+  +C A
Sbjct: 84  VLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA 120

[Close]

BLAST of Carg08309 vs. TrEMBL
Match: tr|A0A0A0LLQ2|A0A0A0LLQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377990 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 79  EKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDSMH 138
           E  ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTS+YC+PHNIDSMH
Sbjct: 72  ETPADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSDYCNPHNIDSMH 131

Query: 139 KVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           KVTLEVKGETQ+VNLSEKLKA+SI HKLWIEQPE+  +C AT
Sbjct: 132 KVTLEVKGETQMVNLSEKLKANSIVHKLWIEQPENIPTCLAT 173

[Close]

BLAST of Carg08309 vs. TrEMBL
Match: tr|A0A1S4DVS0|A0A1S4DVS0_CUCME (putative peptidyl-tRNA hydrolase PTRHD1 OS=Cucumis melo OX=3656 GN=LOC103488228 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 75  DDGV--EKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPH 134
           D GV  E+T DVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL KDDPHTS+YC+P 
Sbjct: 66  DAGVQAEETPDVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLTKDDPHTSDYCNPD 125

Query: 135 NIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           NIDSMHKVTLEVKGETQ+VNLSEKLKA+SI HKLWIEQPE+  +C AT
Sbjct: 126 NIDSMHKVTLEVKGETQMVNLSEKLKANSIVHKLWIEQPENIPTCLAT 173

[Close]

BLAST of Carg08309 vs. TrEMBL
Match: tr|A0A2P5G1E0|A0A2P5G1E0_9ROSA (Peptidyl-tRNA hydrolase, PTH OS=Trema orientalis OX=63057 GN=TorRG33x02_001460 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 85/107 (79.44%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 75  DDGVE-KTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHN 134
           DD VE +++D L+QYVVLRRDLID+WPLGSVVTQGCHASVSAIW NKDDPHT +YCSP N
Sbjct: 72  DDAVEAQSSDALVQYVVLRRDLIDTWPLGSVVTQGCHASVSAIWSNKDDPHTLQYCSPEN 131

Query: 135 IDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           IDSMHKVTLEVKGETQI+NLS KL A  IAHKLWIEQPE+  +C AT
Sbjct: 132 IDSMHKVTLEVKGETQILNLSAKLTAGGIAHKLWIEQPENFPTCLAT 178

[Close]

BLAST of Carg08309 vs. TrEMBL
Match: tr|A0A1R3IU65|A0A1R3IU65_COCAP (Peptidyl-tRNA hydrolase, PTH2 OS=Corchorus capsularis OX=210143 GN=CCACVL1_09780 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.4e-41
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 77  GVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDS 136
           G E   DVL+QYVVLRRDLID+WPLGSVVTQGCHASVSAIW +KDDPHT +YCSP NIDS
Sbjct: 60  GAENKDDVLVQYVVLRRDLIDTWPLGSVVTQGCHASVSAIWAHKDDPHTLQYCSPQNIDS 119

Query: 137 MHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           MHKVTLEVKGETQI NLSEKL A  IAHKLWIEQPE+  +C AT
Sbjct: 120 MHKVTLEVKGETQIKNLSEKLTAGGIAHKLWIEQPENFPTCLAT 163

[Close]

BLAST of Carg08309 vs. TrEMBL
Match: tr|A0A1R3J6Y8|A0A1R3J6Y8_9ROSI (Peptidyl-tRNA hydrolase, PTH2 OS=Corchorus olitorius OX=93759 GN=COLO4_19024 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.8e-41
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 77  GVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPHNIDS 136
           G E   DVL+QYVVLRRDLID+WPLGSVVTQGCHASVSA+W +KDDPHT +YCSP NIDS
Sbjct: 60  GAENKDDVLVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSHKDDPHTLQYCSPENIDS 119

Query: 137 MHKVTLEVKGETQIVNLSEKLKASSIAHKLWIEQPEHPNSCRAT 181
           MHKVTLEVKGETQI NLSEKL A  IAHKLWIEQPE+  +C AT
Sbjct: 120 MHKVTLEVKGETQIKNLSEKLTAGGIAHKLWIEQPENFPTCLAT 163

The following BLAST results are available for this feature:

BLAST of Carg08309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546189.1	1.6e-55	96.67	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]	[more]
XP_022962062.1	1.1e-48	90.57	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]	[more]
XP_022996792.1	2.8e-47	90.57	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima]	[more]
XP_022951520.1	2.6e-45	84.40	putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita moschata]	[more]
XP_022951521.1	2.6e-45	84.40	putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg08309 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10700.1	8.1e-41	75.49	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]

BLAST of Carg08309 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3SZ85\|PTRD1_BOVIN	2.4e-18	46.46	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus OX=9913 GN=PTRHD1 PE=2 SV=...	[more]
sp\|D3Z4S3\|PTRD1_MOUSE	1.6e-17	44.34	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus OX=10090 GN=Ptrhd1 PE=1 ...	[more]
sp\|Q6GMV3\|PTRD1_HUMAN	7.8e-17	44.44	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens OX=9606 GN=PTRHD1 PE=1 S...	[more]

BLAST of Carg08309 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLQ2\|A0A0A0LLQ2_CUCSA	3.0e-45	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377990 PE=4 SV=1	[more]
tr\|A0A1S4DVS0\|A0A1S4DVS0_CUCME	5.6e-44	84.26	putative peptidyl-tRNA hydrolase PTRHD1 OS=Cucumis melo OX=3656 GN=LOC103488228 ...	[more]
tr\|A0A2P5G1E0\|A0A2P5G1E0_9ROSA	2.6e-41	79.44	Peptidyl-tRNA hydrolase, PTH OS=Trema orientalis OX=63057 GN=TorRG33x02_001460 P...	[more]
tr\|A0A1R3IU65\|A0A1R3IU65_COCAP	3.4e-41	80.77	Peptidyl-tRNA hydrolase, PTH2 OS=Corchorus capsularis OX=210143 GN=CCACVL1_09780...	[more]
tr\|A0A1R3J6Y8\|A0A1R3J6Y8_9ROSI	5.8e-41	79.81	Peptidyl-tRNA hydrolase, PTH2 OS=Corchorus olitorius OX=93759 GN=COLO4_19024 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004045	aminoacyl-tRNA hydrolase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023476	Pep_tRNA_hydro_II_dom_sf
IPR002833	PTH2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08309-RA	Carg08309-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002833	Peptidyl-tRNA hydrolase, PTH2	PFAM	PF01981	PTH2	coord: 87..169 e-value: 3.5E-14 score: 53.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78
None	No IPR available	PANTHER	PTHR11717:SF2	PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED	coord: 81..176
None	No IPR available	PANTHER	PTHR11717	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	coord: 81..176
IPR023476	Peptidyl-tRNA hydrolase II domain superfamily	SUPERFAMILY	SSF102462	Peptidyl-tRNA hydrolase II	coord: 86..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08309	Cla022255	Watermelon (97103) v1	carwmB0058
Carg08309	Csa2G377990	Cucumber (Chinese Long) v2	carcuB0059
Carg08309	MELO3C011186	Melon (DHL92) v3.5.1	carmeB0058
Carg08309	ClCG08G012660	Watermelon (Charleston Gray)	carwcgB0063
Carg08309	CSPI02G22730	Wild cucumber (PI 183967)	carcpiB0063
Carg08309	Cucsa.161740	Cucumber (Gy14) v1	carcgyB0066
Carg08309	CmaCh05G006250	Cucurbita maxima (Rimu)	carcmaB0083
Carg08309	CmaCh12G002960	Cucurbita maxima (Rimu)	carcmaB0079
Carg08309	CmoCh12G002470	Cucurbita moschata (Rifu)	carcmoB0078
Carg08309	CmoCh05G006520	Cucurbita moschata (Rifu)	carcmoB0087
Carg08309	Lsi08G011220	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08309	Cp4.1LG07g01980	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08309	CsGy2G022460	Cucumber (Gy14) v2	carcgybB0060
Carg08309	MELO3C011186.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08309	CsaV3_2G031370	Cucumber (Chinese Long) v3	carcucB0065
Carg08309	Cla97C08G155890	Watermelon (97103) v2	carwmbB0061
Carg08309	Bhi04G000875	Wax gourd	carwgoB0069

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08309	Carg03886	Silver-seed gourd	carcarB072

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08309	Cucurbita maxima (Rimu)	carcmaB0072
Carg08309	Cucurbita maxima (Rimu)	carcmaB0074
Carg08309	Cucurbita maxima (Rimu)	carcmaB0081
Carg08309	Cucurbita moschata (Rifu)	carcmoB0076
Carg08309	Cucurbita moschata (Rifu)	carcmoB0083
Carg08309	Cucurbita moschata (Rifu)	carcmoB0085
Carg08309	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08309	Cucurbita pepo (Zucchini)	carcpeB0082
Carg08309	Cucurbita pepo (Zucchini)	carcpeB0086
Carg08309	Cucurbita pepo (Zucchini)	carcpeB0092
Carg08309	Wild cucumber (PI 183967)	carcpiB0066
Carg08309	Cucumber (Chinese Long) v2	carcuB0062
Carg08309	Cucumber (Chinese Long) v3	carcucB0068
Carg08309	Bottle gourd (USVL1VR-Ls)	carlsiB055
Carg08309	Melon (DHL92) v3.5.1	carmeB0059
Carg08309	Melon (DHL92) v3.6.1	carmedB0060
Carg08309	Wax gourd	carwgoB0073
Carg08309	Silver-seed gourd	carcarB065
Carg08309	Silver-seed gourd	carcarB067
Carg08309	Silver-seed gourd	carcarB071
Carg08309	Cucumber (Gy14) v1	carcgyB0068