Carg08116 (gene) Silver-seed gourd

NameCarg08116
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_050 : 805351 .. 807162 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTAAGTTGAATTAAGAAGACTGCTTAGAGATAAGCCTCCCCGGATTCGCAGCGAACAAACAAAACCCTCTCTCTCGGTAATCTCAACTCTTCTTTCTTGATTGTATATATAAATCCGACCAACGCTGTCTTCTCCATCAACACTTTCTCCTTCATTCGTTTCTCATTCTGTGAATCCGGCCGCTTTTGTCATCGTCTTCGTCGTCCGGCGGAGAAGGTCATTGTCTGGTTTGGTTGTGTTCGTCGGGGGATTCATCGTCTGTGGTTGATTTCAAGAGGAAGAAGGGATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTATTTCGTCGTTTCTATTGTGTTTTTTTTGGTGTTCTGGTGGTTTGGAGTTTTGGAGTTGAAACAAGGGGGTTTGTGGTGTGCGATTGTAGATCTGGATGTTCGTTTGTGTTGATTTAGGGTTTTGGTGGTGGTTTTTCAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTTCTCTATCTTTTTGTTCATGGCGGCTGAACTCGGATCTGATCTGAATCGGATTCCGATGATTTGGTATCGGAAACTGAGTTTCATCGGTAAAGAGTTTAGCCTCCTTTTCATCGGAGACGTTTTTCTTGGAATTATCGCCCCGGTGAAATCCCCAAATTAACCCCCAATTAGCCTCCAAATTACAGTCATTCAAACTTTTCAAATCTCATCGTTCACCCTCTTAAATCCATTAACATTTTCCATTGACCTTTCAATGATTACAAAAATTCTCAAACTACGCTAGAAATTTGGTACAATTCAATCCTTCATATTAGATTGTTATAACTAATTTTGTGTCTAATATGAACTCTGCAGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAAACAGAAACATCCATTTACTATTATGCTGTGCTTCAAAGTCTTAAGAAGATCGATCTCTCAGTAAACTTTTCTCTGAATGCAAAGGAAAAAAGAAAAAAAATGGAAAAACAATCGAGTTGATGATTTAATTACTTGCGTTTTATTATAATATTTTAGTTTAGTGCTTGTTCTTCGTTTCCTCCTCTTCACCTCTCTACATTTTTCATAATAAATAACACCATCTCTCCCCAATTATCTGTTTTCTCTTTCGCTCTCTCTCTTGGTTTCCTATGATCGATGGGTTTCTTTTTGGATCATCTGTGTTCTTGAGATACGATTCCAAATTTTACAGTTCATGATATTGGACTAACTCCATTGATATGATATACCTTGTTATGTTAGTGAAGTTTTTGGGTTTTCTTGTGAATCGCATCGTTTCGATTGGACTATACCCTTGAAAAAATTAGACCTTCAAACCAGATTGCCTTTCAGAGATGTGGTGGCCAGCGAAGCAGAAGATATATGGTGAGTAGCGCAGTGGGTGCTCCTGCCCCGTCCTTGTCCCGCCCACCCACGGCATGTTGGTGTCGCATGCGGGCGCCATCGCATCATAACACCACGATTCTTCATGATGCCTTCAACGCTCCCCAACGTTTTAAATGATTATATTTGATGGCCCCGATCTTTTTAGAAAAATTGCTAATAATTCATAACAAAATATATATATATATA

mRNA sequence

AAATTAAGTTGAATTAAGAAGACTGCTTAGAGATAAGCCTCCCCGGATTCGCAGCGAACAAACAAAACCCTCTCTCTCGGTAATCTCAACTCTTCTTTCTTGATTGTATATATAAATCCGACCAACGCTGTCTTCTCCATCAACACTTTCTCCTTCATTCGTTTCTCATTCTGTGAATCCGGCCGCTTTTGTCATCGTCTTCGTCGTCCGGCGGAGAAGGTCATTGTCTGGTTTGGTTGTGTTCGTCGGGGGATTCATCGTCTGTGGTTGATTTCAAGAGGAAGAAGGGATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAAACAGAAACATCCATTTACTATTATGCTGTGCTTCAAAGTCTTAAGAAGATCGATCTCTCAGTAAACTTTTCTCTGAATGCAAAGGAAAAAAGAAAAAAAATGGAAAAACAATCGAGTTGATGATTTAATTACTTGCGTTTTATTATAATATTTTAGTTTAGTGCTTGTTCTTCGTTTCCTCCTCTTCACCTCTCTACATTTTTCATAATAAATAACACCATCTCTCCCCAATTATCTGTTTTCTCTTTCGCTCTCTCTCTTGGTTTCCTATGATCGATGGGTTTCTTTTTGGATCATCTGTGTTCTTGAGATACGATTCCAAATTTTACAGTTCATGATATTGGACTAACTCCATTGATATGATATACCTTGTTATGTTAGTGAAGTTTTTGGGTTTTCTTGTGAATCGCATCGTTTCGATTGGACTATACCCTTGAAAAAATTAGACCTTCAAACCAGATTGCCTTTCAGAGATGTGGTGGCCAGCGAAGCAGAAGATATATGGTGAGTAGCGCAGTGGGTGCTCCTGCCCCGTCCTTGTCCCGCCCACCCACGGCATGTTGGTGTCGCATGCGGGCGCCATCGCATCATAACACCACGATTCTTCATGATGCCTTCAACGCTCCCCAACGTTTTAAATGATTATATTTGATGGCCCCGATCTTTTTAGAAAAATTGCTAATAATTCATAACAAAATATATATATATATA

Coding sequence (CDS)

ATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAA

Protein sequence

MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08116-RACarg08116-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..86
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATEDcoord: 1..86

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08116CmaCh04G004420Cucurbita maxima (Rimu)carcmaB0529
Carg08116CmoCh04G004720Cucurbita moschata (Rifu)carcmoB0514
Carg08116Cp4.1LG01g02680Cucurbita pepo (Zucchini)carcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg08116Cucurbita pepo (Zucchini)carcpeB0523
Carg08116Cucurbita pepo (Zucchini)carcpeB0526
Carg08116Cucurbita pepo (Zucchini)carcpeB0529
Carg08116Wild cucumber (PI 183967)carcpiB0407
Carg08116Cucumber (Chinese Long) v2carcuB0402
Carg08116Cucumber (Chinese Long) v2carcuB0407
Carg08116Cucumber (Chinese Long) v2carcuB0409
Carg08116Cucumber (Chinese Long) v2carcuB0410
Carg08116Cucumber (Chinese Long) v3carcucB0406
Carg08116Cucumber (Chinese Long) v3carcucB0410
Carg08116Bottle gourd (USVL1VR-Ls)carlsiB340
Carg08116Bottle gourd (USVL1VR-Ls)carlsiB341
Carg08116Bottle gourd (USVL1VR-Ls)carlsiB342
Carg08116Melon (DHL92) v3.5.1carmeB0383
Carg08116Melon (DHL92) v3.5.1carmeB0386
Carg08116Melon (DHL92) v3.6.1carmedB0387
Carg08116Melon (DHL92) v3.6.1carmedB0390
Carg08116Watermelon (Charleston Gray)carwcgB0365
Carg08116Watermelon (Charleston Gray)carwcgB0368
Carg08116Watermelon (97103) v1carwmB0366
Carg08116Watermelon (97103) v1carwmB0375
Carg08116Watermelon (97103) v2carwmbB0391
Carg08116Watermelon (97103) v2carwmbB0394
Carg08116Watermelon (97103) v2carwmbB0399
Carg08116Wax gourdcarwgoB0456
Carg08116Wax gourdcarwgoB0466
Carg08116Silver-seed gourdcarcarB217
Carg08116Silver-seed gourdcarcarB324
Carg08116Silver-seed gourdcarcarB401
Carg08116Silver-seed gourdcarcarB402
Carg08116Silver-seed gourdcarcarB404
Carg08116Cucumber (Gy14) v2carcgybB0383
Carg08116Cucumber (Gy14) v2carcgybB0388
Carg08116Cucumber (Gy14) v2carcgybB0389
Carg08116Cucumber (Gy14) v1carcgyB0433
Carg08116Cucumber (Gy14) v1carcgyB0439
Carg08116Cucurbita maxima (Rimu)carcmaB0528
Carg08116Cucurbita maxima (Rimu)carcmaB0525
Carg08116Cucurbita maxima (Rimu)carcmaB0526
Carg08116Cucurbita moschata (Rifu)carcmoB0508
Carg08116Cucurbita moschata (Rifu)carcmoB0509
Carg08116Cucurbita moschata (Rifu)carcmoB0516