Carg08049 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08049
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Polyadenylate-binding 2
Location	Cucurbita_argyrosperma_scaffold_050 : 405784 .. 410471 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAAATCCAGAGTTACAGACAGGATCCGAAACCTAATCTTCAGCCATTCATAAGTAGACAATATACACAGGGATCGAGTGGCCACCGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGTAGCTTCTCGAGTTCTTCTCTGTTTTTTCCGAGCCTTTTTCATGGAGTTTCGTCTCTGATTCACTGTATTTTCTAACTGTTCAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGGTATCTTCCTTTTTTATCTCTGTACTTCAGTAAGTTAGTTCTTGATTTCTTTTATTGATCTTGGCTTGGTTTAAGGCTTAATTTTTACCGATTTTTAATGGCGGTGGGAGGATTTAAGTTGCCTGGATGAGCCTAGTCTTAACATTGATCACATGTTTGCACATTGAAGAGAGTGAATTTAAGTTGCAAACTGTGAATCAAGTTCATGAAGTTCCAAGATCTGTTAGGGCTAAACCTTATTGAAGTCATTTAGTGGGTAAGTAGGAGAGTTTTGTGACAACACAAGGTTGTCGGATCGTATAAATAGAAGGCTTCTTAAATAGGTTGAGAGCCCTTGTGGGAAGTATGGTCTAGATGAGGTTAAATGCCTAACTTACCAAAGAGTTTTATACTAAACTAACCGAAGAGTTTTATAAACGTCGTCACTTTTTATAAACAGTCGAAGTCCCGTTAGTTTTCGACAAACATCTTCAAAGTTCGGTTTCTCGGGAAGAGAAAAGAAAAGATCGTTAGATCTAGGAAATTTTGAAGTTCTTGAAGTGTTATTTAGCATTGTTATGTCCAATGGGTGCATAGCATTCTTCGATTTTTCTTTGTAGTCTCGAGTTTTTTTGTCGTTTATTTTATAAATCAACCAGCAAGTTTTCAAGACTTTCTGTATTTTGATGGTATTTGACAAATTTCTTATAACGTTCGTCTTTCATCCGGGTGGAACTAAAGTTAAGTTGTCTCTCTTTTCTTATTTATGCTATTTGAGTCTGGAACTTCTTTTTTTCACAATTATGTTGCTTTAATTGTCATATTTGGGCAATAATTTTCACTTTATTAACAAAACAAATTGATTGTTTTAATGTCCTCTTATTTCCTATGCTGTCAAAACGATACGAACTTTTAGCAAGATGAATGTGTTCTATGTGGCATGTGCATGTCTGCTCATTAGATACTCTATAGGATTGTTCTCAGATTATTACTACTTTTCTTGTTATCATTTATCTTCTTTTTGGTGGTTGGAAGTATATTAATCAGTGGAAGTTTTATCTCATACTTTGGTTAACAATCTTTTTAGGGTTTTTCATTTGTTTGTAACTAACTCGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTGAGATTTATCACCCTTTTCATTCACTATGTCATTTTAACATTGAAGTTTTTTCCGTACACATTTATAGTATTACATCTTTAGCATTGGTCACCTTTTCGTTTCTCTTTAGTCATCTAACAACCATGGATTGGTCTTTACTGTTTATATTCGAATTATCTCAAGTACCGGAATAAAAATATTGAAAAACTTTTTTTTTTTTTTAAATCTTTTACTTTGAGTGACATTCTTTCATTAAAGAGTAATTTCAGACAAGAAATGTAAAAGATAAAACAATTATCATTAGGGAATACTGCGCCACGAATTATATTATTTTAAACTTGAAAAAATTAACTCGTATTTTTTTCAGTTTTTCTTTGTGGAAAATTGTTAAGCTGTTGCCACAACTAATAAAACAGAAAGTGCACGTCGAGAAGACCCATGGAACTTAGCTAAATCTAGTACCTGTTCCCGGCCATGCTCTTCCCATTGAAAAGGATTTCTTTATAGCTGTAGCCCCCAATCATGTCTTTGCTGTGTGGATCCATAAGGTTTTAGCGTTTTCGTAAAGTCGATGCCCATGTGAACAACTAGTTTATATTATATTCGGGCTAGCTGCGTCAGCAAGTTCTTCATAGAGTTGGAATGAAGGAAAGATCAAATTCCGCAAATGTTTGGTATCAGAGTGTGAGAATAAATGGTCTCGGTCCTGCTCTGCTTTCATACAGAGCAAACAACAGCTAGGATTTTATTAGGACATCTCTTTTGCAATCTATTCCCTCTGTTGACGCTCTCTCGGGAAAGGGACCTAAGAATTGCTATTGCTCCTTCCTTGACTGCCTTGCTTTTATCTAGTAATGAAGTTCCAAAAAACTTATTAATTTCTAACTTATCCTGGTTTCTTCTTGTTACTACCCTTCTTGAATTGGTGCTGCTGTCATTCCGAGCTTCTTGCACTTGCTAGTTCTTTTCCCTGTATAACCTCTTATAATCTCGAAAGCCTTAAACAATAATGTTGATTTTCCCCTCACGTATCCTGCCAAAAGGAGAGCCAATGCGCCCACCGAAGGCTACACACACTTCGAATCTTCCTTTCTTCTAAACCCCCATTCCTTCATTTTTCATATATGCTTGCCACGACCACCACCTTATCCCATAGGGCGCTAGACTCTTTCGGAAATCTCAATAACCTCTTATCCATAGTGCCCATATGCTGATGCTTAGCCCAACCTTTTAATGTTGCAATTATTGACCATAAAGACGTAAACCCAATCAGTATAGGGGAAAGAATTCATCGGCATGATCAATCTCAAGAAGTGATCAAAATTTTGGACCTTCGTAGAATGTTACCTTTCTGATTGTATGTTCAATTTATGTGAAGTTTATATTGAATATATGTCAAGTCATTATCATCTGTTACGAGGAATTATATTTTATCAATATTTCTAATATTTGGGTCTAAAGATATCTTTCCTTTAACTTGCTCCTAATCTTAAAAGTCTTGATGGATGGCGGATTGAAGTGTTATTTCTCCTTGGGCATACTTTTCTTTTTTGCCTCTCTCCCTATTTCACAAGGCTTTCCAATGTCATATTTCAATACAAGATTTATTTTTTTGTGTTGTGGTTTTTACTTCAGGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTATTTTAAACTTCAGTTTATGTAAGAACTTTATGTTAATAATCTATTTCACCCATACGCCCCTAATAGCGAATGTATATCGGAGCGGAGAACGACGTTGTCAATTTTTGAACTTCACCAGGCTTGTACGCTCATCTTAGATAAATTATAGAGTTTTACTACTGACCATAGTCGATTTTTGGTACATTTTGCAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGGTAAGTGCTGAAATACTATATTTCTTTTCACAAGATGTGTGGATGGTTCATTTTCATTTTCAGACACAAACATTAAGTGTACTCCTTCAGAATTATCAACTTCCTATGTATATTGTTGAAAAAGGGAATAATCAACTTCCTTCTACTTTCAGCTTTATAATGCAAGTTTCTATCTTCCTACTTTATGCAGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAATGATTGTTCGGGTTCAGCAGTTCATTCGTCAAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTGTACTCTATTCATGTTTTAAAATCCGACTCAAAGAGTTTCTTTTTATGAACTTGGTACCAGTTTTAGCTTGTGGGGTTTAAGATTTGTGGTTTGCTTCTTTATGTTGGCTCTGGAAGAGCTAAAAACCCATTAGAGAATTTTAAGGAAAGAAAATTAAGGAAACTGAAGGACACAGCCTTTTGTATGGTGAATTGGAACTGATCATGACGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGACCTCCCCCCCTTTTTTGCCCTTTCCAATTTGATTATATTTGTATATGTTAGATCTCTCTTTAATTTTCAATTTTAAAGCTCTCTTCGATAATAGCTCGCCCTTGGCTTATTGAAGAAGAAGAGACGTGGTAAGAGAAGAGACGTGGTAAGAGATTATGTGAAGGACCCTAAAGTCCCAAGCTGATAAGCTCTTGGATAATCTCGGTCCTCTAACCGATTGGTCGTAGGTTCGAATCCTACAATAAGTATTTGTTGGACCTCCATTTCTCGAGAGGGAGCCAGGCTGTATTTCCCCAACGGCTGACTAGTGGTAGTAGAAAAACA

mRNA sequence

TATGAAATCCAGAGTTACAGACAGGATCCGAAACCTAATCTTCAGCCATTCATAAGTAGACAATATACACAGGGATCGAGTGGCCACCGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAATGATTGTTCGGGTTCAGCAGTTCATTCGTCAAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTGTACTCTATTCATGTTTTAAAATCCGACTCAAAGAGTTTCTTTTTATGAACTTGGTACCAGTTTTAGCTTGTGGGGTTTAAGATTTGTGGTTTGCTTCTTTATGTTGGCTCTGGAAGAGCTAAAAACCCATTAGAGAATTTTAAGGAAAGAAAATTAAGGAAACTGAAGGACACAGCCTTTTGTATGGTGAATTGGAACTGATCATGACGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGACCTCCCCCCCTTTTTTGCCCTTTCCAATTTGATTATATTTGTATATGTTAGATCTCTCTTTAATTTTCAATTTTAAAGCTCTCTTCGATAATAGCTCGCCCTTGGCTTATTGAAGAAGAAGAGACGTGGTAAGAGAAGAGACGTGGTAAGAGATTATGTGAAGGACCCTAAAGTCCCAAGCTGATAAGCTCTTGGATAATCTCGGTCCTCTAACCGATTGGTCGTAGGTTCGAATCCTACAATAAGTATTTGTTGGACCTCCATTTCTCGAGAGGGAGCCAGGCTGTATTTCCCCAACGGCTGACTAGTGGTAGTAGAAAAACA

Coding sequence (CDS)

ATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAG

Protein sequence

MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY

Homology

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BLAST of Carg08049 vs. NCBI nr
Match: XP_023516160.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.6 bits (1124), Expect = 2.7e-119
Identity = 233/234 (99.57%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234

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BLAST of Carg08049 vs. NCBI nr
Match: XP_022941798.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 433.3 bits (1113), Expect = 5.1e-118
Identity = 223/234 (95.30%), Postives = 224/234 (95.73%), Query Frame = 0


Query: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNF          VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNF--NYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 232

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BLAST of Carg08049 vs. NCBI nr
Match: XP_022989860.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 432.6 bits (1111), Expect = 8.7e-118
Identity = 233/236 (98.73%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MEHNF--XXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLED 60
           MEHNF  XXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLED
Sbjct: 1   MEHNFXXXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120
           MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC
Sbjct: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120

Query: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180
           TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180

Query: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 236

[Close]

BLAST of Carg08049 vs. NCBI nr
Match: XP_023516168.1 (polyadenylate-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.4 bits (1108), Expect = 1.9e-117
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233

[Close]

BLAST of Carg08049 vs. NCBI nr
Match: XP_022941799.1 (polyadenylate-binding protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 427.2 bits (1097), Expect = 3.7e-116
Identity = 222/234 (94.87%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNF          VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNF--NYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 231

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BLAST of Carg08049 vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-73
Identity = 157/260 (60.38%), Postives = 181/260 (69.62%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDAD----LDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAG 75
           VYGG+IP++ E + D               G ++ EP  S+S+DLEDMK+R+KEIEEEAG
Sbjct: 11  VYGGEIPEEEEGEMDXXXXXXXXXXXXXXAGDEELEP-GSSSRDLEDMKKRIKEIEEEAG 70

Query: 76  ALREMQAKVEKEMGAVQ------------------------------------EDSSSTS 135
           ALREMQAK EK+MGA Q                                    ++  ++ 
Sbjct: 71  ALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKEIINSG 130

Query: 136 ATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFV 195
            + AEKEEVD+RS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFV
Sbjct: 131 VSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 190

Query: 196 EVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPNPYGFRGRRPFMADAPFY 235
           EV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR  R FM   PFY
Sbjct: 191 EVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGFMPGVPFY 250

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BLAST of Carg08049 vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-72
Identity = 155/223 (69.51%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGA 75
           VYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+EEEA A
Sbjct: 8   VYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEMEEEAAA 67

Query: 76  LREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGT 135
           LREMQAKVEKEMGA Q D +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HFQ+CGT
Sbjct: 68  LREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGT 127

Query: 136 VNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYR 195
           VNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGMKQY 
Sbjct: 128 VNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 187

Query: 196 GRRPNP-YGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
             R NP  G+R RRPF+    FY  YGYG+ PRFRRPMRY PY
Sbjct: 188 PGRFNPSMGYRFRRPFVPPY-FYSPYGYGKAPRFRRPMRYMPY 216

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BLAST of Carg08049 vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 238.8 bits (608), Expect = 3.4e-63
Identity = 139/220 (63.18%), Postives = 155/220 (70.45%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALRE 75
           VYGG+IPD  EMD D++     A                                    E
Sbjct: 8   VYGGEIPDVGEMDGDME-----ALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 67

Query: 76  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNR 135
           MQAKVEKEMGA  +D +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 68  MQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 127

Query: 136 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 195
           VTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+RGRR
Sbjct: 128 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 187

Query: 196 PNPY-GFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
            NPY G+R RRPFM+   + P YGYG+ PRFRRPMRY PY
Sbjct: 188 FNPYMGYRFRRPFMSPYMYSP-YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Carg08049 vs. TAIR10
Match: AT2G16940.2 (Splicing factor, CC1-like)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 106 ARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALL 165
           AR +YVGN+    + +++++ F+S G+V  V +  D+ G  KGF +V+F  ++  +NAL 
Sbjct: 333 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN 392

Query: 166 LN-ESELHGRQLKVSA--KRTNVP 187
           LN + E+ GR +KVSA   +T VP
Sbjct: 393 LNGQLEIAGRAIKVSAVTDQTEVP 416

[Close]

BLAST of Carg08049 vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09
Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 82  KEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 141
           KE     +    T +T    E+  +R+++V NV +  T + + +HF   G V +  I+TD
Sbjct: 455 KEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTD 514

Query: 142 -KFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 179
              G P G AY+EF   +A +NAL L+ +    R LK+
Sbjct: 515 PATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI 552

[Close]

BLAST of Carg08049 vs. Swiss-Prot
Match: sp|Q93VI4|PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-76
Identity = 159/224 (70.98%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 16  VYGGDIPDDAEMD----ADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAG 75
           VYGG+IP++ E +                 G ++ EP  S+S+DLEDMK+R+KEIEEEAG
Sbjct: 11  VYGGEIPEEEEGEMXXXXXXXXXXXXXXXXGDEELEP-GSSSRDLEDMKKRIKEIEEEAG 70

Query: 76  ALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCG 135
           ALREMQAK EK+MGA Q+ S   SA  AEKEEVD+RS+YVGNVDYACTPEEVQQHFQSCG
Sbjct: 71  ALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 130

Query: 136 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 195
           TVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+
Sbjct: 131 TVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQF 190

Query: 196 RGR-RPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           RGR RP    FR  R FM   PFYP Y YGRVPRFRRPMRYRPY
Sbjct: 191 RGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Carg08049 vs. Swiss-Prot
Match: sp|Q9LX90|PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.5e-71
Identity = 155/223 (69.51%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGA 75
           VYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+EEEA A
Sbjct: 8   VYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEMEEEAAA 67

Query: 76  LREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGT 135
           LREMQAKVEKEMGA Q D +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HFQ+CGT
Sbjct: 68  LREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGT 127

Query: 136 VNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYR 195
           VNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGMKQY 
Sbjct: 128 VNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 187

Query: 196 GRRPNP-YGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
             R NP  G+R RRPF+    FY  YGYG+ PRFRRPMRY PY
Sbjct: 188 PGRFNPSMGYRFRRPFVPPY-FYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Carg08049 vs. Swiss-Prot
Match: sp|Q9FJN9|PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-62
Identity = 139/220 (63.18%), Postives = 155/220 (70.45%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALRE 75
           VYGG+IPD  EMD D++     A                                    E
Sbjct: 8   VYGGEIPDVGEMDGDME-----ALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 67

Query: 76  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNR 135
           MQAKVEKEMGA  +D +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 68  MQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 127

Query: 136 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 195
           VTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+RGRR
Sbjct: 128 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 187

Query: 196 PNPY-GFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
            NPY G+R RRPFM+   + P YGYG+ PRFRRPMRY PY
Sbjct: 188 FNPYMGYRFRRPFMSPYMYSP-YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Carg08049 vs. Swiss-Prot
Match: sp|O14327|PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-29
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 105 DARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNA 164
           DA+SVYVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NA
Sbjct: 53  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112

Query: 165 LLLNESELHGRQLKVSAKRTNVPGMKQ 191
           LLLN S LH R LKV+ KRTNVPGM +
Sbjct: 113 LLLNGSMLHERPLKVTPKRTNVPGMSR 139

[Close]

BLAST of Carg08049 vs. Swiss-Prot
Match: sp|Q9DDY9|PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-27
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 55  DLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQA--EKEEVDARSVYVG 114
           +LE +K R++E+EEEA           K+M       ++     +  EK E DARS+YVG
Sbjct: 109 ELEAIKARVREMEEEAEXXXXXXXXXXKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168

Query: 115 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNALLLNESEL 174
           NVDY  T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + ++V+ +L L+ES  
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228

Query: 175 HGRQLKVSAKRTNVPGM 189
            GRQ+KV  KRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245

[Close]

BLAST of Carg08049 vs. TrEMBL
Match: tr|A0A1S3BYF0|A0A1S3BYF0_CUCME (polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.3e-109
Identity = 210/219 (95.89%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALRE 75
           VYGGDIPDDAEMDADLDMSSGRADEEGY DAEP+N+NSKDLEDMKRRLKEIEEEAGALRE
Sbjct: 14  VYGGDIPDDAEMDADLDMSSGRADEEGY-DAEPSNANSKDLEDMKRRLKEIEEEAGALRE 73

Query: 76  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNR 135
           MQAKVEKEMGAVQEDSSSTSATQAEKEEVD+RSVYVGNVDYACTPEEVQQHFQSCGTVNR
Sbjct: 74  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNR 133

Query: 136 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 195
           VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR
Sbjct: 134 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 193

Query: 196 PNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           PNP+GFRGRRPF   AP YPSYGYGRVPRFRRPMRYRPY
Sbjct: 194 PNPFGFRGRRPFTPTAP-YPSYGYGRVPRFRRPMRYRPY 230

[Close]

BLAST of Carg08049 vs. TrEMBL
Match: tr|A0A1S3BWP8|A0A1S3BWP8_CUCME (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 7.1e-108
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALRE 75
           VYGGDIPDDAEMDADLDMSSGRADEEGY DAEP+N+NSKDLEDMKRRLKEIEEEAGALRE
Sbjct: 14  VYGGDIPDDAEMDADLDMSSGRADEEGY-DAEPSNANSKDLEDMKRRLKEIEEEAGALRE 73

Query: 76  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNR 135
           MQAKVEKEMGAVQ DSSSTSATQAEKEEVD+RSVYVGNVDYACTPEEVQQHFQSCGTVNR
Sbjct: 74  MQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNR 133

Query: 136 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 195
           VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR
Sbjct: 134 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 193

Query: 196 PNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           PNP+GFRGRRPF   AP YPSYGYGRVPRFRRPMRYRPY
Sbjct: 194 PNPFGFRGRRPFTPTAP-YPSYGYGRVPRFRRPMRYRPY 229

[Close]

BLAST of Carg08049 vs. TrEMBL
Match: tr|A0A0A0KXP6|A0A0A0KXP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025170 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 9.2e-108
Identity = 208/219 (94.98%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 16  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALRE 75
           VYGGDIPDDAE+DADLDMSSGRADEEGY DAEP+N+NSKDLEDMKRRLKEIEEEAGALRE
Sbjct: 14  VYGGDIPDDAELDADLDMSSGRADEEGY-DAEPSNANSKDLEDMKRRLKEIEEEAGALRE 73

Query: 76  MQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNR 135
           MQAKVEKEMGAVQ DSSSTSATQAEKEEVD+RSVYVGNVDYACTPEEVQQHFQSCGTVNR
Sbjct: 74  MQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNR 133

Query: 136 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 195
           VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR
Sbjct: 134 VTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRR 193

Query: 196 PNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           PNP+GFRGRRPF+  AP YPSYGYGRVPRFRRPMRYRPY
Sbjct: 194 PNPFGFRGRRPFIPTAP-YPSYGYGRVPRFRRPMRYRPY 229

[Close]

BLAST of Carg08049 vs. TrEMBL
Match: tr|U5FZN4|U5FZN4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G115100v3 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 9.0e-95
Identity = 199/234 (85.04%), Postives = 213/234 (91.03%), Query Frame = 0


Query: 1   MEHNFXXXXXXXXXXVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           M+H  XXXXXXXXXXVYGG+IPD+ EMDAD+DMSS RA+E+ Y D      NSKDLEDMK
Sbjct: 1   MDHLHXXXXXXXXXXVYGGEIPDEGEMDADVDMSS-RAEEDEYQD-----PNSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           +RLKEIEEEAGALREMQAKVEKEMGAVQ DS   SATQAEKEEVD+RS+YVGNVDY+CTP
Sbjct: 61  KRLKEIEEEAGALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVDYSCTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           KRTNVPGMKQ+RGRRP+PYG R RRPFM  APFYP+YGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQFRGRRPSPYGLRSRRPFM-PAPFYPAYGYGRVPRFRRPMRYRPY 226

[Close]

BLAST of Carg08049 vs. TrEMBL
Match: tr|A0A1R3G2E1|A0A1R3G2E1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_37303 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 3.4e-94
Identity = 190/223 (85.20%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 16  VYGGDIPD-DAEMDADLDMSSGRADEEGYD---DAEPTNSNSKDLEDMKRRLKEIEEEAG 75
           VYGG+IPD + EMDAD+DMS G  D EG D   D +P NSNSKDLEDMK+RLKEIEEEAG
Sbjct: 11  VYGGEIPDEEGEMDADIDMSGGPEDYEGIDQDLDQDP-NSNSKDLEDMKKRLKEIEEEAG 70

Query: 76  ALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCG 135
           ALREMQAKVEKEMGAVQ DSSS SATQAEKEEVD+RS+YVGNVDYACTPEEVQQHFQSCG
Sbjct: 71  ALREMQAKVEKEMGAVQ-DSSSASATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 130

Query: 136 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 195
           TVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN+PGMKQY
Sbjct: 131 TVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQY 190

Query: 196 RGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235
           RGRRPNPY FR RRP+M    F+P Y YGRVPRFRRPMRYRPY
Sbjct: 191 RGRRPNPY-FRSRRPYMPGPAFFPPYSYGRVPRFRRPMRYRPY 230

The following BLAST results are available for this feature:

BLAST of Carg08049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516160.1	2.7e-119	99.57	polyadenylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941798.1	5.1e-118	95.30	polyadenylate-binding protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022989860.1	8.7e-118	98.73	polyadenylate-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023516168.1	1.9e-117	99.15	polyadenylate-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022941799.1	3.7e-116	94.87	polyadenylate-binding protein 1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg08049 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51120.2	2.1e-73	60.38	polyadenylate-binding protein 1	[more]
AT5G10350.1	3.0e-72	69.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	3.4e-63	63.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G16940.2	2.8e-09	39.29	Splicing factor, CC1-like	[more]
AT3G12640.1	2.8e-09	32.65	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg08049 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93VI4\|PABN1_ARATH	1.1e-76	70.98	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
sp\|Q9LX90\|PABN3_ARATH	5.5e-71	69.51	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
sp\|Q9FJN9\|PABN2_ARATH	6.1e-62	63.18	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
sp\|O14327\|PAB2_SCHPO	5.2e-29	73.56	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
sp\|Q9DDY9\|PAB2A_XENLA	4.8e-27	49.64	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of Carg08049 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYF0\|A0A1S3BYF0_CUCME	1.3e-109	95.89	polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BWP8\|A0A1S3BWP8_CUCME	7.1e-108	95.43	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KXP6\|A0A0A0KXP6_CUCSA	9.2e-108	94.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025170 PE=4 SV=1	[more]
tr\|U5FZN4\|U5FZN4_POPTR	9.0e-95	85.04	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G115100v3 PE=...	[more]
tr\|A0A1R3G2E1\|A0A1R3G2E1_9ROSI	3.4e-94	85.20	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_37303 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08049-RA	Carg08049-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..103
None	No IPR available	PANTHER	PTHR43987	FAMILY NOT NAMED	coord: 50..234
None	No IPR available	PANTHER	PTHR43987:SF4	POLYADENYLATE-BINDING PROTEIN 1	coord: 50..234
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 108..179 e-value: 1.29923E-48 score: 155.527
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..179 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 109..177 e-value: 2.0E-16 score: 59.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..183 score: 16.773
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 23..190 e-value: 4.2E-27 score: 97.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 96..206

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08049	Cla010692	Watermelon (97103) v1	carwmB0369
Carg08049	Cla002486	Watermelon (97103) v1	carwmB0367
Carg08049	Csa4G025170	Cucumber (Chinese Long) v2	carcuB0403
Carg08049	MELO3C017625	Melon (DHL92) v3.5.1	carmeB0384
Carg08049	ClCG07G017210	Watermelon (Charleston Gray)	carwcgB0373
Carg08049	CSPI04G04320	Wild cucumber (PI 183967)	carcpiB0408
Carg08049	Cucsa.093920	Cucumber (Gy14) v1	carcgyB0431
Carg08049	CmoCh04G003960	Cucurbita moschata (Rifu)	carcmoB0514
Carg08049	Cp4.1LG01g03390	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08049	Cp4.1LG14g05150	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08049	CsGy4G004230	Cucumber (Gy14) v2	carcgybB0382
Carg08049	MELO3C017625.2	Melon (DHL92) v3.6.1	carmedB0388
Carg08049	CsaV3_4G004410	Cucumber (Chinese Long) v3	carcucB0405
Carg08049	Cla97C07G144230	Watermelon (97103) v2	carwmbB0400
Carg08049	Bhi01G001985	Wax gourd	carwgoB0460

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08049	Carg16773	Silver-seed gourd	carcarB406

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08049	Wax gourd	carwgoB0456
Carg08049	Cucurbita maxima (Rimu)	carcmaB0526
Carg08049	Cucurbita maxima (Rimu)	carcmaB0529
Carg08049	Cucurbita moschata (Rifu)	carcmoB0509
Carg08049	Bottle gourd (USVL1VR-Ls)	carlsiB339
Carg08049	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08049	Bottle gourd (USVL1VR-Ls)	carlsiB347
Carg08049	Watermelon (Charleston Gray)	carwcgB0367
Carg08049	Watermelon (97103) v1	carwmB0374