CSPI04G04320 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G04320
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Polyadenylate-binding 2
Location	Chr4 : 2813442 .. 2818912 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAAAAAAGAAAAAAAAAAAGAAAAGGAAAAAAAGATAATATGAAAAGAAGAGTCGGAGACAGGATCCGAAACCTAATCTTCATTCAATTGGGAACCAAATACACAACTTACCCACCATCGATCGAGGGGCCACCGGAGTCGGAATCGGAGACGGAGATGGAGCGCAATTATTCCTACGACGAGCACGAGCACGAAGTTTACGGTGGGGATATTCCCGACGACGCCGAGTTGGATGCCGACCTCGACATGTCTTCTGGTAGGGCCGACGAAGAAGGCTACGACGCTGAGCCTAGTAACGCTAACTCCAAGGTACCCTTTTCGACTTCTTCTCTCTTATTTTTCATCGACTCTTGTCTCTGATTGATTCTATGGGGGTTTCGTTCTTTTTTTTTTTTAAAAAAAAATTATTTAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCTGGTGCCCTTCGGGAAATGCAGGCTAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGGTATCTTTTTATTTCATCTCTGTAATTCAGTTAGTTGGTTATTGAATTATGTTCTTGATGTTTGTGAGGGGAATTTAGGTTTGTTGAATTAGCTCTGTAGCTGTTTTTCTTTACAGGAAAATACCAAAAAGGGGGGGAAAAACCTAGTTTTAACCTTTCAAGACTGATAACATGTTTTCATATCGAAGGATTGAATATAGCTTCCCGAATCTTGAATCAGGTTGCGTGAAGTTCTAAGAACTGTTTGGGTTTAATCGTTATTAGCTGTATTGTACTCGAAGGATGCAATGGTGGGTTTTTGGTATTCTAGTTTCAGAGAGTCTAGAATTTGGCGTGGTTTGCAGTGAAGGGATGTTGGAGGAAAATGGGAGAGTTTTGTGATTAACGGAGGTTGTCAAAAAGTTATTTAGTGGATTAAGAGTCCCTGGTGGGAAGTTTGGTAGCTGGTCTACTTCCATAACTATCTCTAGTGTCCATACGGTGTAATCAGGGAGTTCAATAATTCTTACGTCTCTTTTCCTAAACAATTGAAGCCTGTTTTTGGATGCACAAACTTCTTCAAATTTGTTTTCTCATAAAAACATAATAAAATAAAACAAAAGATAGTTAGATATTGAAAATTCCGAGGCTTTGTGAGTTTTTATTTATGATTGTTATGTCAAATAGGTGTAAAACGTTATTAGTTATTTTGCTGGCAATCAACCAGAGAGTTCAAACCATTTTTATATTTGGATAATATGTTTGTCCTTTATCTGGTTTTAATGGAAGTTAAGTTTTCTCTTACGTATTCTATTTGAACAAAAAAGAATTGAATTTTGGAAGAGTATAACAATTATGTCGCTTTAATATTGCCAAATTTTTATTATATTTTACTTATCAATGAGACAAATCAATTGTTTTAATGTAACCTCATGTCCTTGCCAATCGTAGGTATATTGCATTTCTAGCTGTTCAAAACCTTTTAACTTTCAGTTTGTGTTTGTGGAATATGCAGATGCATGTGTTCTATGTGGCATGCATGTCTGCTCAATACATACTTTATAGGATATTTTTATATAGCAAAGAGACTGATCCTTTTCTCGTCATCATTTTATCTATTTTTTGGTGGTGAGAAAATATTAATTAGTGGAAATCTTATCTCATACTTCGCTAGTTTGGTTAACCATCTTTTTACAGTATGTAGTTTTTTTTTGTAATTGACTTGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACACAGGCTGAAAAGGAGGAAGTAGATTCTCGATCTGTATATGTTGGTAATGTGAGATTTATCACCCCTTTCCTCCCACTGTGTATTTTAATATTGAAGTTTTGCAGTACACATTTCTAGTATTACACCTTTACTTTTTACTCTAACTATCTAACGTAGTGCAATACATGCTTTTTAGTCATGCTTTCAAAGACCAAGTCAAATTTGGAAAACTAAAAAGTAGCTTTTGAAAACTTGATTTTGTTTTTGAAATTTAGTTTTGAATTCAAAGCTGTTTTTAGGTAAGATGAAAAGCTTACCAACAAAATGATGAGGAAACAAGTGTAAATTTAAAAATAGAAAACTAAAAGTAAAATGGTTATAAAGAAAATGCGTAACTTTTTTTCTTAATTTTTCTTTTTACTTTGAATGTCATCTATTTTTTGGCAAATTATAACGTTATTGGCACAACTTATTAAACAGAAAGTCCATGCCAAAAAGACCCATTAGTTAGCTTAATCAGGAACCTCTTCCCAGCCCATTCTCTTCTCATAGACAAGCGTCCTATTTCTTTCTTGCCCAAAGAAATGTATTCTTCGTGTTGATTCATCATGTTTTTGCTCTCTTTCTTTCTCTCTTCCTACTCCCCGTCCTCCCCTGCCTCCTCCTTATTTTTCTTAAAATTTAGGGCAAATATCAATTTACACCCGTAAACTTTAGGAGTTGTGTCAATTTAAACCCCAAACTAATAATTGTATCAATTCAAACCCTAAACTTTGGAGGTTGTATCAATTTAAACCCTAAACTAATAATTGTATTAATTTAAATCTTAACCTTTCATAAATGCATTATTGACCTCTACTTTCCCAAGAGTGTCCAAGTAAAACAAAATGGAGCATTCAAATTGATATATTTATAAAAGTTCAGAGTCTAAGTTGACTCACTTGTAAAGGTTTAGAGTATAAATTGATACAATTATTAGTTTGAAATTATGATTGACACAACTCTCAAAGTTTATGTAAATTGATTCAAACCCCAAAGTCTGGGTATAAATTGAGAATTTTCCTAAATTTTATTTAATATAAAAATTGAAGTCTATGGTCATGCAACAAGTAGTTAATATTATTTTCAGGTTACTTAAGTCACAAGTCTTTACGGGAGTTGGAATGAAAAAGAGACCAAATTCAGCATATTGTCTGTTCAAGAGGAATTTGAGATTAATGGCTGTTGATACTGAGCAAACAACAGCCAGGTTCTATAGTCATATTTGGAAACGTCTTCTGTAATCTATCCACTTTGTTGCACTCTACTGGCAAATGGTCCTAAGAATTACTTGTTCCCTTCCTGGGTGCATTGCATTAATCTAGCAATGAAGTTCCAAAAAGTTTATTCGATTCTAACTTATCCTGATTTCTTCTTGTTACCCTTCATGAGTTGATGCTGCACATCCTTGCGAGCTTCTTGCACTCATTAGTTCTTTCTCAGTATTTTCCTGCCAAAAGGAGCTTTTCCCACCATCTCTATCCTGCAACTTTTACTTGTTGTGACGTTTTCTATTCAGTGTTTTAGTCCGCGTACTTGGCTACACACATTTCCAGTCTACTCCCACCAAGGGCCACACACATTTCCAGTCTTTCTCTCTCTCATAAACTACCTTTACATTGTTTCATTTTTCATTTATATTACGTGTGTCGAGTCAGCATCAGCTACTACTAGGAAATAGGAATAATATTTTATCAATGAAATTCTAGATCTAAAGACATTTTTCTTTTAACATGATCGAAATCTGAAGTTCTGTTAGTCTGATTAGGTCTAGCTAGGTGGATGGCAGATTGACGTGTCATTTCTCCTTGGGCATTTTTTCCTCTCGTCTTATTTTACATGGCTTGCCAACATCATATCAATACAAAATGATTTATTTTCTGTCCTGGTTTTTTACTTCAGGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCTTGTGGGACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCGAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCCTTGCTGTTAAATGAGTCAGAGTTGCATGGTCGTCAACTTAAGGTTTTTCGAACTTAGTTTTACACACTTTAACTTTCTATCAATAATGATTTACACTAATAGGATGCCGATAATGTATGTTTGCCGGAGGAAGACTTTGGGGGATAAGAGAAGTTCTGACTTATGAGTGGAAGGTGTATATAGAGGGGAAAATTATCTGTGGAAGCATTTGCTTTTGGTTAGTCGAGTTTACTAGGTTTCGGAGAGTAGAAGCTTCTGCATATTCCCAAGCTTGTACACTGTTTGTGGATTCGTAATATCGACTTCTATCACTGACCATTGGCCACTTTTTTGGTACATTTTGCAGGTCTCTGCTAAAAGGACAAATGTGCCGGGTATGAAGCAATACCGTGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATTCCCACCGCACCTTATCCTTCATATGGTTATGGGTAAGCACTAAACTACTATATTGCTTCTCACTCTATGGTATGACGAAGAATTTGAAGTGCTCGTATGCAAGTTGTAAGGCATGGTATCGTGCCTGGAGGTTTATGTATTTGTGTAGCTTTCTTGACACCACCTCTGAGAGGTCATAGTTTTTTGCCTTCCTGCTCCACATAGGATGTAATATAAGAAGTCTTTTCATGTTGGTAAAATATCGTATTTAGGAATAAGTAATCTCTCCCAATGTTTCCTGTTTTGTTATGGTATACATGCGATTCAATTGTGAAAATTTACAAACAAATTTCAATGACAAGCCAATTGGTCATAAATATTCTACTATTTTGACAAAATAGTTTAGTTTGCATATATACATATATATATATTACCATTTCTTCTTTTGGATATTTAAATCATGATTGTGCTGCATTTTTTTAAAATTTTTTAAAAATGATTATCATTCAGGTGTAAGAGACAAATTGCACTATTTTAGAACGATCAACTTCTAAATGCATATTGTTGAAGGGGAATTAGAGGATTGACTGTCCACCTCTTTTCTTCTCTCTTTACTGATTTGAAGAGATTAGTGGAATGTTGTAAACCTCTAATTGAAAATTTAATTCCTTTCACTTCCAGCTTTATAATGCGAGTTTCTATTTTCTTACTTTATGCAGAAGGGTCCCAAGGTTCAGGCGACCGATGCGGTACAGACCCTACTAGGAGATACAATGCTCGTACTACTGCAAAGTTATTGTTCGGGATCTAGGTTCCTTCAACTCAATGGTGTTTTTACCATCTCTATAACTTGGAGGGTGTGGAAAACATTGTACTTTATTGACGTTTCAACAGTCCCACTTGAGTTTCTTATGAACTTGGTAGCAGTTTGTAGCTTTGAGGAGGTAAAGATTTGTGGACTGGTTAACAATTTGTTGGCTCTGGAAGGGCTGAAAAAACCATGTTATCAACCATAAGAGAATTTGGAAGAAAGAAAATTAAGGAAATTAAAGGACATGTTCTTGTGTATGGATGAATTGGAACTGATCAGGATGTAGAATTCTTTGTTATTTGAGGAGTAATTATAAGTTGATATGATGATATGTAGAACTATCCTACCTTTTGTCTTCTCTCCAGTTTGATGGGTTTAGCAATGAAATTTCTTGTTTGGTTT

mRNA sequence

ATGAAAAGAAGAGTCGGAGACAGGATCCGAAACCTAATCTTCATTCAATTGGGAACCAAATACACAACTTACCCACCATCGATCGAGGGGCCACCGGAGTCGGAATCGGAGACGGAGATGGAGCGCAATTATTCCTACGACGAGCACGAGCACGAAGTTTACGGTGGGGATATTCCCGACGACGCCGAGTTGGATGCCGACCTCGACATGTCTTCTGGTAGGGCCGACGAAGAAGGCTACGACGCTGAGCCTAGTAACGCTAACTCCAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCTGGTGCCCTTCGGGAAATGCAGGCTAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGATTCATCCAGTACCTCTGCAACACAGGCTGAAAAGGAGGAAGTAGATTCTCGATCTGTATATGTTGGTAATGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCTTGTGGGACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCGAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCCTTGCTGTTAAATGAGTCAGAGTTGCATGGTCGTCAACTTAAGGTCTCTGCTAAAAGGACAAATGTGCCGGGTATGAAGCAATACCGTGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATTCCCACCGCACCTTATCCTTCATATGGTTATGGAAGGGTCCCAAGGTTCAGGCGACCGATGCGGTACAGACCCTACTAG

Coding sequence (CDS)

ATGAAAAGAAGAGTCGGAGACAGGATCCGAAACCTAATCTTCATTCAATTGGGAACCAAATACACAACTTACCCACCATCGATCGAGGGGCCACCGGAGTCGGAATCGGAGACGGAGATGGAGCGCAATTATTCCTACGACGAGCACGAGCACGAAGTTTACGGTGGGGATATTCCCGACGACGCCGAGTTGGATGCCGACCTCGACATGTCTTCTGGTAGGGCCGACGAAGAAGGCTACGACGCTGAGCCTAGTAACGCTAACTCCAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCTGGTGCCCTTCGGGAAATGCAGGCTAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGATTCATCCAGTACCTCTGCAACACAGGCTGAAAAGGAGGAAGTAGATTCTCGATCTGTATATGTTGGTAATGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCTTGTGGGACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCGAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCCTTGCTGTTAAATGAGTCAGAGTTGCATGGTCGTCAACTTAAGGTCTCTGCTAAAAGGACAAATGTGCCGGGTATGAAGCAATACCGTGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATTCCCACCGCACCTTATCCTTCATATGGTTATGGAAGGGTCCCAAGGTTCAGGCGACCGATGCGGTACAGACCCTACTAG

Homology

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BLAST of CSPI04G04320 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-80
Identity = 166/230 (72.17%), Postives = 187/230 (81.30%), Query Frame = 1


Query: 46  YDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDA-----EPSNANSKDLEDMKRRLK 105
           +DE EHEVYGG+IP++ E + D +       EEG  A     EP ++ S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSS-SRDLEDMKKRIK 63

Query: 106 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 165
           EIEEEAGALREMQAK EK+MGA QD S    + AEKEEVDSRS+YVGNVDYACTPEEVQQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQ 123

Query: 166 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNV 225
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNV
Sbjct: 124 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNV 183

Query: 226 PGMKQYRGR-RPNPFGFRGRRPFIPTAP-YPSYGYGRVPRFRRPMRYRPY 269
           PGM+Q+RGR RP    FR  R F+P  P YP Y YGRVPRFRRPMRYRPY
Sbjct: 184 PGMRQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY 227

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BLAST of CSPI04G04320 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.5e-77
Identity = 155/223 (69.51%), Postives = 181/223 (81.17%), Query Frame = 1


Query: 47  DEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 106
           +E EHEVYGG+IPD  E+D D++  +   D    D +      K+L++MK+RLKE+E+EA
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAV----KELDEMKKRLKEMEDEA 61

Query: 107 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCG 166
            ALREMQAKVEKEMGA QD +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQHFQ+CG
Sbjct: 62  AALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 121

Query: 167 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 226
           TV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+
Sbjct: 122 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 181

Query: 227 RGRRPNPF-GFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           RGRR NP+ G+R RRPF+    Y  YGYG+ PRFRRPMRY PY
Sbjct: 182 RGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

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BLAST of CSPI04G04320 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.4e-76
Identity = 158/226 (69.91%), Postives = 176/226 (77.88%), Query Frame = 1


Query: 47  DEHEHEVYGGDIPDDAELDA---DLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIE 106
           +E EHEVYGG+IP+  + D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAVT---------ELAEMKRRLKEME 61

Query: 107 EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQ 166
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HFQ
Sbjct: 62  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 121

Query: 167 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 226
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 122 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 181

Query: 227 KQYRGRRPNP-FGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           KQY   R NP  G+R RRPF+P   Y  YGYG+ PRFRRPMRY PY
Sbjct: 182 KQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

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BLAST of CSPI04G04320 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-36
Identity = 88/160 (55.00%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 81  DAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVD 140
           D +  +   K+L +MK R+ E+E EA  LR MQ +++ E         T A + +KE +D
Sbjct: 3   DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESID 62

Query: 141 SRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNAL 200
           ++SVYVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NAL
Sbjct: 63  AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 122

Query: 201 LLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGR 240
           LLN S LH R LKV+ KRTNVPGM + RGR       RGR
Sbjct: 123 LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153

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BLAST of CSPI04G04320 vs. Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.2e-31
Identity = 76/163 (46.63%), Postives = 108/163 (66.26%), Query Frame = 1


Query: 81  DAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEE 140
           + E S     +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +  EK+E
Sbjct: 33  EEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQE 92

Query: 141 VDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQN 200
           +D+RSVYVGNVDY  + EE++ HF  CGT+NRVTIL +K  GHPKGFAY+EF   + V+ 
Sbjct: 93  IDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVET 152

Query: 201 ALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRR 241
           AL +NE+   GRQ+KV +KRTN PG+          F  RG R
Sbjct: 153 ALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195

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BLAST of CSPI04G04320 vs. TrEMBL
Match: A0A0A0KXP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025170 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.4e-124
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 40  MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 99
           MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 100 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 159
           KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 120

Query: 160 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 219
           QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN
Sbjct: 121 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 180

Query: 220 VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 229

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BLAST of CSPI04G04320 vs. TrEMBL
Match: U5FZN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11480g PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 8.3e-99
Identity = 188/226 (83.19%), Postives = 206/226 (91.15%), Query Frame = 1


Query: 43  NYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEI 102
           ++  DEHEHEVYGG+IPD+ E+DAD+DMSS RA+E+ Y     + NSKDLEDMK+RLKEI
Sbjct: 6   DHEEDEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSKDLEDMKKRLKEI 65

Query: 103 EEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 162
           EEEAGALREMQAKVEKEMGAVQDS   SATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHF
Sbjct: 66  EEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHF 125

Query: 163 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 222
           QSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSAKRTNVPG
Sbjct: 126 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPG 185

Query: 223 MKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           MKQ+RGRRP+P+G R RRPF+P   YP+YGYGRVPRFRRPMRYRPY
Sbjct: 186 MKQFRGRRPSPYGLRSRRPFMPAPFYPAYGYGRVPRFRRPMRYRPY 226

[Close]

BLAST of CSPI04G04320 vs. TrEMBL
Match: U5FQA0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12230g PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-98
Identity = 188/226 (83.19%), Postives = 205/226 (90.71%), Query Frame = 1


Query: 43  NYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEI 102
           ++  DEHEHEVYGG+IPD+ E+DAD DMSS RA+E+ Y     + NSKDLEDMKRRLKEI
Sbjct: 6   DHEEDEHEHEVYGGEIPDEGEMDADADMSS-RAEEDEY----QDPNSKDLEDMKRRLKEI 65

Query: 103 EEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 162
           EEEAGALREMQAKVEKEMGAVQDS   SATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHF
Sbjct: 66  EEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHF 125

Query: 163 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 222
           QSCGTVNRVTILTDKFG PKGFAYVEF+EVDAVQNA+LLNESELHGRQLKVSAKRTNVPG
Sbjct: 126 QSCGTVNRVTILTDKFGQPKGFAYVEFIEVDAVQNAVLLNESELHGRQLKVSAKRTNVPG 185

Query: 223 MKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           MKQYRGRRP+P+GFR +R F+P   YP+YGYGRVPRFRRPMRYRPY
Sbjct: 186 MKQYRGRRPSPYGFRSQRAFMPAPFYPAYGYGRVPRFRRPMRYRPY 226

[Close]

BLAST of CSPI04G04320 vs. TrEMBL
Match: A0A067JR63_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26326 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 191/225 (84.89%), Postives = 204/225 (90.67%), Query Frame = 1


Query: 46  YDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEE 105
           ++E EHEVYG +IPD+ E+DAD+DMSS R +E+    E    NSKDLEDMK+RLKEIEEE
Sbjct: 4   HEEQEHEVYGSEIPDEGEMDADIDMSS-RLEED----EDQGPNSKDLEDMKKRLKEIEEE 63

Query: 106 AGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSC 165
           AGALREMQAKVEKEMGAVQDSSS SATQAEKEEVD+RS+YVGNVDYACTPEEVQQHFQSC
Sbjct: 64  AGALREMQAKVEKEMGAVQDSSSASATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSC 123

Query: 166 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 225
           GTVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN+PGMKQ
Sbjct: 124 GTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQ 183

Query: 226 YRGRRPNP-FGFRGRRPFIPTAP-YPSYGYGRVPRFRRPMRYRPY 269
           YRGRRPNP FGFR RRPF+P AP YP Y YGRVPRFRRPMRYRPY
Sbjct: 184 YRGRRPNPYFGFRSRRPFMPAAPFYPPYSYGRVPRFRRPMRYRPY 223

[Close]

BLAST of CSPI04G04320 vs. TrEMBL
Match: G3LUH8_CITSI (Poly(A)-binding protein 1 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.5e-97
Identity = 188/231 (81.39%), Postives = 203/231 (87.88%), Query Frame = 1


Query: 46  YDEHEHEVYGGDIPDDAELDADLDMSSGRAD---EEGYDA-----EPSNANSKDLEDMKR 105
           +DE EH+VYGG+IPD+ + D D+D      D   E  +DA     E  NANSKDLEDMK+
Sbjct: 4   HDEQEHDVYGGEIPDEMDADIDVDEHEHEHDQDHEHEHDADNENEEDPNANSKDLEDMKK 63

Query: 106 RLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEE 165
           RLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS+YVGNVDYACTPEE
Sbjct: 64  RLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEE 123

Query: 166 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 225
           VQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE+DAVQNALLLNE+ELHGRQLKVSAKR
Sbjct: 124 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 183

Query: 226 TNVPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           TN+PGMKQ+RGRRPN FGFRGRRPFIP  P+  YGYGR+PRFRRPMRYRPY
Sbjct: 184 TNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPYGYGRIPRFRRPMRYRPY 234

[Close]

BLAST of CSPI04G04320 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 288.5 bits (737), Expect = 4.2e-78
Identity = 155/223 (69.51%), Postives = 181/223 (81.17%), Query Frame = 1


Query: 47  DEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 106
           +E EHEVYGG+IPD  E+D D++  +   D    D +      K+L++MK+RLKE+E+EA
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAV----KELDEMKKRLKEMEDEA 61

Query: 107 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCG 166
            ALREMQAKVEKEMGA QD +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQHFQ+CG
Sbjct: 62  AALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 121

Query: 167 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 226
           TV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+
Sbjct: 122 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 181

Query: 227 RGRRPNPF-GFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           RGRR NP+ G+R RRPF+    Y  YGYG+ PRFRRPMRY PY
Sbjct: 182 RGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CSPI04G04320 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 285.4 bits (729), Expect = 3.6e-77
Identity = 158/226 (69.91%), Postives = 176/226 (77.88%), Query Frame = 1


Query: 47  DEHEHEVYGGDIPDDAELDA---DLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIE 106
           +E EHEVYGG+IP+  + D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAVT---------ELAEMKRRLKEME 61

Query: 107 EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQ 166
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HFQ
Sbjct: 62  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 121

Query: 167 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 226
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 122 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 181

Query: 227 KQYRGRRPNP-FGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           KQY   R NP  G+R RRPF+P   Y  YGYG+ PRFRRPMRY PY
Sbjct: 182 KQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CSPI04G04320 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-76
Identity = 164/267 (61.42%), Postives = 188/267 (70.41%), Query Frame = 1


Query: 46  YDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDA-----EPSNANSKDLEDMKRRLK 105
           +DE EHEVYGG+IP++ E + D +       EEG  A     EP ++ S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSS-SRDLEDMKKRIK 63

Query: 106 EIEEEAGALREMQAKVEKEMGAVQ------------------------------------ 165
           EIEEEAGALREMQAK EK+MGA Q                                    
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYE 123

Query: 166 -DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKG 225
            +  ++  + AEKEEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKG
Sbjct: 124 KEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKG 183

Query: 226 FAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPNPFGFRGRRPF 269
           FAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR  R F
Sbjct: 184 FAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGF 243

[Close]

BLAST of CSPI04G04320 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 34/101 (33.66%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 114 AKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTI 173
           A V++E    +    T +T    E+  SR+++V NV +  T + + +HF   G V +  I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511

Query: 174 LTD-KFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 214
           +TD   G P G AY+EF   +A +NAL L+ +    R LK+
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI 552

[Close]

BLAST of CSPI04G04320 vs. TAIR10
Match: AT2G36660.1 (AT2G36660.1 poly(A) binding protein 7)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 1


Query: 143 SVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF-VEVDAVQNALLL 202
           ++YV NV+ A T EE+++HF  CGT+    ++ D+ G  KGF +V F    +A+      
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 203 NESELHGRQLKVS 215
           +    HG+ L V+
Sbjct: 365 HGQMFHGKPLYVA 377

[Close]

BLAST of CSPI04G04320 vs. NCBI nr
Match: gi|778690329|ref|XP_004146890.2| (PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 529.6 bits (1363), Expect = 3.1e-147
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1


Query: 1   MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD 60
           MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD
Sbjct: 1   MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD 60

Query: 61  DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM 120
           DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM
Sbjct: 61  DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM 120

Query: 121 GAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGH 180
           GAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGH
Sbjct: 121 GAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGH 180

Query: 181 PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRR 240
           PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRR
Sbjct: 181 PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRR 240

Query: 241 PFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           PFIPTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 241 PFIPTAPYPSYGYGRVPRFRRPMRYRPY 268

[Close]

BLAST of CSPI04G04320 vs. NCBI nr
Match: gi|778690327|ref|XP_011653101.1| (PREDICTED: polyadenylate-binding protein 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 525.0 bits (1351), Expect = 7.6e-146
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 1


Query: 1   MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD 60
           MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD
Sbjct: 1   MKRRVGDRIRNLIFIQLGTKYTTYPPSIEGPPESESETEMERNYSYDEHEHEVYGGDIPD 60

Query: 61  DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM 120
           DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM
Sbjct: 61  DAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM 120

Query: 121 GAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 180
           GAVQ DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 121 GAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 180

Query: 181 HPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGR 240
           HPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGR
Sbjct: 181 HPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGR 240

Query: 241 RPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           RPFIPTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 241 RPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269

[Close]

BLAST of CSPI04G04320 vs. NCBI nr
Match: gi|700198029|gb|KGN53187.1| (hypothetical protein Csa_4G025170 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 6.3e-124
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 40  MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 99
           MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 100 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 159
           KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 120

Query: 160 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 219
           QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN
Sbjct: 121 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 180

Query: 220 VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 229

[Close]

BLAST of CSPI04G04320 vs. NCBI nr
Match: gi|659107753|ref|XP_008453840.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 448.4 bits (1152), Expect = 9.1e-123
Identity = 226/229 (98.69%), Postives = 228/229 (99.56%), Query Frame = 1


Query: 40  MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 99
           MERNY+YDEHEHEVYGGDIPDDAE+DADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 100 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 159
           KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 120

Query: 160 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 219
           QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN
Sbjct: 121 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 180

Query: 220 VPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           VPGMKQYRGRRPNPFGFRGRRPF PTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 VPGMKQYRGRRPNPFGFRGRRPFTPTAPYPSYGYGRVPRFRRPMRYRPY 229

[Close]

BLAST of CSPI04G04320 vs. NCBI nr
Match: gi|659107751|ref|XP_008453839.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 443.7 bits (1140), Expect = 2.2e-121
Identity = 226/230 (98.26%), Postives = 228/230 (99.13%), Query Frame = 1


Query: 40  MERNYSYDEHEHEVYGGDIPDDAELDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 99
           MERNY+YDEHEHEVYGGDIPDDAE+DADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 100 KEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 159
           KEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 160 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 219
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 220 NVPGMKQYRGRRPNPFGFRGRRPFIPTAPYPSYGYGRVPRFRRPMRYRPY 269
           NVPGMKQYRGRRPNPFGFRGRRPF PTAPYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 NVPGMKQYRGRRPNPFGFRGRRPFTPTAPYPSYGYGRVPRFRRPMRYRPY 230

The following BLAST results are available for this feature:

BLAST of CSPI04G04320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PABN1_ARATH	2.5e-80	72.17	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1	[more]
PABN2_ARATH	7.5e-77	69.51	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1	[more]
PABN3_ARATH	6.4e-76	69.91	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1	[more]
PAB2_SCHPO	3.8e-36	55.00	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
PABP2_DROPS	8.2e-31	46.63	Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pab...	[more]

BLAST of CSPI04G04320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXP6_CUCSA	4.4e-124	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025170 PE=4 SV=1	[more]
U5FZN4_POPTR	8.3e-99	83.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11480g PE=4 SV=1	[more]
U5FQA0_POPTR	2.4e-98	83.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12230g PE=4 SV=1	[more]
A0A067JR63_JATCU	2.7e-97	84.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26326 PE=4 SV=1	[more]
G3LUH8_CITSI	3.5e-97	81.39	Poly(A)-binding protein 1 OS=Citrus sinensis PE=1 SV=1	[more]

BLAST of CSPI04G04320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65260.1	4.2e-78	69.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	3.6e-77	69.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	2.3e-76	61.42	polyadenylate-binding protein 1	[more]
AT3G12640.1	1.4e-09	33.66	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G36660.1	1.8e-07	34.25	poly(A) binding protein 7	[more]

BLAST of CSPI04G04320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690329\|ref\|XP_004146890.2\|	3.1e-147	100.00	PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Cucumis sativus]	[more]
gi\|778690327\|ref\|XP_011653101.1\|	7.6e-146	99.63	PREDICTED: polyadenylate-binding protein 1-like isoform X1 [Cucumis sativus]	[more]
gi\|700198029\|gb\|KGN53187.1\|	6.3e-124	100.00	hypothetical protein Csa_4G025170 [Cucumis sativus]	[more]
gi\|659107753\|ref\|XP_008453840.1\|	9.1e-123	98.69	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo]	[more]
gi\|659107751\|ref\|XP_008453839.1\|	2.2e-121	98.26	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04320.1	CSPI04G04320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 144..212 score: 2.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 143..214 score: 4.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 142..218 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 125..214 score: 8.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 130..241 score: 9.77
None	No IPR available	unknown	Coil	Coil	coord: 85..119 scor
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 139..213 score: 6.0E-33coord: 103..121 score: 6.0
None	No IPR available	PANTHER	PTHR24012:SF436	PABPN1 PROTEIN	coord: 139..213 score: 6.0E-33coord: 103..121 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G04320	Cla010692	Watermelon (97103) v1	cpiwmB315
CSPI04G04320	Csa4G025170	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G04320	MELO3C017625	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G04320	ClCG07G017210	Watermelon (Charleston Gray)	cpiwcgB336
CSPI04G04320	MELO3C017625.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G04320	CsaV3_4G004410	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G04320	Cla97C07G144230	Watermelon (97103) v2	cpiwmbB326
CSPI04G04320	Cla97C01G018000	Watermelon (97103) v2	cpiwmbB273
CSPI04G04320	Bhi01G001985	Wax gourd	cpiwgoB378
CSPI04G04320	Cucsa.093920	Cucumber (Gy14) v1	cgycpiB103
CSPI04G04320	CmoCh04G003960	Cucurbita moschata (Rifu)	cmocpiB708
CSPI04G04320	Cp4.1LG01g03390	Cucurbita pepo (Zucchini)	cpecpiB398
CSPI04G04320	Cp4.1LG14g05150	Cucurbita pepo (Zucchini)	cpecpiB220
CSPI04G04320	CsGy4G004230	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G04320	Carg08049	Silver-seed gourd	carcpiB0408
CSPI04G04320	Carg16773	Silver-seed gourd	carcpiB0906

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G04320	Cucurbita pepo (Zucchini)	cpecpiB731
CSPI04G04320	Bottle gourd (USVL1VR-Ls)	cpilsiB243
CSPI04G04320	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G04320	Cucumber (Gy14) v2	cgybcpiB222
CSPI04G04320	Silver-seed gourd	carcpiB0746
CSPI04G04320	Cucumber (Chinese Long) v3	cpicucB234
CSPI04G04320	Watermelon (97103) v2	cpiwmbB274
CSPI04G04320	Wild cucumber (PI 183967)	cpicpiB156
CSPI04G04320	Cucurbita maxima (Rimu)	cmacpiB337
CSPI04G04320	Cucurbita maxima (Rimu)	cmacpiB716
CSPI04G04320	Cucurbita moschata (Rifu)	cmocpiB328
CSPI04G04320	Cucurbita moschata (Rifu)	cmocpiB604
CSPI04G04320	Cucumber (Chinese Long) v2	cpicuB194
CSPI04G04320	Watermelon (Charleston Gray)	cpiwcgB298