Carg07888 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07888
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SNF1-related protein kinase regulatory subunit beta-2-like
Location	Cucurbita_argyrosperma_scaffold_066 : 610956 .. 612257 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAGTGAGGGGGGGAAGCGAGGCGTGGGATCAGATTCAGGACTTTGTCAACCATGCCGTGAAGATGATTCCTGTTATCCTTATACCCCATCATCATTGGGCCACCATTCGATCTTCCTAACTCATCGGACAGAACATTAATCTTTTCTTCACTCTGTTTCACAGTTTTTCTCCTTTTCATTTTCCTTCCAATTCTGTAACATGAACGATGAAGCATAGGCCTTCGAGGGTTTCTCTTTGATGTGGTCCCTAATCGCTTGATTTTTATTTTGTTCTTTCTTTTTCTGTGGAGAATCGTTTTCCCCCCATTTTCTTTCTTTTTCGTCCCCCCACAAACGATTCTACAAGTGGGTTTGTTTGTTTGTTTGTTTGTTTTTTTTTAATTTGCTTTCCATTTATCCTTGTTCGTATTAATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTTAGTTCCCTTCACTTTGCCTTTACTTGCGTTTCTGGTTCGATGAAATTGATATCTGTATAATTGGAAATGCCTTTTGTTTCCTTTTCCGCTAAGCTTCTGCGGGGAATCTTGCCCTTTTCGTGTCCTTACTTTTCCTGCACAGTACATGTTTGATTTAAGTCCAACATGAATAAATTGACAATTTGGTGAATCTACAGGGCTATTATTACTACAATTCTTTGTGCAAATTCGATTGATTACCTCTTTCTTTTATTTTCTCATTGGAATCTTGATAGAAAATTGATTTTCTTTGAACTTGTGTAGCTTGTAATTCACTTTGAATGCCTAGAAAGTTTACATCAATGTTCTTCTTTAGTTCTTATCATTGATATTGCTGTAGGTTAGTCTGTGGAATATTCTGTGATATCCATGATTCGAGTTCTATCTTCTTACAGGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGTGAGGGGGGGAAGCGAGGCGTGGGATCAGATTCAGGACTTTGTCAACCATGCCGTGAAGATGATTCCTGTTATCCTTATACCCCATCATCATTGGGCCACCATTCGATCTTCCTAACTCATCGGACAGAACATTAATCTTTTCTTCACTCTGTTTCACAGTTTTTCTCCTTTTCATTTTCCTTCCAATTCTGTAACATGAACGATGAAGCATAGGCCTTCGAGGGTTTCTCTTTGATGTGGTCCCTAATCGCTTGATTTTTATTTTGTTCTTTCTTTTTCTGTGGAGAATCGTTTTCCCCCCATTTTCTTTCTTTTTCGTCCCCCCACAAACGATTCTACAAGTGGGTTTGTTTGTTTGTTTGTTTGTTTTTTTTTAATTTGCTTTCCATTTATCCTTGTTCGTATTAATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

Coding sequence (CDS)

ATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

Protein sequence

MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWSHGGKEVAVEGSWDNWKMKFVSLLS

Homology

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_023003375.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH
Sbjct: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS
Sbjct: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 138

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_022926790.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata])

HSP 1 Score: 243.8 bits (621), Expect = 3.5e-61
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGNVNGREDEDG-XXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG 60
           MGNVNGREDEDG XXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG
Sbjct: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120
           HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW
Sbjct: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120

Query: 121 SHGGKEVAVEGSWDNWKMK 139
           SHGGKEVAVEGSWDNWKMK
Sbjct: 121 SHGGKEVAVEGSWDNWKMK 139

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_023517360.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 3.5e-61
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGNVNGREDEDG-XXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG 60
           MGNVNGREDEDG XXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG
Sbjct: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120
           HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW
Sbjct: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120

Query: 121 SHGGKEVAVEGSWDNWKMK 139
           SHGGKEVAVEGSWDNWKMK
Sbjct: 121 SHGGKEVAVEGSWDNWKMK 139

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_008440979.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 114/138 (82.61%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDG      XXXXXXXXX     SLPDGLAAPPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDG---NPSXXXXXXXXXGGRRSSLPDGLAAPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPV+PLPRPDEVH++SQSWM+NSSW D+V ++QGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVIPLPRPDEVHSSSQSWMHNSSWFDEVGSDQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_004134805.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN49035.1 hypothetical protein Csa_6G511020 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 113/138 (81.88%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDG      XXXXXXXX      SLPDGL+ PPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDG---NPSXXXXXXXXVGGRRSSLPDGLSVPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPVVPLPRPDEVH++SQSWM+NSSW D+V +EQGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVVPLPRPDEVHSSSQSWMHNSSWFDEVGSEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. TAIR10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-30
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 54  PAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQG 113
           P ELMG SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQG
Sbjct: 14  PPELMGQSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQG 73

Query: 114 IPTMITWSHGGKEVAVEGSWDNWKMK 139
           IPTMITW HGGKE+AVEGSWDNWK +
Sbjct: 74  IPTMITWCHGGKEIAVEGSWDNWKTR 99

[Close]

BLAST of Carg07888 vs. TAIR10
Match: AT5G21170.2 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 69  IPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWSHGGKEVAV 128
           +P+  +    VPV PL R +     +  W N S  V D   EQGIPT+ITW+ GG +VAV
Sbjct: 94  VPNGCISCRMVPVAPLQRANAPPPNNIQW-NQSQRVFDNPPEQGIPTIITWNQGGNDVAV 153

Query: 129 EGSWDNWKMK 139
           EGSWDNW+ +
Sbjct: 154 EGSWDNWRSR 162

[Close]

BLAST of Carg07888 vs. Swiss-Prot
Match: sp|Q9SCY5|KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.4e-29
Identity = 71/140 (50.71%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDG-LAAPPDSHRGYHTGDPPAELMG 60
           MGNVN RE+ +                     +  DG   APP             ELMG
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPP-------------ELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQGIPTMIT 120
            SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQGIPTMIT
Sbjct: 61  QSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMIT 120

Query: 121 WSHGGKEVAVEGSWDNWKMK 139
           W HGGKE+AVEGSWDNWK +
Sbjct: 121 WCHGGKEIAVEGSWDNWKTR 127

[Close]

BLAST of Carg07888 vs. Swiss-Prot
Match: sp|Q84VQ1|KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-15
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 65  SPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWSHGGK 124
           SP   PSP +F PQVPV PL R +     +  W N S  V D   EQGIPT+ITW+ GG 
Sbjct: 53  SPARSPSPFLFAPQVPVAPLQRANAPPPNNIQW-NQSQRVFDNPPEQGIPTIITWNQGGN 112

Query: 125 EVAVEGSWDNWKMK 139
           +VAVEGSWDNW+ +
Sbjct: 113 DVAVEGSWDNWRSR 125

[Close]

BLAST of Carg07888 vs. TrEMBL
Match: tr|A0A1S3B352|A0A1S3B352_CUCME (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 114/138 (82.61%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDG      XXXXXXXXX     SLPDGLAAPPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDG---NPSXXXXXXXXXGGRRSSLPDGLAAPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPV+PLPRPDEVH++SQSWM+NSSW D+V ++QGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVIPLPRPDEVHSSSQSWMHNSSWFDEVGSDQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. TrEMBL
Match: tr|A0A0A0KH57|A0A0A0KH57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.6e-54
Identity = 113/138 (81.88%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDG      XXXXXXXX      SLPDGL+ PPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDG---NPSXXXXXXXXVGGRRSSLPDGLSVPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPVVPLPRPDEVH++SQSWM+NSSW D+V +EQGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVVPLPRPDEVHSSSQSWMHNSSWFDEVGSEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. TrEMBL
Match: tr|A0A058ZW30|A0A058ZW30_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L00156 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.6e-32
Identity = 78/138 (56.52%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGRED  G                   GS+ D + AP ++  GY     PAELMG 
Sbjct: 1   MGNVNGREDGVG-----SPSGVDEEGGGGGDGSVQDSMGAPDEALVGY---TAPAELMGQ 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP SPRA  SPLMF PQVPV PL RPDE+H +  SWM  SS  +D  +EQGIPTMITW 
Sbjct: 61  SPPHSPRATQSPLMFAPQVPVAPLHRPDEMHGSGPSWMQTSSGYEDACSEQGIPTMITWC 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           +GGKEVAVEGSWDNWK +
Sbjct: 121 YGGKEVAVEGSWDNWKTR 130

[Close]

BLAST of Carg07888 vs. TrEMBL
Match: tr|W9QZA1|W9QZA1_9ROSA (SNF1-related protein kinase regulatory subunit beta-2 OS=Morus notabilis OX=981085 GN=L484_010610 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 80/145 (55.17%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSLPDG---LAAPPDSHRGYHTGDPPAEL 60
           MGNVN RED  G                   G+  DG   +   P +  G+ T    +EL
Sbjct: 1   MGNVNAREDGSG----------------SPSGAEEDGGGSVQEEPMASHGHVTPGGSSEL 60

Query: 61  MGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMI 120
           MG SPP SPRA  SPLMFTPQVPVVPL RPDE H  S SWM  SS  +D+S EQGIPTMI
Sbjct: 61  MGQSPPHSPRATHSPLMFTPQVPVVPLQRPDESHIASSSWMQTSSGFEDMSYEQGIPTMI 120

Query: 121 TWSHGGKEVAVEGSWDNWKMKFVSL 143
           TW +GGKEVAVEGSWDNWK  F  L
Sbjct: 121 TWPYGGKEVAVEGSWDNWKTSFYVL 129

[Close]

BLAST of Carg07888 vs. TrEMBL
Match: tr|B9SA62|B9SA62_RICCO (Snf1-kinase beta subunit, plants, putative OS=Ricinus communis OX=3988 GN=RCOM_0861290 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 96/147 (65.31%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 1   MGNVNGREDEDGXXXXXXXXXXXXXXXXXXXGSL---------PDGLAAPPDSHRGYHTG 60
           MGNVNGR +EDG XXXXXXXXXXXXXXXXXX             DG+  P  S   Y   
Sbjct: 1   MGNVNGRGEEDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTDGVVVPDGSRLAYL-- 60

Query: 61  DPPAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQ 120
            PP ELMG SPP SPRA  SPLMFTPQVPVVPL RPDE+   S SWM  +   +D+  EQ
Sbjct: 61  PPPPELMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQIPSNSWMQTNVGYEDICDEQ 120

Query: 121 GIPTMITWSHGGKEVAVEGSWDNWKMK 139
           GIPTMITWS+GGKEVAVEGSWDNWKM+
Sbjct: 121 GIPTMITWSYGGKEVAVEGSWDNWKMR 145

The following BLAST results are available for this feature:

BLAST of Carg07888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003375.1	1.4e-62	100.00	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima]	[more]
XP_022926790.1	3.5e-61	99.28	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata]	[more]
XP_023517360.1	3.5e-61	99.28	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp...	[more]
XP_008440979.1	2.5e-54	82.61	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis m...	[more]
XP_004134805.1	5.5e-54	81.88	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativu...	[more]

BLAST of Carg07888 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16360.3	3.9e-30	69.77	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.2	1.8e-11	47.14	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

BLAST of Carg07888 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SCY5\|KINB2_ARATH	5.4e-29	50.71	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
sp\|Q84VQ1\|KINB1_ARATH	7.6e-15	54.05	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg07888 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B352\|A0A1S3B352_CUCME	1.6e-54	82.61	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KH57\|A0A0A0KH57_CUCSA	3.6e-54	81.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=4 SV=1	[more]
tr\|A0A058ZW30\|A0A058ZW30_EUCGR	6.6e-32	56.52	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L00156 PE=4 SV...	[more]
tr\|W9QZA1\|W9QZA1_9ROSA	1.6e-30	55.17	SNF1-related protein kinase regulatory subunit beta-2 OS=Morus notabilis OX=9810...	[more]
tr\|B9SA62\|B9SA62_RICCO	1.6e-30	65.31	Snf1-kinase beta subunit, plants, putative OS=Ricinus communis OX=3988 GN=RCOM_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014756	Ig_E-set
IPR030070	KINB2
IPR032640	AMPK1_CBM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07888-RA	Carg07888-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032640	AMP-activated protein kinase, glycogen-binding domain	PFAM	PF16561	AMPK1_CBM	coord: 113..138 e-value: 5.9E-8 score: 32.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR10343	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	coord: 1..138
IPR030070	SNF1-related protein kinase regulatory subunit beta-2	PANTHER	PTHR10343:SF66	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2	coord: 1..138
IPR014756	Immunoglobulin E-set	SUPERFAMILY	SSF81296	E set domains	coord: 111..139

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07888	Carg00512	Silver-seed gourd	carcarB425

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07888	Cucumber (Chinese Long) v3	carcucB0674
Carg07888	Bottle gourd (USVL1VR-Ls)	carlsiB585
Carg07888	Melon (DHL92) v3.5.1	carmeB0643
Carg07888	Melon (DHL92) v3.6.1	carmedB0653
Carg07888	Watermelon (Charleston Gray)	carwcgB0623
Carg07888	Watermelon (97103) v1	carwmB0642
Carg07888	Watermelon (97103) v2	carwmbB0669
Carg07888	Wax gourd	carwgoB0759
Carg07888	Cucumber (Gy14) v2	carcgybB0640
Carg07888	Cucumber (Gy14) v1	carcgyB0714
Carg07888	Cucurbita maxima (Rimu)	carcmaB0907
Carg07888	Cucurbita maxima (Rimu)	carcmaB0912
Carg07888	Cucurbita maxima (Rimu)	carcmaB0914
Carg07888	Cucurbita moschata (Rifu)	carcmoB0886
Carg07888	Cucurbita moschata (Rifu)	carcmoB0888
Carg07888	Cucurbita pepo (Zucchini)	carcpeB0913
Carg07888	Cucurbita pepo (Zucchini)	carcpeB0915
Carg07888	Wild cucumber (PI 183967)	carcpiB0672
Carg07888	Cucumber (Chinese Long) v2	carcuB0663