Carg07887 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07887
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SNF1-related protein kinase regulatory subunit beta-2-like
Location	Cucurbita_argyrosperma_scaffold_066 : 610027 .. 610918 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAATGTCTTGTTCTTGATCAGAATACCCTTGCAGAGATCTGGGAAGGACTTCACGATTGTGAAGGTACTGCCTTCTGGTGTTTACCAGTATAGGTTTATTGCTGATGGACAATGGAGATATGCTCCTGACTTACCTTGGGCTCGAGATGATTCCGGCAATGCTTACAATATCTTGGACTTGCAGGTAAAAACATCTCTTTTTTGCACACCACTGCTTATGAATGGAAGTAGGACAACCTATTACCATAGCTGATTTTACTGTTGCAGGACTATGTCCCAGAAGACATTGAAAGCATTTCTAGCTTCGAACCTCCTCAATCCCCGGAGTCGAGTTACAGCAGTTTGCAGCTTGGATCTGAAGATTTTTCGAAGGAGCCACCATTGGCTCCTCCTCACTTGAAATCCACGTTGCTTGACATGCCTTGCCCATACAATGAGATTTTGCCTCCTTTGTCAAGACCTCAGCATGTAATGCTGAATCATCTTTATATGCAGAAGGAAAGGGGCGGTCCATCTGTCGTGGCACTCGGGATGACTCACCGGTTTCTAGCAAAGTACGTAACTGTTGTCCTCTATAAATCGTTGCAGAGATAATGTAGTATAGGCATATCCTGTGTGAAAGAAATTCAAAATCTAAACCCATTTTTCCTTACTGTAGCTTTATATGGTGTTGATGCCATTTCATTTTAACACTTCTGAATTAACCAGGACGTCTGAATGGATCGTTCTTCAAGACTCTACCTTACATGATGGCATCTCTTTTTGATCTGACATGCATTTTAACCATTTAGCAACCTTTTCCCCATCATTGTCGTAGGATCTTTCGTTTCACTCCCTTTCTACCTATCATGTAGCTTTTGCTAGTGAACCAATCTATTCGGGATGCC

mRNA sequence

ATGCCTAATGTCTTGTTCTTGATCAGAATACCCTTGCAGAGATCTGGGAAGGACTTCACGATTGTGAAGGTACTGCCTTCTGGTGTTTACCAGTATAGGTTTATTGCTGATGGACAATGGAGATATGCTCCTGACTTACCTTGGGCTCGAGATGATTCCGGCAATGCTTACAATATCTTGGACTTGCAGGACTATGTCCCAGAAGACATTGAAAGCATTTCTAGCTTCGAACCTCCTCAATCCCCGGAGTCGAGTTACAGCAGTTTGCAGCTTGGATCTGAAGATTTTTCGAAGGAGCCACCATTGGCTCCTCCTCACTTGAAATCCACGTTGCTTGACATGCCTTGCCCATACAATGAGATTTTGCCTCCTTTGTCAAGACCTCAGCATGTAATGCTGAATCATCTTTATATGCAGAAGGAAAGGGGCGGTCCATCTGTCGTGGCACTCGGGATGACTCACCGGTTTCTAGCAAAGTACGTAACTGTTGTCCTCTATAAATCGTTGCAGAGATAATGTAGTATAGGCATATCCTGTGTGAAAGAAATTCAAAATCTAAACCCATTTTTCCTTACTGTAGCTTTATATGGTGTTGATGCCATTTCATTTTAACACTTCTGAATTAACCAGGACGTCTGAATGGATCGTTCTTCAAGACTCTACCTTACATGATGGCATCTCTTTTTGATCTGACATGCATTTTAACCATTTAGCAACCTTTTCCCCATCATTGTCGTAGGATCTTTCGTTTCACTCCCTTTCTACCTATCATGTAGCTTTTGCTAGTGAACCAATCTATTCGGGATGCC

Coding sequence (CDS)

ATGCCTAATGTCTTGTTCTTGATCAGAATACCCTTGCAGAGATCTGGGAAGGACTTCACGATTGTGAAGGTACTGCCTTCTGGTGTTTACCAGTATAGGTTTATTGCTGATGGACAATGGAGATATGCTCCTGACTTACCTTGGGCTCGAGATGATTCCGGCAATGCTTACAATATCTTGGACTTGCAGGACTATGTCCCAGAAGACATTGAAAGCATTTCTAGCTTCGAACCTCCTCAATCCCCGGAGTCGAGTTACAGCAGTTTGCAGCTTGGATCTGAAGATTTTTCGAAGGAGCCACCATTGGCTCCTCCTCACTTGAAATCCACGTTGCTTGACATGCCTTGCCCATACAATGAGATTTTGCCTCCTTTGTCAAGACCTCAGCATGTAATGCTGAATCATCTTTATATGCAGAAGGAAAGGGGCGGTCCATCTGTCGTGGCACTCGGGATGACTCACCGGTTTCTAGCAAAGTACGTAACTGTTGTCCTCTATAAATCGTTGCAGAGATAA

Protein sequence

MPNVLFLIRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPEDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRPQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR

Homology

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BLAST of Carg07887 vs. NCBI nr
Match: XP_022926790.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 4.0e-88
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWA+DDSGNAYNILDLQDYVP
Sbjct: 138 MKIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWAQDDSGNAYNILDLQDYVP 197

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR
Sbjct: 198 EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 257

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR
Sbjct: 258 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 301

[Close]

BLAST of Carg07887 vs. NCBI nr
Match: XP_023517360.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 4.0e-88
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWA+DDSGNAYNILDLQDYVP
Sbjct: 138 MKIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWAQDDSGNAYNILDLQDYVP 197

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR
Sbjct: 198 EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 257

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR
Sbjct: 258 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 301

[Close]

BLAST of Carg07887 vs. NCBI nr
Match: XP_023003375.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 2.6e-87
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWA+DDSGNAYNILDLQDYVP
Sbjct: 137 MKIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWAQDDSGNAYNILDLQDYVP 196

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR
Sbjct: 197 EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 256

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHVMLNHLYMQKERGGPSVVALGMT+RFLAKYVTVVLYKSLQR
Sbjct: 257 PQHVMLNHLYMQKERGGPSVVALGMTNRFLAKYVTVVLYKSLQR 300

[Close]

BLAST of Carg07887 vs. NCBI nr
Match: XP_022949884.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata])

HSP 1 Score: 320.5 bits (820), Expect = 3.5e-84
Identity = 154/163 (94.48%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           +IPLQRSGKDFTI+KVL SGVYQYRFIADGQWRYAPDLPWA+DD+GNAYNILDLQDYVPE
Sbjct: 135 KIPLQRSGKDFTIMKVLSSGVYQYRFIADGQWRYAPDLPWAQDDAGNAYNILDLQDYVPE 194

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLK+TLLDMP PYNEILPP+SRP
Sbjct: 195 DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKTTLLDMPSPYNEILPPISRP 254

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR
Sbjct: 255 QHVVLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 297

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BLAST of Carg07887 vs. NCBI nr
Match: XP_004134805.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN49035.1 hypothetical protein Csa_6G511020 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 6.0e-84
Identity = 151/164 (92.07%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDFTI+KVLPSGVYQYRFIADGQWRYAPDLPWA+DD+GNAYNILDLQDYVP
Sbjct: 134 MKIPLQRSGKDFTIMKVLPSGVYQYRFIADGQWRYAPDLPWAQDDAGNAYNILDLQDYVP 193

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSY+SLQL ++D+SKEPPLAPPHLK+TLLDMPCPYNEILPP+SR
Sbjct: 194 EDIESISSFEPPQSPESSYNSLQLVADDYSKEPPLAPPHLKTTLLDMPCPYNEILPPISR 253

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHV+LNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR
Sbjct: 254 PQHVVLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 297

[Close]

BLAST of Carg07887 vs. TAIR10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-70
Identity = 126/163 (77.30%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           R  LQRSGKDFTI+KVLPSGVY+YRFI DGQWR+AP+LP ARDD+GN +NILDLQDYVPE
Sbjct: 99  RSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPE 158

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           DI+SIS FEPPQSPE+SYS+L LG+ED+SKEPP+ PPHL+ TLL++P    +I  PL RP
Sbjct: 159 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 218

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQK + GPSVVALG THRFLAKYVTVVLYKSLQR
Sbjct: 219 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]

BLAST of Carg07887 vs. TAIR10
Match: AT5G21170.2 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-39
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           R  LQ+SGKD +I+ VLPSG+Y Y+ I DG+ +Y PDLP+  D+ GN  NILD+ ++VPE
Sbjct: 162 RKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPE 221

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           + ESI  FE P SP+ SY      +ED++KEP   PP L  TLL       E     ++P
Sbjct: 222 NPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETAIATKP 281

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNH+++++     S+VALG+THRF +KY+TVVLYK L R
Sbjct: 282 QHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320

[Close]

BLAST of Carg07887 vs. TAIR10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 67  PEDIE--SISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPP 126
           P+D E  ++  FE P SP SSY+++   +ED +++PP  PPHL+ +LL      N+    
Sbjct: 6   PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLG-----NQGSME 65

Query: 127 LS-RPQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           L+  PQ+V+LNHLY++      SVVALG +HRF  K+VTVV+YK +QR
Sbjct: 66  LAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108

[Close]

BLAST of Carg07887 vs. TAIR10
Match: AT3G01510.1 (like SEX4 1)

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 19/51 (37.25%), Postives = 27/51 (52.94%), Query Frame = 0


Query: 14  RSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQD 65
           + G  F     L  G Y Y++I +G WR++   P  RDD GN  NI+ + D
Sbjct: 488 KGGPRFETEVRLTQGKYYYKYIINGDWRHSATSPTERDDRGNTNNIIVVGD 538

[Close]

BLAST of Carg07887 vs. Swiss-Prot
Match: sp|Q9SCY5|KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.7e-69
Identity = 126/163 (77.30%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           R  LQRSGKDFTI+KVLPSGVY+YRFI DGQWR+AP+LP ARDD+GN +NILDLQDYVPE
Sbjct: 127 RSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPE 186

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           DI+SIS FEPPQSPE+SYS+L LG+ED+SKEPP+ PPHL+ TLL++P    +I  PL RP
Sbjct: 187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 246

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQK + GPSVVALG THRFLAKYVTVVLYKSLQR
Sbjct: 247 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]

BLAST of Carg07887 vs. Swiss-Prot
Match: sp|Q84VQ1|KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.8e-38
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           R  LQ+SGKD +I+ VLPSG+Y Y+ I DG+ +Y PDLP+  D+ GN  NILD+ ++VPE
Sbjct: 125 RKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPE 184

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           + ESI  FE P SP+ SY      +ED++KEP   PP L  TLL       E     ++P
Sbjct: 185 NPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETAIATKP 244

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNH+++++     S+VALG+THRF +KY+TVVLYK L R
Sbjct: 245 QHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]

BLAST of Carg07887 vs. Swiss-Prot
Match: sp|Q9QZH4|AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-18
Identity = 60/173 (34.68%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQ--DYV 68
           +IPL +S  DF  +  LP G +QY+F  DGQW + P  P      G   N++ ++  D+ 
Sbjct: 101 KIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFE 160

Query: 69  PEDIESISSFEPPQSPESSYSSLQLG----------SEDFSKEPPLAPPHLKSTLLDMPC 128
             D   + S E  ++     SS   G          SE+  K PP+ PPHL   +L+   
Sbjct: 161 VFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDT 220

Query: 129 PYNEILPPLSRPQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSL 170
             +     L  P HVMLNHLY    +   SV+ L  THR+  KYVT +LYK +
Sbjct: 221 NISCDPALLPEPNHVMLNHLYALSTK--DSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of Carg07887 vs. Swiss-Prot
Match: sp|O43741|AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-18
Identity = 60/173 (34.68%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQ--DYV 68
           +IPL +S  DF  +  LP G +QY+F  DGQW + P  P      G   N++ ++  D+ 
Sbjct: 102 KIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFE 161

Query: 69  PEDIESISSFEPPQSPESSYSSLQLG----------SEDFSKEPPLAPPHLKSTLLDMPC 128
             D   + S E  ++     SS   G          SE+  K PP+ PPHL   +L+   
Sbjct: 162 VFDALKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDT 221

Query: 129 PYNEILPPLSRPQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSL 170
             +     L  P HVMLNHLY    +   SV+ L  THR+  KYVT +LYK +
Sbjct: 222 NISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSATHRYKKKYVTTLLYKPI 272

[Close]

BLAST of Carg07887 vs. Swiss-Prot
Match: sp|Q6PAM0|AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-18
Identity = 60/173 (34.68%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQ--DYV 68
           +IPL +S  DF  +  LP G +QY+F  DGQW + P  P      G   N++ ++  D+ 
Sbjct: 101 KIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFE 160

Query: 69  PEDIESISSFEPPQSPESSYSSLQLG----------SEDFSKEPPLAPPHLKSTLLDMPC 128
             D   + S E  ++     SS   G          SE+  K PP+ PPHL   +L+   
Sbjct: 161 VFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDT 220

Query: 129 PYNEILPPLSRPQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSL 170
             +     L  P HVMLNHLY    +   SV+ L  THR+  KYVT +LYK +
Sbjct: 221 NISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of Carg07887 vs. TrEMBL
Match: tr|A0A0A0KH57|A0A0A0KH57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.0e-84
Identity = 151/164 (92.07%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDFTI+KVLPSGVYQYRFIADGQWRYAPDLPWA+DD+GNAYNILDLQDYVP
Sbjct: 134 MKIPLQRSGKDFTIMKVLPSGVYQYRFIADGQWRYAPDLPWAQDDAGNAYNILDLQDYVP 193

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSY+SLQL ++D+SKEPPLAPPHLK+TLLDMPCPYNEILPP+SR
Sbjct: 194 EDIESISSFEPPQSPESSYNSLQLVADDYSKEPPLAPPHLKTTLLDMPCPYNEILPPISR 253

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHV+LNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR
Sbjct: 254 PQHVVLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 297

[Close]

BLAST of Carg07887 vs. TrEMBL
Match: tr|A0A1S3B352|A0A1S3B352_CUCME (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 9.8e-83
Identity = 149/164 (90.85%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 8   IRIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVP 67
           ++IPLQRSGKDF I+KVLPSGVYQYRFIADGQWRYAPDLPWA+DD+GNAYNILDLQDYVP
Sbjct: 134 MKIPLQRSGKDFAIMKVLPSGVYQYRFIADGQWRYAPDLPWAQDDAGNAYNILDLQDYVP 193

Query: 68  EDIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSR 127
           EDIESISSFEPPQSPESSY+SLQL ++D+SKEPPLAPPHLK+TLLDMPCPYNEILPPLSR
Sbjct: 194 EDIESISSFEPPQSPESSYNSLQLVADDYSKEPPLAPPHLKTTLLDMPCPYNEILPPLSR 253

Query: 128 PQHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           PQHV+LNHLYMQKERGGPSVVALGM+HRFL KYVTVVLYKSLQR
Sbjct: 254 PQHVVLNHLYMQKERGGPSVVALGMSHRFLRKYVTVVLYKSLQR 297

[Close]

BLAST of Carg07887 vs. TrEMBL
Match: tr|A0A2C9VE57|A0A2C9VE57_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G069900 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.4e-74
Identity = 133/163 (81.60%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           RIPLQRSGKD++I+KVLPSGVYQYRFI DGQWR+ PDLPWA+DD+GNAYNILDLQDYVPE
Sbjct: 139 RIPLQRSGKDYSIMKVLPSGVYQYRFIVDGQWRHIPDLPWAQDDNGNAYNILDLQDYVPE 198

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           D+ESISSFEPPQSPESSY+++QLG++DF+KEPP  PPHL+ TLL+MP  Y EI PPLSRP
Sbjct: 199 DLESISSFEPPQSPESSYNNMQLGNDDFAKEPPFVPPHLQMTLLNMPSSYMEIPPPLSRP 258

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQK +GGP+VVALG THRFLAKYVTVVLYKS+QR
Sbjct: 259 QHVVLNHLYMQKGKGGPAVVALGSTHRFLAKYVTVVLYKSIQR 301

[Close]

BLAST of Carg07887 vs. TrEMBL
Match: tr|A0A067KGY8|A0A067KGY8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08944 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           RIPLQRSGKDFTI+KVLPSGVYQYRFI D QW+Y PDLPWA+DDSGNAYN+LDLQDYVPE
Sbjct: 140 RIPLQRSGKDFTIMKVLPSGVYQYRFIVDRQWKYIPDLPWAQDDSGNAYNVLDLQDYVPE 199

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           D+ESISSFEPPQSPESSY++LQLG++D++KEPP  PPHL+ TLL+MP  Y EI PPLSRP
Sbjct: 200 DLESISSFEPPQSPESSYNNLQLGNDDYAKEPPFVPPHLQMTLLNMPSSYMEIPPPLSRP 259

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQK +G P+VVALG THRFLAKYVTVVLYKSLQR
Sbjct: 260 QHVVLNHLYMQKGKGSPAVVALGSTHRFLAKYVTVVLYKSLQR 302

[Close]

BLAST of Carg07887 vs. TrEMBL
Match: tr|A0A2R6QM04|A0A2R6QM04_ACTCH (SNF1-related protein kinase regulatory subunit beta-2 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17535 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-73
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 9   RIPLQRSGKDFTIVKVLPSGVYQYRFIADGQWRYAPDLPWARDDSGNAYNILDLQDYVPE 68
           R PLQRSGKDFT++KVLPSGVYQYRFI DGQWRYAPD+PWA+DD+GNAYNILDLQDYVPE
Sbjct: 126 RKPLQRSGKDFTLMKVLPSGVYQYRFIVDGQWRYAPDMPWAQDDTGNAYNILDLQDYVPE 185

Query: 69  DIESISSFEPPQSPESSYSSLQLGSEDFSKEPPLAPPHLKSTLLDMPCPYNEILPPLSRP 128
           D+ESIS FE PQSPESSY++LQLGSED++KEPPL PPHL++TLL++P  Y EI PPLSRP
Sbjct: 186 DVESISGFESPQSPESSYNNLQLGSEDYAKEPPLVPPHLQTTLLNVPSSYMEIPPPLSRP 245

Query: 129 QHVMLNHLYMQKERGGPSVVALGMTHRFLAKYVTVVLYKSLQR 172
           QHV+LNHLYMQK R  PSVVALG THRFLAKYVTVVLYKS+QR
Sbjct: 246 QHVVLNHLYMQKGRSSPSVVALGSTHRFLAKYVTVVLYKSIQR 288

The following BLAST results are available for this feature:

BLAST of Carg07887 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926790.1	4.0e-88	98.17	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata]	[more]
XP_023517360.1	4.0e-88	98.17	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp...	[more]
XP_023003375.1	2.6e-87	97.56	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima]	[more]
XP_022949884.1	3.5e-84	94.48	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata]	[more]
XP_004134805.1	6.0e-84	92.07	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativu...	[more]

BLAST of Carg07887 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16360.3	2.1e-70	77.30	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.2	3.2e-39	49.69	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT2G28060.1	1.3e-16	45.37	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT3G01510.1	1.2e-04	37.25	like SEX4 1	[more]

BLAST of Carg07887 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SCY5\|KINB2_ARATH	3.7e-69	77.30	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
sp\|Q84VQ1\|KINB1_ARATH	5.8e-38	49.69	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9QZH4\|AAKB2_RAT	2.3e-18	34.68	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=...	[more]
sp\|O43741\|AAKB2_HUMAN	3.9e-18	34.68	5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2...	[more]
sp\|Q6PAM0\|AAKB2_MOUSE	3.9e-18	34.68	5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab...	[more]

BLAST of Carg07887 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KH57\|A0A0A0KH57_CUCSA	4.0e-84	92.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=4 SV=1	[more]
tr\|A0A1S3B352\|A0A1S3B352_CUCME	9.8e-83	90.85	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36...	[more]
tr\|A0A2C9VE57\|A0A2C9VE57_MANES	6.4e-74	81.60	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G069900 PE=4 SV=...	[more]
tr\|A0A067KGY8\|A0A067KGY8_JATCU	1.1e-73	82.21	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08944 PE=4 SV=1	[more]
tr\|A0A2R6QM04\|A0A2R6QM04_ACTCH	1.9e-73	82.21	SNF1-related protein kinase regulatory subunit beta-2 like OS=Actinidia chinensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR037256	ASC_dom_sf
IPR014756	Ig_E-set
IPR030070	KINB2
IPR032640	AMPK1_CBM
IPR013783	Ig-like_fold
IPR006828	ASC_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07887-RA	Carg07887-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006828	Association with the SNF1 complex (ASC) domain	SMART	SM01010	AMPKBI_2	coord: 79..169 e-value: 4.9E-21 score: 85.9
IPR006828	Association with the SNF1 complex (ASC) domain	PFAM	PF04739	AMPKBI	coord: 97..167 e-value: 2.0E-18 score: 66.3
IPR013783	Immunoglobulin-like fold	GENE3D	G3DSA:2.60.40.10		coord: 6..66 e-value: 9.8E-13 score: 49.9
IPR032640	AMP-activated protein kinase, glycogen-binding domain	PFAM	PF16561	AMPK1_CBM	coord: 9..63 e-value: 3.5E-17 score: 62.3
None	No IPR available	GENE3D	G3DSA:3.30.160.760		coord: 75..169 e-value: 1.4E-22 score: 81.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..98
None	No IPR available	PANTHER	PTHR10343	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	coord: 9..171
None	No IPR available	CDD	cd02859	E_set_AMPKbeta_like_N	coord: 9..61 e-value: 1.19956E-16 score: 70.3204
IPR030070	SNF1-related protein kinase regulatory subunit beta-2	PANTHER	PTHR10343:SF66	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2	coord: 9..171
IPR014756	Immunoglobulin E-set	SUPERFAMILY	SSF81296	E set domains	coord: 9..69
IPR037256	ASC domain superfamily	SUPERFAMILY	SSF160219	AMPKBI-like	coord: 66..168

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07887	Cla014387	Watermelon (97103) v1	carwmB0642
Carg07887	Csa6G511020	Cucumber (Chinese Long) v2	carcuB0663
Carg07887	MELO3C008009	Melon (DHL92) v3.5.1	carmeB0643
Carg07887	ClCG01G021250	Watermelon (Charleston Gray)	carwcgB0623
Carg07887	CSPI06G32810	Wild cucumber (PI 183967)	carcpiB0672
Carg07887	Cucsa.044600	Cucumber (Gy14) v1	carcgyB0714
Carg07887	CmoCh07G003530	Cucurbita moschata (Rifu)	carcmoB0888
Carg07887	CmoCh03G006170	Cucurbita moschata (Rifu)	carcmoB0886
Carg07887	Lsi01G004990	Bottle gourd (USVL1VR-Ls)	carlsiB585
Carg07887	Cp4.1LG19g08350	Cucurbita pepo (Zucchini)	carcpeB0915
Carg07887	Cp4.1LG10g10230	Cucurbita pepo (Zucchini)	carcpeB0913
Carg07887	CsGy6G032430	Cucumber (Gy14) v2	carcgybB0640
Carg07887	MELO3C008009.2	Melon (DHL92) v3.6.1	carmedB0653
Carg07887	CsaV3_6G048260	Cucumber (Chinese Long) v3	carcucB0674
Carg07887	Cla97C01G020820	Watermelon (97103) v2	carwmbB0669

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07887	Carg00511	Silver-seed gourd	carcarB425

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07887	Cucurbita maxima (Rimu)	carcmaB0907
Carg07887	Cucurbita maxima (Rimu)	carcmaB0912
Carg07887	Cucurbita maxima (Rimu)	carcmaB0914
Carg07887	Wax gourd	carwgoB0759