Carg07746 (gene) Silver-seed gourd

Overview
NameCarg07746
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_066 : 24180 .. 24902 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCGACCACGATTATCGTACTTTCCGGAAGTACGGAGCCCGCCATAAGATCATGGTCTCTGCAATTTTCAGTCTATTCGTCGTGGTTATGTTCATCCTCTTCCTCCACTTTTACCTCAGATATCTCCGACGGCGCCGACGAGAAGCCAGATTAATTAGTCTCGACCAGCAGATTTCACGAGTCGATCGAGAGAATCACACGGCGGCGCCGCTGCCAAAGGCCGGCCTGGACCCTGTCTTTATAGCTAGAGTTCTGCCGGAATCTATCCACAAGCAAGCCGATCATCAAGGCGAAATTGTAGAGTGCTCGATTTGCTTGAGCAACATCGAAGAGAAAGCCACTGTCAGGATTCTCCCCAATTGCAAGCACGTATTCCATGTGGGGTGCATCGATATGTGGCTTTTTTCCAATACAACCTGTCCTGTCTGCCGAACAGCGGTGGAGCCGATAGTTCCGTCGGCCGAGAATGGCGAGGTTCCAACGGCTCCGCCGTTGGCAGAGGAGCAATCCAGCTCTATGATTAGCTCCTTTAGAAGGACGATAAGCAGAGAGAGGTCTCAGGGAGTTCAGCCGACAGCTCCGCCGCTGACAGAGGAGCAATCAAGTTCTCGGCTGAGCTCGTTTAGAAGAATAATGAGTAGAGAGAGAGAGAGATCGTTAAGGGTTCACAGTTGTGGAGAAGGATCAGTTCGATCTGCAGATTTAGAGAGGCCATGA

mRNA sequence

ATGGGTTCCGACCACGATTATCGTACTTTCCGGAAGTACGGAGCCCGCCATAAGATCATGGTCTCTGCAATTTTCAGTCTATTCGTCGTGGTTATGTTCATCCTCTTCCTCCACTTTTACCTCAGATATCTCCGACGGCGCCGACGAGAAGCCAGATTAATTAGTCTCGACCAGCAGATTTCACGAGTCGATCGAGAGAATCACACGGCGGCGCCGCTGCCAAAGGCCGGCCTGGACCCTGTCTTTATAGCTAGAGTTCTGCCGGAATCTATCCACAAGCAAGCCGATCATCAAGGCGAAATTGTAGAGTGCTCGATTTGCTTGAGCAACATCGAAGAGAAAGCCACTGTCAGGATTCTCCCCAATTGCAAGCACGTATTCCATGTGGGGTGCATCGATATGTGGCTTTTTTCCAATACAACCTGTCCTGTCTGCCGAACAGCGGTGGAGCCGATAGTTCCGTCGGCCGAGAATGGCGAGGTTCCAACGGCTCCGCCGTTGGCAGAGGAGCAATCCAGCTCTATGATTAGCTCCTTTAGAAGGACGATAAGCAGAGAGAGGTCTCAGGGAGTTCAGCCGACAGCTCCGCCGCTGACAGAGGAGCAATCAAGTTCTCGGCTGAGCTCGTTTAGAAGAATAATGAGTAGAGAGAGAGAGAGATCGTTAAGGGTTCACAGTTGTGGAGAAGGATCAGTTCGATCTGCAGATTTAGAGAGGCCATGA

Coding sequence (CDS)

ATGGGTTCCGACCACGATTATCGTACTTTCCGGAAGTACGGAGCCCGCCATAAGATCATGGTCTCTGCAATTTTCAGTCTATTCGTCGTGGTTATGTTCATCCTCTTCCTCCACTTTTACCTCAGATATCTCCGACGGCGCCGACGAGAAGCCAGATTAATTAGTCTCGACCAGCAGATTTCACGAGTCGATCGAGAGAATCACACGGCGGCGCCGCTGCCAAAGGCCGGCCTGGACCCTGTCTTTATAGCTAGAGTTCTGCCGGAATCTATCCACAAGCAAGCCGATCATCAAGGCGAAATTGTAGAGTGCTCGATTTGCTTGAGCAACATCGAAGAGAAAGCCACTGTCAGGATTCTCCCCAATTGCAAGCACGTATTCCATGTGGGGTGCATCGATATGTGGCTTTTTTCCAATACAACCTGTCCTGTCTGCCGAACAGCGGTGGAGCCGATAGTTCCGTCGGCCGAGAATGGCGAGGTTCCAACGGCTCCGCCGTTGGCAGAGGAGCAATCCAGCTCTATGATTAGCTCCTTTAGAAGGACGATAAGCAGAGAGAGGTCTCAGGGAGTTCAGCCGACAGCTCCGCCGCTGACAGAGGAGCAATCAAGTTCTCGGCTGAGCTCGTTTAGAAGAATAATGAGTAGAGAGAGAGAGAGATCGTTAAGGGTTCACAGTTGTGGAGAAGGATCAGTTCGATCTGCAGATTTAGAGAGGCCATGA

Protein sequence

MGSDHDYRTFRKYGARHKIMVSAIFSLFVVVMFILFLHFYLRYLRRRRREARLISLDQQISRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFRRTISRERSQGVQPTAPPLTEEQSSSRLSSFRRIMSRERERSLRVHSCGEGSVRSADLERP
Homology
[Close]
BLAST of Carg07746 vs. NCBI nr
Match: XP_022926420.1 (E3 ubiquitin-protein ligase ATL41-like [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 2.8e-87
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI
Sbjct: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60

Query: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL 120
           SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL
Sbjct: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL 120

Query: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180
           PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR
Sbjct: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180

Query: 181 RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLERP 240
           RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLERP
Sbjct: 181 RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLERP 240

[Close]
BLAST of Carg07746 vs. NCBI nr
Match: XP_023517839.1 (E3 ubiquitin-protein ligase ATL41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 2.0e-85
Identity = 236/239 (98.74%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSDHDYRT R+YGARHKIMVSAI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI
Sbjct: 1   MGSDHDYRTLRRYGARHKIMVSAIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60

Query: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL 120
           SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL
Sbjct: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL 120

Query: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180
           PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR
Sbjct: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180

Query: 181 RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER 240
           RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER
Sbjct: 181 RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER 239

[Close]
BLAST of Carg07746 vs. NCBI nr
Match: XP_023004110.1 (E3 ubiquitin-protein ligase ATL41-like [Cucurbita maxima])

HSP 1 Score: 323.9 bits (829), Expect = 4.5e-85
Identity = 229/239 (95.82%), Postives = 231/239 (96.65%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSDHDYRTFRKYGARHKIMVSAI XXXXXXXXXXXXXXXXXXXXXXXXX      DQQI
Sbjct: 1   MGSDHDYRTFRKYGARHKIMVSAIFXXXXXXXXXXXXXXXXXXXXXXXXXAGLISLDQQI 60

Query: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRIL 120
           SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADH GEIVECSICLSNIEEKA+VRIL
Sbjct: 61  SRVDRENHTAAPLPKAGLDPVFIARVLPESIHKQADHHGEIVECSICLSNIEEKASVRIL 120

Query: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180
           PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR
Sbjct: 121 PNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISSFR 180

Query: 181 RTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER 240
           RTISR+RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER
Sbjct: 181 RTISRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLER 239

[Close]
BLAST of Carg07746 vs. NCBI nr
Match: XP_023544672.1 (E3 ubiquitin-protein ligase ATL41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 195/241 (80.91%), Postives = 207/241 (85.89%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSD +    RK+ ARHKIM+SAI XXXXXXXXXXXXXXXXXXXXXXXXXXX    + QI
Sbjct: 1   MGSDDEDHHLRKFQARHKIMISAIFXXXXXXXXXXXXXXXXXXXXXXXXXXXLINLEHQI 60

Query: 61  SRVDRENHTA--APLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVR 120
           SR DR+NHTA  AP PKAGLDPV IA++L ESIHKQADH GEIVECSICLSNIEEKATVR
Sbjct: 61  SRADRQNHTAATAPAPKAGLDPVLIAKLLQESIHKQADHHGEIVECSICLSNIEEKATVR 120

Query: 121 ILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSSMISS 180
           ILPNCKH+FHV CIDMWLFSNTTCPVCRT VEPIV + E+GE PTAPPL EEQS S  SS
Sbjct: 121 ILPNCKHIFHVECIDMWLFSNTTCPVCRTGVEPIVTATEHGEAPTAPPLEEEQSGSRFSS 180

Query: 181 FRRTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSADLE 240
           FRRT+SRER    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVHSCGEGSVR AD+E
Sbjct: 181 FRRTMSRERSQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRVHSCGEGSVRPADME 240

[Close]
BLAST of Carg07746 vs. NCBI nr
Match: XP_022978748.1 (E3 ubiquitin-protein ligase ATL41-like [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 5.7e-64
Identity = 192/245 (78.37%), Postives = 205/245 (83.67%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSD +    RK+ +RHKI++SAI   XXXXXXXXXXXXXXXXXXXXXXXXXX   + QI
Sbjct: 12  MGSDDEDHHLRKFQSRHKILISAIFSLXXXXXXXXXXXXXXXXXXXXXXXXXXINLEHQI 71

Query: 61  SRVDRENHTA------APLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEK 120
           SR DR+NHTA      AP PKAGLDPV IA++L ESIHKQADH GEIVECSICLSNIEEK
Sbjct: 72  SRADRQNHTAATAAGTAPAPKAGLDPVLIAKLLQESIHKQADHHGEIVECSICLSNIEEK 131

Query: 121 ATVRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEVPTAPPLAEEQSSS 180
           ATVRILPNCKH+FHV CIDMWLFSNTTCPVCRTAVEP V + E+GE PTAPPL EEQS  
Sbjct: 132 ATVRILPNCKHIFHVECIDMWLFSNTTCPVCRTAVEPTVTATEHGEAPTAPPLEEEQSGF 191

Query: 181 MISSFRRTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRS 240
             SSFRRT+SRER    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVHSCGEGSVR 
Sbjct: 192 RFSSFRRTMSRERSQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRVHSCGEGSVRP 251

[Close]
BLAST of Carg07746 vs. TAIR10
Match: AT2G42350.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-21
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 0 

Query: 74  PKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCID 133
           PK GLD + IA +    +  + D  G   EC++CLS +EEK   R+LPNCKHVFHV C+D
Sbjct: 72  PKRGLDSLVIASLPTFVVGIKNDVAG--TECAVCLSLLEEKDNARMLPNCKHVFHVSCVD 131

Query: 134 MWLFSNTTCPVCRTAVEP----IVPSAENGEV-PTAPPL--------AEEQSSSMISSFR 188
            WL + +TCPVCRT  EP    + P    G V   APPL            S S + SFR
Sbjct: 132 TWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRLDSFR 191

[Close]
BLAST of Carg07746 vs. TAIR10
Match: AT2G42360.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-18
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 0 

Query: 73  LPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCI 132
           +PK GL+P  IA +   ++           EC++CLS ++E+   R LPNCKH+FHV C+
Sbjct: 77  MPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCV 136

Query: 133 DMWLFSNTTCPVCRTAVEP---IVPSAENGEVPTAPPLAEE------------------- 188
           D WL + +TCPV RT VEP          G V TAP L  E                   
Sbjct: 137 DTWLTTCSTCPVXRTEVEPRPRXXXXXREGPVGTAPQLLVETRLNLTVEAASSSSSDNKT 196

[Close]
BLAST of Carg07746 vs. TAIR10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 48/107 (44.86%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 77  GLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCIDMWL 136
           GLDP  I + LP        H+ + +EC++CLS  EE  T R+LPNC+H FHV CIDMW 
Sbjct: 94  GLDPNVI-KSLPVFTFSDETHK-DPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWF 153

Query: 137 FSNTTCPVCRTAVEPI-----VPSAENGEVPTA----PPLAEEQSSS 175
            S++TCP+CR+ VE +       +A   EV  A    P L  E SSS
Sbjct: 154 HSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSS 198

[Close]
BLAST of Carg07746 vs. TAIR10
Match: AT3G62690.1 (AtL5)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 78  LDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCIDMWLF 137
           LDP  + ++ P  ++    H+  + ECS+CLS  EE    R+LP C HVFHV CID W  
Sbjct: 88  LDPTVLEKI-PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR 147

Query: 138 SNTTCPVCRTAVEPIVPSAENGEV----PTAPPLAEEQS 173
           S ++CP+CR  V+P  P  E   V    P+  P+ + ++
Sbjct: 148 SRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEA 185

[Close]
BLAST of Carg07746 vs. TAIR10
Match: AT2G35420.1 (RING/U-box superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 68  HTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVF 127
           H A P    GLDP FI R  P   +  A  +    EC+ICLS   ++ TVR++  C+H F
Sbjct: 68  HVATPPENTGLDP-FIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPF 127

Query: 128 HVGCIDMWLFSNTTCPVCRTAVEP 152
           H  CID+W   + TCPVCR  ++P
Sbjct: 128 HSNCIDLWFELHKTCPVCRCELDP 150

[Close]
BLAST of Carg07746 vs. Swiss-Prot
Match: sp|Q9SLC4|ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-20
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 0 

Query: 74  PKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCID 133
           PK GLD + IA +    +  + D  G   EC++CLS +EEK   R+LPNCKHVFHV C+D
Sbjct: 72  PKRGLDSLVIASLPTFVVGIKNDVAG--TECAVCLSLLEEKDNARMLPNCKHVFHVSCVD 131

Query: 134 MWLFSNTTCPVCRTAVEP----IVPSAENGEV-PTAPPL--------AEEQSSSMISSFR 188
            WL + +TCPVCRT  EP    + P    G V   APPL            S S + SFR
Sbjct: 132 TWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRLDSFR 191

[Close]
BLAST of Carg07746 vs. Swiss-Prot
Match: sp|Q9SLC3|ATL41_ARATH (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-16
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 0 

Query: 73  LPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCI 132
           +PK GL+P  IA +   ++           EC++CLS ++E+   R LPNCKH+FHV C+
Sbjct: 77  MPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCV 136

Query: 133 DMWLFSNTTCPVCRTAVEP---IVPSAENGEVPTAPPLAEE------------------- 188
           D WL + +TCPV RT VEP          G V TAP L  E                   
Sbjct: 137 DTWLTTCSTCPVXRTEVEPRPRXXXXXREGPVGTAPQLLVETRLNLTVEAASSSSSDNKT 196

[Close]
BLAST of Carg07746 vs. Swiss-Prot
Match: sp|Q8L9T5|ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-15
Identity = 48/107 (44.86%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 77  GLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCIDMWL 136
           GLDP  I + LP        H+ + +EC++CLS  EE  T R+LPNC+H FHV CIDMW 
Sbjct: 94  GLDPNVI-KSLPVFTFSDETHK-DPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWF 153

Query: 137 FSNTTCPVCRTAVEPI-----VPSAENGEVPTA----PPLAEEQSSS 175
            S++TCP+CR+ VE +       +A   EV  A    P L  E SSS
Sbjct: 154 HSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSS 198

[Close]
BLAST of Carg07746 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-15
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 78  LDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVFHVGCIDMWLF 137
           LDP  + ++ P  ++    H+  + ECS+CLS  EE    R+LP C HVFHV CID W  
Sbjct: 88  LDPTVLEKI-PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR 147

Query: 138 SNTTCPVCRTAVEPIVPSAENGEV----PTAPPLAEEQS 173
           S ++CP+CR  V+P  P  E   V    P+  P+ + ++
Sbjct: 148 SRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEA 185

[Close]
BLAST of Carg07746 vs. Swiss-Prot
Match: sp|Q6NKR1|ATL28_ARATH (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-14
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 68  HTAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKATVRILPNCKHVF 127
           H A P    GLDP FI R  P   +  A  +    EC+ICLS   ++ TVR++  C+H F
Sbjct: 68  HVATPPENTGLDP-FIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPF 127

Query: 128 HVGCIDMWLFSNTTCPVCRTAVEP 152
           H  CID+W   + TCPVCR  ++P
Sbjct: 128 HSNCIDLWFELHKTCPVCRCELDP 150

[Close]
BLAST of Carg07746 vs. TrEMBL
Match: tr|A0A1S3B099|A0A1S3B099_CUCME (E3 ubiquitin-protein ligase ATL41-like OS=Cucumis melo OX=3656 GN=LOC103484472 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 196/244 (80.33%), Postives = 210/244 (86.07%), Query Frame = 0 

Query: 1   MGSDHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQI 60
           MGSD +    RK+G RHK+MVSAI XXXXXXXXXXXXXXXXXXXXXXXXXXX    +QQI
Sbjct: 1   MGSDDEDHHLRKFGTRHKVMVSAIFXXXXXXXXXXXXXXXXXXXXXXXXXXXLINLEQQI 60

Query: 61  SRVDRENHTAAPL----PKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKAT 120
           SR +R+ HTA+      PKAGLDP+ IARVLPESI KQADH+GEIVECSICLSNIEEKAT
Sbjct: 61  SRAERQIHTASATATAPPKAGLDPLLIARVLPESIFKQADHRGEIVECSICLSNIEEKAT 120

Query: 121 VRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSA-ENGEVPTAPPLAEEQSSSM 180
           VRILPNCKH+FHV CIDMWLFSNTTCPVCRTAVEPIV +A E+GEVPTAPPL EEQS S 
Sbjct: 121 VRILPNCKHIFHVECIDMWLFSNTTCPVCRTAVEPIVIAATEHGEVPTAPPLVEEQSGSR 180

Query: 181 ISSFRRTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRSA 240
           +SSFRRT+SRER     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGE SVRS 
Sbjct: 181 LSSFRRTMSRERSQTVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEASVRSG 240

[Close]
BLAST of Carg07746 vs. TrEMBL
Match: tr|A0A0A0KHT2|A0A0A0KHT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518350 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.3e-63
Identity = 197/245 (80.41%), Postives = 208/245 (84.90%), Query Frame = 0 

Query: 1   MGS-DHDYRTFRKYGARHKIMVSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQ 60
           MGS D D+   RK+G RHKIMVSAI XXXXXXXXXXXXXXXXXXXXXXXXXXX    +QQ
Sbjct: 1   MGSDDEDHHHLRKFGTRHKIMVSAIFXXXXXXXXXXXXXXXXXXXXXXXXXXXLISLEQQ 60

Query: 61  ISRVDRENH----TAAPLPKAGLDPVFIARVLPESIHKQADHQGEIVECSICLSNIEEKA 120
           ISR +R+ H    TAA  PKAGLDPV IARVLPESI  QADH+GE+VECSICLSNIEEKA
Sbjct: 61  ISRAERQIHTASATAAMPPKAGLDPVLIARVLPESIFMQADHRGEVVECSICLSNIEEKA 120

Query: 121 TVRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSA-ENGEVPTAPPLAEEQSSS 180
           TVRILPNCKH+FHV CIDMWLFSNTTCPVCRTAVEPIV +A E+GEVPTAPPL EE S S
Sbjct: 121 TVRILPNCKHIFHVECIDMWLFSNTTCPVCRTAVEPIVIAATEHGEVPTAPPLVEEHSGS 180

Query: 181 MISSFRRTISRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEGSVRS 240
             SSFRRT+SRER     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGE SVRS
Sbjct: 181 RFSSFRRTLSRERSQTVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVHSCGEASVRS 240

[Close]
BLAST of Carg07746 vs. TrEMBL
Match: tr|A0A2C9U561|A0A2C9U561_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G052900 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 72/141 (51.06%), Postives = 89/141 (63.12%), Query Frame = 0 

Query: 58  QQISRVDRENHTAAPLPKAGLDPVFIARVLPESI----HKQADHQGEIVECSICLSNIEE 117
           +QI+  D E++     PK GLDP+ IA   P +      ++ DH GE +ECS+CL  I E
Sbjct: 59  RQIAPADMESNYTIEPPKVGLDPLVIASFPPVAYKPTNQQELDH-GEPMECSVCLGTIVE 118

Query: 118 KATVRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPSAENGEV-------PTAPP 177
            A VR+LPNCKH+FHV CIDMWL SNTTCP+CRT  EP VP  E  EV       P+APP
Sbjct: 119 DAMVRVLPNCKHMFHVECIDMWLGSNTTCPICRTVAEPRVP-PEGSEVQVXXXXXPSAPP 178

Query: 178 LAEEQSSSMISSFRRTISRER 188
           LA   S S+  SFR  +SR+R
Sbjct: 179 LA-SGSGSLFGSFRWMVSRDR 196

[Close]
BLAST of Carg07746 vs. TrEMBL
Match: tr|A0A2P5XUQ7|A0A2P5XUQ7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13544 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.0e-26
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 0 

Query: 59  QISRVDRENHTAAPLPKAGLDPVFIARVLPESIHK----QADHQGEIVECSICLSNIEEK 118
           QI+ VD  + T   LPK+GLDP+ IA  LP   +K    Q  H  E  ECS+CL  I E+
Sbjct: 62  QITPVDISSIT--ELPKSGLDPLVIAS-LPMFTYKVTTGQVSHDDEESECSVCLGTITEE 121

Query: 119 ATVRILPNCKHVFHVGCIDMWLFSNTTCPVCRTAVEPIVPS----AENGEVPTAPPLAEE 178
           + VR+LPNCKH+FHV CID WL S+TTCP+CRT VEP+V S     +N   PTAPPL ++
Sbjct: 122 SMVRLLPNCKHIFHVQCIDTWLGSHTTCPICRTVVEPMVQSENFELDNRVQPTAPPLEQK 181

Query: 179 Q-----SSSMISSFRRTISRER 188
                 S S   SFRR + RER
Sbjct: 182 DSEPSGSGSRFDSFRRMLGRER 200

[Close]
BLAST of Carg07746 vs. TrEMBL
Match: tr|A0A2P5QV65|A0A2P5QV65_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24630 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 0 

Query: 73  LPKAGLDPVFIARVLPESIHK----QADHQGEIVECSICLSNIEEKATVRILPNCKHVFH 132
           LPK+GLDP+ IA  LP   +K    Q  H  +  ECS+CL  I E++TVR+LPNCKH+FH
Sbjct: 74  LPKSGLDPLVIAS-LPMFTYKVTTGQVSHDDDEPECSVCLGTITEESTVRLLPNCKHIFH 133

Query: 133 VGCIDMWLFSNTTCPVCRTAVEPIVPS----AENGEVPTAPPLAEEQ-----SSSMISSF 188
           V CID WL S+TTCP+CRT VEPIV S    + N   PTAPPL ++      S S   SF
Sbjct: 134 VQCIDTWLGSHTTCPICRTVVEPIVQSENFESGNRVQPTAPPLEQKDGELSGSVSRFDSF 193

The following BLAST results are available for this feature:
BLAST of Carg07746 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926420.12.8e-87100.00E3 ubiquitin-protein ligase ATL41-like [Cucurbita moschata][more]
XP_023517839.12.0e-8598.74E3 ubiquitin-protein ligase ATL41-like [Cucurbita pepo subsp. pepo][more]
XP_023004110.14.5e-8595.82E3 ubiquitin-protein ligase ATL41-like [Cucurbita maxima][more]
XP_023544672.11.0e-6580.91E3 ubiquitin-protein ligase ATL41-like [Cucurbita pepo subsp. pepo][more]
XP_022978748.15.7e-6478.37E3 ubiquitin-protein ligase ATL41-like [Cucurbita maxima][more]
BLAST of Carg07746 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42350.14.3e-2144.88RING/U-box superfamily protein[more]
AT2G42360.19.8e-1835.97RING/U-box superfamily protein[more]
AT3G16720.11.1e-1644.86TOXICOS EN LEVADURA 2[more]
AT3G62690.13.2e-1638.38AtL5[more]
AT2G35420.11.6e-1542.86RING/U-box superfamily protein[more]
BLAST of Carg07746 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SLC4|ATL40_ARATH7.7e-2044.88RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1[more]
sp|Q9SLC3|ATL41_ARATH1.8e-1635.97E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ... [more]
sp|Q8L9T5|ATL2_ARATH2.0e-1544.86RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2[more]
sp|Q9LZJ6|ATL5_ARATH5.7e-1538.38RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1[more]
sp|Q6NKR1|ATL28_ARATH2.8e-1442.86RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1[more]
BLAST of Carg07746 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B099|A0A1S3B099_CUCME4.9e-6480.33E3 ubiquitin-protein ligase ATL41-like OS=Cucumis melo OX=3656 GN=LOC103484472 P... [more]
tr|A0A0A0KHT2|A0A0A0KHT2_CUCSA9.3e-6380.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518350 PE=4 SV=1[more]
tr|A0A2C9U561|A0A2C9U561_MANES1.4e-2651.06Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G052900 PE=4 SV=... [more]
tr|A0A2P5XUQ7|A0A2P5XUQ7_GOSBA7.0e-2650.70Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13544 PE=4 SV... [more]
tr|A0A2P5QV65|A0A2P5QV65_GOSBA1.5e-2553.13Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24630 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07746-RACarg07746-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 104..145
e-value: 8.3E-8
score: 41.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 103..146
e-value: 2.6E-13
score: 50.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 104..146
score: 12.711
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 83..152
e-value: 1.9E-20
score: 73.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..210
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 4..183
NoneNo IPR availablePANTHERPTHR14155:SF419SUBFAMILY NOT NAMEDcoord: 4..183
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 103..146
e-value: 3.35638E-16
score: 68.8759
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 95..155

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07746Cla009667Watermelon (97103) v1carwmB0642
Carg07746Csa6G518350Cucumber (Chinese Long) v2carcuB0663
Carg07746MELO3C007236Melon (DHL92) v3.5.1carmeB0642
Carg07746ClCG01G023500Watermelon (Charleston Gray)carwcgB0623
Carg07746CSPI06G35130Wild cucumber (PI 183967)carcpiB0672
Carg07746Cucsa.046720Cucumber (Gy14) v1carcgyB0714
Carg07746CmaCh03G013080Cucurbita maxima (Rimu)carcmaB0913
Carg07746CmoCh03G013070Cucurbita moschata (Rifu)carcmoB0887
Carg07746CmoCh07G002030Cucurbita moschata (Rifu)carcmoB0888
Carg07746Lsi01G002660Bottle gourd (USVL1VR-Ls)carlsiB585
Carg07746Cp4.1LG19g06920Cucurbita pepo (Zucchini)carcpeB0915
Carg07746Cp4.1LG10g05360Cucurbita pepo (Zucchini)carcpeB0912
Carg07746CsGy6G034650Cucumber (Gy14) v2carcgybB0640
Carg07746MELO3C007236.2Melon (DHL92) v3.6.1carmedB0652
Carg07746CsaV3_6G050620Cucumber (Chinese Long) v3carcucB0674
Carg07746Cla97C01G023390Watermelon (97103) v2carwmbB0669
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07746Carg15329Silver-seed gourdcarcarB507
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07746Cucurbita maxima (Rimu)carcmaB0906
Carg07746Cucurbita maxima (Rimu)carcmaB0914
Carg07746Cucurbita moschata (Rifu)carcmoB0882
Carg07746Cucurbita pepo (Zucchini)carcpeB0916
Carg07746Bottle gourd (USVL1VR-Ls)carlsiB586
Carg07746Melon (DHL92) v3.5.1carmeB0639
Carg07746Melon (DHL92) v3.6.1carmedB0648
Carg07746Watermelon (Charleston Gray)carwcgB0625
Carg07746Watermelon (97103) v1carwmB0640
Carg07746Watermelon (97103) v2carwmbB0671
Carg07746Wax gourdcarwgoB0759