Carg07329 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07329
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA/RNP complex-1-interacting phosphatase, putative
Location	Cucurbita_argyrosperma_scaffold_019 : 164315 .. 164680 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

mRNA sequence

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Coding sequence (CDS)

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Protein sequence

MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQVW

Homology

[Close]

BLAST of Carg07329 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_3G690300 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPXXXXXXXXXXXXXXXXX 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+P                 
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  XXS-IPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
               + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of Carg07329 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 3.8e-32
Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 1   MAALSAGHRYFF--GSAAVHFRNRSISPRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALSAGHR+FF  G+A    R     P+SIVLLC H+Q+P                   
Sbjct: 1   MAALSAGHRHFFRRGAAXXXLRTXXXXPKSIVLLCRHSQDP-----SEENSKEGEERKQQ 60

Query: 61  SIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPK 120
            I GFV+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIVCAYFVWMSMPK
Sbjct: 61  KIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMSMPK 116

[Close]

BLAST of Carg07329 vs. NCBI nr
Match: KCW51749.1 (hypothetical protein EUGRSUZ_J01210 [Eucalyptus grandis])

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 56/122 (45.90%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 1   MAALSAGHRYFFG-SAAVHFRNRSISPRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXXS 60
           MA+ S  H YF G S A+    R    + ++ +     +                    +
Sbjct: 1   MASFSFHHHYFRGRSTAIQELKRGDCSKHVITVSCTAHDRQHDDPAMQELKKEKQSKRPT 60

Query: 61  IPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQ 120
             G V+ FEK+G  LK  L PQRKGDWKDL LMSLSFAVYVYISQKIVCAY  W+SMPKQ
Sbjct: 61  FAGIVEGFEKIGKGLKHNLGPQRKGDWKDLALMSLSFAVYVYISQKIVCAYCAWVSMPKQ 120

Query: 121 VW 122
            W
Sbjct: 121 PW 122

[Close]

BLAST of Carg07329 vs. NCBI nr
Match: KDO83463.1 (hypothetical protein CISIN_1g033294mg [Citrus sinensis])

HSP 1 Score: 99.4 bits (246), Expect = 9.1e-18
Identity = 61/126 (48.41%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALS GH +     + H         PR +VLL   +  P                   
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLATQSPEP----VDTSRTKREKEEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of Carg07329 vs. NCBI nr
Match: ESR52322.1 (hypothetical protein CICLE_v10033085mg [Citrus clementina] >GAY37026.1 hypothetical protein CUMW_026070 [Citrus unshiu])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 61/126 (48.41%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALS GH +     + H         PR +VLL   +  P                   
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLASQSPEP----VDTSRTKREKEEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of Carg07329 vs. TAIR10
Match: AT3G52070.1 (unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 69  KMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW--MSMPKQVW 122
           K+G  LK +   ++KGD KDL LMSLSFAVYVYISQ +VCAYF W  +S PK  W
Sbjct: 63  KIGKNLKPE---KKKGDVKDLMLMSLSFAVYVYISQLLVCAYFSWQHLSFPKSSW 114

[Close]

BLAST of Carg07329 vs. TrEMBL
Match: tr|A0A0A0LD14|A0A0A0LD14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.8e-38
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPXXXXXXXXXXXXXXXXX 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+P                 
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  XXS-IPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
               + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of Carg07329 vs. TrEMBL
Match: tr|A0A059ADD2|A0A059ADD2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01210 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18
Identity = 56/122 (45.90%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 1   MAALSAGHRYFFG-SAAVHFRNRSISPRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXXS 60
           MA+ S  H YF G S A+    R    + ++ +     +                    +
Sbjct: 1   MASFSFHHHYFRGRSTAIQELKRGDCSKHVITVSCTAHDRQHDDPAMQELKKEKQSKRPT 60

Query: 61  IPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQ 120
             G V+ FEK+G  LK  L PQRKGDWKDL LMSLSFAVYVYISQKIVCAY  W+SMPKQ
Sbjct: 61  FAGIVEGFEKIGKGLKHNLGPQRKGDWKDLALMSLSFAVYVYISQKIVCAYCAWVSMPKQ 120

Query: 121 VW 122
            W
Sbjct: 121 PW 122

[Close]

BLAST of Carg07329 vs. TrEMBL
Match: tr|A0A067GUR3|A0A067GUR3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033294mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-18
Identity = 61/126 (48.41%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALS GH +     + H         PR +VLL   +  P                   
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLATQSPEP----VDTSRTKREKEEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of Carg07329 vs. TrEMBL
Match: tr|V4TG54|V4TG54_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033085mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.8e-18
Identity = 61/126 (48.41%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALS GH +     + H         PR +VLL   +  P                   
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLASQSPEP----VDTSRTKREKEEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of Carg07329 vs. TrEMBL
Match: tr|A0A2H5N9Z3|A0A2H5N9Z3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_026070 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.8e-18
Identity = 61/126 (48.41%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPXXXXXXXXXXXXXXXXXXX 60
           MAALS GH +     + H         PR +VLL   +  P                   
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLASQSPEP----VDTSRTKREKEEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

The following BLAST results are available for this feature:

BLAST of Carg07329 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58582.1	1.0e-37	69.05	hypothetical protein Csa_3G690300 [Cucumis sativus]	[more]
XP_022152649.1	3.8e-32	65.29	uncharacterized protein LOC111020315 [Momordica charantia]	[more]
KCW51749.1	5.3e-18	45.90	hypothetical protein EUGRSUZ_J01210 [Eucalyptus grandis]	[more]
KDO83463.1	9.1e-18	48.41	hypothetical protein CISIN_1g033294mg [Citrus sinensis]	[more]
ESR52322.1	1.2e-17	48.41	hypothetical protein CICLE_v10033085mg [Citrus clementina] >GAY37026.1 hypotheti...	[more]

BLAST of Carg07329 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52070.1	2.9e-10	61.82	unknown protein	[more]

BLAST of Carg07329 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07329 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LD14\|A0A0A0LD14_CUCSA	6.8e-38	69.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1	[more]
tr\|A0A059ADD2\|A0A059ADD2_EUCGR	3.5e-18	45.90	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01210 PE=4 SV...	[more]
tr\|A0A067GUR3\|A0A067GUR3_CITSI	6.0e-18	48.41	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033294mg PE=4 SV=1	[more]
tr\|V4TG54\|V4TG54_9ROSI	7.8e-18	48.41	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033085mg PE=4 ...	[more]
tr\|A0A2H5N9Z3\|A0A2H5N9Z3_CITUN	7.8e-18	48.41	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_026070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07329-RA	Carg07329-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07329	Csa3G690300	Cucumber (Chinese Long) v2	carcuB0779
Carg07329	MELO3C023985	Melon (DHL92) v3.5.1	carmeB0755
Carg07329	ClCG10G012280	Watermelon (Charleston Gray)	carwcgB0738
Carg07329	CSPI03G29610	Wild cucumber (PI 183967)	carcpiB0797
Carg07329	Cucsa.249010	Cucumber (Gy14) v1	carcgyB0864
Carg07329	CmaCh01G002330	Cucurbita maxima (Rimu)	carcmaB1059
Carg07329	CmaCh14G009960	Cucurbita maxima (Rimu)	carcmaB1057
Carg07329	CmoCh01G002430	Cucurbita moschata (Rifu)	carcmoB1033
Carg07329	Cp4.1LG02g15720	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07329	MELO3C023985.2	Melon (DHL92) v3.6.1	carmedB0770
Carg07329	CsaV3_3G032070	Cucumber (Chinese Long) v3	carcucB0800
Carg07329	Cla97C10G195110	Watermelon (97103) v2	carwmbB0794

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07329	Carg11215	Silver-seed gourd	carcarB605

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07329	Silver-seed gourd	carcarB453
Carg07329	Cucumber (Gy14) v2	carcgybB0756
Carg07329	Cucumber (Gy14) v2	carcgybB0760
Carg07329	Cucumber (Gy14) v1	carcgyB0857
Carg07329	Cucurbita maxima (Rimu)	carcmaB1058
Carg07329	Cucurbita maxima (Rimu)	carcmaB1060
Carg07329	Cucurbita moschata (Rifu)	carcmoB1031
Carg07329	Cucurbita moschata (Rifu)	carcmoB1032
Carg07329	Cucurbita moschata (Rifu)	carcmoB1034
Carg07329	Cucurbita pepo (Zucchini)	carcpeB1070
Carg07329	Cucurbita pepo (Zucchini)	carcpeB1071
Carg07329	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07329	Wild cucumber (PI 183967)	carcpiB0801
Carg07329	Cucumber (Chinese Long) v2	carcuB0783
Carg07329	Cucumber (Chinese Long) v3	carcucB0804
Carg07329	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07329	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07329	Melon (DHL92) v3.5.1	carmeB0753
Carg07329	Melon (DHL92) v3.6.1	carmedB0768
Carg07329	Watermelon (Charleston Gray)	carwcgB0735
Carg07329	Watermelon (Charleston Gray)	carwcgB0736
Carg07329	Watermelon (97103) v1	carwmB0757
Carg07329	Watermelon (97103) v1	carwmB0758
Carg07329	Watermelon (97103) v1	carwmB0759
Carg07329	Watermelon (97103) v2	carwmbB0796
Carg07329	Watermelon (97103) v2	carwmbB0798
Carg07329	Wax gourd	carwgoB0894
Carg07329	Wax gourd	carwgoB0898