CmoCh01G002430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G002430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA/RNP complex-1-interacting phosphatase, putative
Location	Cmo_Chr01 : 1098288 .. 1098653 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

mRNA sequence

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Coding sequence (CDS)

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Homology

[Close]

BLAST of CmoCh01G002430 vs. TrEMBL
Match: A0A0A0LD14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G690300 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.2e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 1


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+PSDP+D SEEK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. TrEMBL
Match: A0A059ADD2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01210 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 64/124 (51.61%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MAALSAGHRYFFG--SAAVHFRNRSISPRSIVLLCL-HNQNPSDPSDPSEEKPKKEQEKK 60
           MA+ S  H YF G  +A    +    S   I + C  H++   DP+   +E  K++Q K+
Sbjct: 1   MASFSFHHHYFRGRSTAIQELKRGDCSKHVITVSCTAHDRQHDDPA--MQELKKEKQSKR 60

Query: 61  QSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMP 120
            +  G V+ FEK+G  LK  L PQRKGDWKDL LMSLSFAVYVYISQKIVCAY  W+SMP
Sbjct: 61  PTFAGIVEGFEKIGKGLKHNLGPQRKGDWKDLALMSLSFAVYVYISQKIVCAYCAWVSMP 120

Query: 121 KQVW 122
           KQ W
Sbjct: 121 KQPW 122

[Close]

BLAST of CmoCh01G002430 vs. TrEMBL
Match: A0A067GUR3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033294mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 67/126 (53.17%), Postives = 76/126 (60.32%), Query Frame = 1


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQ 60
           MAALS GH +     + H         PR +VLL   +  P D S    EK    +EK+ 
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLATQSPEPVDTSRTKREK----EEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of CmoCh01G002430 vs. TrEMBL
Match: V4TG54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033085mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 67/126 (53.17%), Postives = 76/126 (60.32%), Query Frame = 1


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQ 60
           MAALS GH +     + H         PR +VLL   +  P D S    EK    +EK+ 
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLASQSPEPVDTSRTKREK----EEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of CmoCh01G002430 vs. TrEMBL
Match: W9R0U9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012488 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 1   MAALSAGHRYFFGSAAVHFRN--RSISPRSIVLLCLHNQNPSDP-----SDPSEEKPKKE 60
           MAALSA    F+G   ++ R      SPR++V++   +Q P D          E KPK++
Sbjct: 1   MAALSA-RSCFYGKTNLNIRKFPERSSPRTLVIVSCQSQEPIDEVTDKLRTKEEIKPKEQ 60

Query: 61  QE-KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFV 120
           +E  KQS+P F+  FE++G  L+E LSP++KGDWKD+TLMS+SFAVYVY+SQ+IVCAYF 
Sbjct: 61  KEGNKQSLPYFLG-FEELGKSLRENLSPKQKGDWKDVTLMSISFAVYVYMSQQIVCAYFA 120

Query: 121 WMSMPKQVW 122
           WMS+P+Q W
Sbjct: 121 WMSIPRQQW 127

[Close]

BLAST of CmoCh01G002430 vs. TAIR10
Match: AT3G52070.1 (AT3G52070.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 49  KPKKEQEKKQSIPGFVQRFEKMGIELKEKLSPQRK-GDWKDLTLMSLSFAVYVYISQKIV 108
           K K  +E +  I   ++R      ++ + L P++K GD KDL LMSLSFAVYVYISQ +V
Sbjct: 39  KQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLV 98

Query: 109 CAYFVW--MSMPKQVW 122
           CAYF W  +S PK  W
Sbjct: 99  CAYFSWQHLSFPKSSW 114

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: gi|659123731|ref|XP_008461809.1| (PREDICTED: uncharacterized protein LOC103500321 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 4.8e-47
Identity = 101/126 (80.16%), Postives = 113/126 (89.68%), Query Frame = 1


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA V FRNRSISPRSI +LCLHNQ+PSDP+D S+EK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WMS
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: gi|700203449|gb|KGN58582.1| (hypothetical protein Csa_3G690300 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 3.1e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 1


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+PSDP+D SEEK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: gi|641864777|gb|KDO83463.1| (hypothetical protein CISIN_1g033294mg [Citrus sinensis])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 67/126 (53.17%), Postives = 76/126 (60.32%), Query Frame = 1


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQ 60
           MAALS GH +     + H         PR +VLL   +  P D S    EK    +EK+ 
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLATQSPEPVDTSRTKREK----EEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: gi|702477578|ref|XP_010032340.1| (PREDICTED: uncharacterized protein LOC104421890 [Eucalyptus grandis])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 64/124 (51.61%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MAALSAGHRYFFG--SAAVHFRNRSISPRSIVLLCL-HNQNPSDPSDPSEEKPKKEQEKK 60
           MA+ S  H YF G  +A    +    S   I + C  H++   DP+   +E  K++Q K+
Sbjct: 1   MASFSFHHHYFRGRSTAIQELKRGDCSKHVITVSCTAHDRQHDDPA--MQELKKEKQSKR 60

Query: 61  QSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMP 120
            +  G V+ FEK+G  LK  L PQRKGDWKDL LMSLSFAVYVYISQKIVCAY  W+SMP
Sbjct: 61  PTFAGIVEGFEKIGKGLKHNLGPQRKGDWKDLALMSLSFAVYVYISQKIVCAYCAWVSMP 120

Query: 121 KQVW 122
           KQ W
Sbjct: 121 KQPW 122

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: gi|567893123|ref|XP_006439082.1| (hypothetical protein CICLE_v10033085mg [Citrus clementina])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 67/126 (53.17%), Postives = 76/126 (60.32%), Query Frame = 1


Query: 1   MAALSAGHRYFFGSAAVHFRNRSIS--PRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQ 60
           MAALS GH +     + H         PR +VLL   +  P D S    EK    +EK+ 
Sbjct: 1   MAALSFGHSFLTKKTSNHHSELKSKNCPRLVVLLASQSPEPVDTSRTKREK----EEKRN 60

Query: 61  SIPGFVQRF---EKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           S+  F Q F   EK G  LKE LSPQ+KGDWKDL LMSLSFAVYVYISQ  VCAYF WM+
Sbjct: 61  SMQLFSQLFSGAEKFGKNLKENLSPQQKGDWKDLVLMSLSFAVYVYISQMFVCAYFAWMA 120

Query: 121 MPKQVW 122
           MPKQ W
Sbjct: 121 MPKQSW 122

The following BLAST results are available for this feature:

BLAST of CmoCh01G002430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD14_CUCSA	2.2e-46	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G690300 PE=4 SV=1	[more]
A0A059ADD2_EUCGR	1.1e-21	51.61	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01210 PE=4 SV=1	[more]
A0A067GUR3_CITSI	1.1e-21	53.17	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033294mg PE=4 SV=1	[more]
V4TG54_9ROSI	1.4e-21	53.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033085mg PE=4 SV=1	[more]
W9R0U9_9ROSA	2.4e-21	50.39	Uncharacterized protein OS=Morus notabilis GN=L484_012488 PE=4 SV=1	[more]

BLAST of CmoCh01G002430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52070.1	1.1e-09	48.68	unknown protein	[more]

BLAST of CmoCh01G002430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123731\|ref\|XP_008461809.1\|	4.8e-47	80.16	PREDICTED: uncharacterized protein LOC103500321 [Cucumis melo]	[more]
gi\|700203449\|gb\|KGN58582.1\|	3.1e-46	79.37	hypothetical protein Csa_3G690300 [Cucumis sativus]	[more]
gi\|641864777\|gb\|KDO83463.1\|	1.5e-21	53.17	hypothetical protein CISIN_1g033294mg [Citrus sinensis]	[more]
gi\|702477578\|ref\|XP_010032340.1\|	1.5e-21	51.61	PREDICTED: uncharacterized protein LOC104421890 [Eucalyptus grandis]	[more]
gi\|567893123\|ref\|XP_006439082.1\|	2.0e-21	53.17	hypothetical protein CICLE_v10033085mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002430.1	CmoCh01G002430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G002430	Cucsa.249010	Cucumber (Gy14) v1	cgycmoB0693
CmoCh01G002430	CmaCh14G009960	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G002430	CmaCh01G002330	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G002430	Csa3G690300	Cucumber (Chinese Long) v2	cmocuB440
CmoCh01G002430	MELO3C023985	Melon (DHL92) v3.5.1	cmomeB416
CmoCh01G002430	ClCG10G012280	Watermelon (Charleston Gray)	cmowcgB385
CmoCh01G002430	CSPI03G29610	Wild cucumber (PI 183967)	cmocpiB444
CmoCh01G002430	MELO3C023985.2	Melon (DHL92) v3.6.1	cmomedB476
CmoCh01G002430	CsaV3_3G032070	Cucumber (Chinese Long) v3	cmocucB0530
CmoCh01G002430	Cla97C10G195110	Watermelon (97103) v2	cmowmbB426
CmoCh01G002430	Carg07329	Silver-seed gourd	carcmoB1033
CmoCh01G002430	Carg11215	Silver-seed gourd	carcmoB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G002430	Cucumber (Gy14) v1	cgycmoB0341
CmoCh01G002430	Cucurbita maxima (Rimu)	cmacmoB354
CmoCh01G002430	Cucurbita maxima (Rimu)	cmacmoB905
CmoCh01G002430	Wild cucumber (PI 183967)	cmocpiB492
CmoCh01G002430	Cucumber (Chinese Long) v2	cmocuB485
CmoCh01G002430	Melon (DHL92) v3.5.1	cmomeB395
CmoCh01G002430	Watermelon (Charleston Gray)	cmowcgB375
CmoCh01G002430	Watermelon (97103) v1	cmowmB400
CmoCh01G002430	Watermelon (97103) v1	cmowmB410
CmoCh01G002430	Cucurbita pepo (Zucchini)	cmocpeB425
CmoCh01G002430	Cucurbita pepo (Zucchini)	cmocpeB430
CmoCh01G002430	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G002430	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G002430	Bottle gourd (USVL1VR-Ls)	cmolsiB404
CmoCh01G002430	Bottle gourd (USVL1VR-Ls)	cmolsiB409
CmoCh01G002430	Cucumber (Gy14) v2	cgybcmoB337
CmoCh01G002430	Cucumber (Gy14) v2	cgybcmoB921
CmoCh01G002430	Melon (DHL92) v3.6.1	cmomedB449
CmoCh01G002430	Silver-seed gourd	carcmoB0609
CmoCh01G002430	Cucumber (Chinese Long) v3	cmocucB0582
CmoCh01G002430	Watermelon (97103) v2	cmowmbB492
CmoCh01G002430	Watermelon (97103) v2	cmowmbB493
CmoCh01G002430	Wax gourd	cmowgoB0551
CmoCh01G002430	Wax gourd	cmowgoB0609
CmoCh01G002430	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh01G002430	Cucurbita moschata (Rifu)	cmocmoB299
CmoCh01G002430	Cucurbita moschata (Rifu)	cmocmoB378