Carg07312 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTAAAATAATTAAAATTTTGTCTATTTTTATATAATTCACAATAGTTTAAGCATTTTTTTTTTTACTTAAAACAAAAAATGTCTTATACAATTTCCCTCATTTTTTACATTTTTGCGGTTGTCTTTACAGGTGAAATTATGAAATGA ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTGAAATTATGAAATGA ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTGAAATTATGAAATGA MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK
BLAST of Carg07312 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata]) HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Carg07312 vs. NCBI nr
Match: XP_023524609.1 (protein LIM1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54 Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Carg07312 vs. NCBI nr
Match: XP_022998504.1 (protein LIM3-like [Cucurbita maxima]) HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53 Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of Carg07312 vs. NCBI nr
Match: XP_022152678.1 (protein LIM3 [Momordica charantia]) HSP 1 Score: 189.9 bits (481), Expect = 4.5e-45 Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Carg07312 vs. NCBI nr
Match: XP_008461785.1 (PREDICTED: protein LIM3 [Cucumis melo]) HSP 1 Score: 183.3 bits (464), Expect = 4.2e-43 Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0
BLAST of Carg07312 vs. TAIR10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 114.8 bits (286), Expect = 3.3e-26 Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0
BLAST of Carg07312 vs. TAIR10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 113.2 bits (282), Expect = 9.7e-26 Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 0
BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A1S3CFZ5|A0A1S3CFZ5_CUCME (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43 Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0
BLAST of Carg07312 vs. TrEMBL
Match: tr|A5AEY0|A5AEY0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 2.9e-32 Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0
BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A0D2U0U9|A0A0D2U0U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G105400 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31 Identity = 61/107 (57.01%), Postives = 84/107 (78.50%), Query Frame = 0
BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A1U8JDI2|A0A1U8JDI2_GOSHI (protein M7-like OS=Gossypium hirsutum OX=3635 GN=LOC107904778 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31 Identity = 61/107 (57.01%), Postives = 84/107 (78.50%), Query Frame = 0
BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A2N9FTQ2|A0A2N9FTQ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18352 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 2.5e-31 Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|