Carg07312 (gene) Silver-seed gourd

NameCarg07312
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtease inhibitor/seed storage/lipid transfer protein family protein
LocationCucurbita_argyrosperma_scaffold_019 : 82564 .. 83017 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTAAAATAATTAAAATTTTGTCTATTTTTATATAATTCACAATAGTTTAAGCATTTTTTTTTTTACTTAAAACAAAAAATGTCTTATACAATTTCCCTCATTTTTTACATTTTTGCGGTTGTCTTTACAGGTGAAATTATGAAATGA

mRNA sequence

ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTGAAATTATGAAATGA

Coding sequence (CDS)

ATGGGATTTTTAGGCATGAAATGTGTGTCAGTTTGGGTGTTTTTAGTGGTGACGACAAGCTTGTGTGAACAAAGCAAAGGCGAAACATGTAGTTTCACCTTCTTTTCTTCTCTCGTTAGGCTGATTCCGTGCAGGCCATCGGTTGCTCCATTCCGCCCTACTCCGCCGACCGCAGCCTGCTGCAATGCCGTCAGATCTCTCGGCCAGCCTTGCTTGTGCGTGCTTGTTAATGGCCCTCCAGTTGCTGGCGTTGACCGCGACTTGGTCATGCTCTTGCCGGAGAAATGCCCTACCAATTTTGACCCATGTGAAATTATGAAATGA

Protein sequence

MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK
BLAST of Carg07312 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata])

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           MGFLGMKCVSVWVFLVVTTSL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

BLAST of Carg07312 vs. NCBI nr
Match: XP_023524609.1 (protein LIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           MGFLG+KCVS+WVFLVVTTSL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC
Sbjct: 1   MGFLGIKCVSIWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

BLAST of Carg07312 vs. NCBI nr
Match: XP_022998504.1 (protein LIM3-like [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           M FLGMKCVSVWVFLVVTTSL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPTAAC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

BLAST of Carg07312 vs. NCBI nr
Match: XP_022152678.1 (protein LIM3 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 4.5e-45
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           MGFLGMK +S WVFL+V TSL EQSKGETC FTFFSSLVRL+PCRPSVAPFR  PPT AC
Sbjct: 1   MGFLGMKFLSAWVFLLVMTSLGEQSKGETCRFTFFSSLVRLLPCRPSVAPFRAIPPTEAC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           C AV++LGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCE+MK
Sbjct: 61  CKAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCNANFDPCELMK 107

BLAST of Carg07312 vs. NCBI nr
Match: XP_008461785.1 (PREDICTED: protein LIM3 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 4.2e-43
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           MG+L MKC+ VW+FL+ TTSL E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT AC
Sbjct: 17  MGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 76

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 106
           CNAV++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  +FDPCE+
Sbjct: 77  CNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDPCEM 121

BLAST of Carg07312 vs. TAIR10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 3.3e-26
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 30  CSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCLCVLVNGPPVAGVDRDLV 89
           CS TFFS+LV+LIPCR +VAPF P PPT  CC+AV +LG+PCLC+L NGPP++G+DR + 
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 90  MLLPEKCPTNFDPCEIM 107
           + LP++C  NF PC+I+
Sbjct: 108 LQLPQRCSANFPPCDII 124

BLAST of Carg07312 vs. TAIR10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 9.7e-26
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 13  VFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLGQPCL 72
           + ++V + L  ++ G  C  TF S+L++L+PCRPSVAPF   PP   CC A+++LGQPCL
Sbjct: 15  LMVMVQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCL 74

Query: 73  CVLVNGPPVAGVDRDLVMLLPEKCPTNFDPC 104
           CVL  GPP+ GVDR L + LP KC  NF PC
Sbjct: 75  CVLAKGPPIVGVDRTLALHLPGKCSANFLPC 105

BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A1S3CFZ5|A0A1S3CFZ5_CUCME (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           MG+L MKC+ VW+FL+ TTSL E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT AC
Sbjct: 17  MGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 76

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 106
           CNAV++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  +FDPCE+
Sbjct: 77  CNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDPCEM 121

BLAST of Carg07312 vs. TrEMBL
Match: tr|A5AEY0|A5AEY0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-32
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 9   VSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAACCNAVRSLG 68
           V V VFL+V   L  Q KG TC  +FFS+L+++IPCR +VAPF P PP+ ACCNAVR+LG
Sbjct: 348 VPVLVFLLVIAGLAGQGKGTTCGTSFFSALIQMIPCRAAVAPFSPIPPSEACCNAVRTLG 407

Query: 69  QPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPC 104
           QPCLCVLVNGPP++GVDR++ MLLPEKC TNFDPC
Sbjct: 408 QPCLCVLVNGPPISGVDRNMAMLLPEKCTTNFDPC 442

BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A0D2U0U9|A0A0D2U0U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G105400 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 61/107 (57.01%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           M F G K + V++F +V T   ++ +G  CS TFFS+LV+LIPCR +VAPF P PP+  C
Sbjct: 1   MKFFGSKVLPVFLFGLVLTGFVDKGEGNACSSTFFSALVQLIPCRAAVAPFSPIPPSETC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           CNA+++LGQPCLCV+VNGPP++GVDR++ + LPEKC  NF+PC+I+K
Sbjct: 61  CNAIKALGQPCLCVIVNGPPISGVDRNMALQLPEKCTANFEPCDILK 107

BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A1U8JDI2|A0A1U8JDI2_GOSHI (protein M7-like OS=Gossypium hirsutum OX=3635 GN=LOC107904778 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31
Identity = 61/107 (57.01%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           M F G K + V++F +V T   ++ +G  CS TFF++LV+LIPCR +VAPF P PP+  C
Sbjct: 1   MKFFGPKALPVFLFGLVLTGFVDKGEGNACSRTFFTALVQLIPCRAAVAPFSPIPPSETC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           CNA+++LGQPCLCV+VNGPP++GVDR++ + LPEKC  NF+PC+IMK
Sbjct: 61  CNAIKALGQPCLCVIVNGPPISGVDRNMALQLPEKCTANFEPCDIMK 107

BLAST of Carg07312 vs. TrEMBL
Match: tr|A0A2N9FTQ2|A0A2N9FTQ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18352 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-31
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60
           M   G K + + VF++V T L  Q +  TC  TFFSSLV+LIPCR SV+PF PTPPT  C
Sbjct: 1   MKLFGTKSLPLLVFMLVMTGLVGQGQSTTCHSTFFSSLVQLIPCRGSVSPFSPTPPTEVC 60

Query: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 108
           C A+++LGQPCLCVLVNGPP++GVDR++ + LP+KC  NF+PCEIMK
Sbjct: 61  CIALKALGQPCLCVLVNGPPISGVDRNMALQLPDKCIANFEPCEIMK 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022949330.12.8e-5599.07protein LIM1-like [Cucurbita moschata][more]
XP_023524609.11.1e-5497.20protein LIM1-like [Cucurbita pepo subsp. pepo][more]
XP_022998504.11.2e-5397.20protein LIM3-like [Cucurbita maxima][more]
XP_022152678.14.5e-4582.24protein LIM3 [Momordica charantia][more]
XP_008461785.14.2e-4376.19PREDICTED: protein LIM3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G52130.13.3e-2661.04Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G07450.19.7e-2652.75Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CFZ5|A0A1S3CFZ5_CUCME2.8e-4376.19protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1[more]
tr|A5AEY0|A5AEY0_VITVI2.9e-3268.42Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 SV=1[more]
tr|A0A0D2U0U9|A0A0D2U0U9_GOSRA1.4e-3157.01Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G105400 PE=4 ... [more]
tr|A0A1U8JDI2|A0A1U8JDI2_GOSHI1.9e-3157.01protein M7-like OS=Gossypium hirsutum OX=3635 GN=LOC107904778 PE=4 SV=1[more]
tr|A0A2N9FTQ2|A0A2N9FTQ2_FAGSY2.5e-3160.75Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18352 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005504fatty acid binding
Vocabulary: Biological Process
TermDefinition
GO:0009627systemic acquired resistance
Vocabulary: INTERPRO
TermDefinition
IPR036312Bifun_inhib/LTP/seed_sf
IPR039265DIR1-like
IPR016140Bifunc_inhib/LTP/seed_store
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0005504 fatty acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07312-RACarg07312-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 16..99
e-value: 8.7E-9
score: 35.3
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 28..103
e-value: 1.5E-11
score: 45.9
NoneNo IPR availablePANTHERPTHR33122:SF15B PROTEIN LIKE PROTEIN-RELATEDcoord: 7..107
IPR039265Putative lipid-transfer protein DIR1-likePANTHERPTHR33122FAMILY NOT NAMEDcoord: 7..107
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILYSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 38..104

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07312Carg13458Silver-seed gourdcarcarB453