Carg07052 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07052
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SAGA-associated factor 11
Location	Cucurbita_argyrosperma_scaffold_065 : 1149149 .. 1152370 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAATCTTCTTTTTACTTCCTAGTTCTTCCCCTTTATGCAGTCATGTCGGCTCCCAATTAGCTTGGATTTGTAGTCGCTATCCACATCAGTAAGTTCAGCGATTGCTTTCTGCACTTGTCTCCGTTTCCATTGATTTGCCTGATTTCACGAACTTTCTTGTATAATCAATTTTCCAGAAATGCTTGCGTTTGATACTAGTTTGCATGATTTTAGAATGTTAATATATATATTGCTTTACTTGTTTGGTTTGGTGACCTTTACATGTTTGATAATTTAAGAATTTGTTAATCCTTCTACCGGTTCTTGCGTACTTCGATTTCGTCTTTTATTCAATTTCGGTTATTGAATGGAATGATGATTCTATAAATTGGTTTAGTCATTGTGCTGCAACATTTTTCCTGGTTATAATGTTTCCAGGTCTGTATTGAAACTCTTCCTTCTTCTAGATCCATGTCAATGCCTGATGAGGACAATGCATCATCCCAGGTAGCCTTTTCCTATATATTTGTTCTTCTTTTTCTTATTTTTATTTAGCACGTTAGTATATGAATAATGAGAAATGAAGGCAACAGCTACAATGTCTTTGTTTATGTTTATGGTATAGAACCAAAGCCTGATTTAATTGCTGAGATGAAATATGCAAAGACAAGAGTACCATGGTCTAATATCACTGTTATAAACGGTTTACAAGCCTTACAGTCTAACTAGAATAACTGACAAGCAATTAATTAATCTTCACTTAATTAGCCCAATCAGTTCCTAACTAACCAAAAAGAACCTTCCCAACTGGTAAGCTCTATTTCACAGATTTCCCCCACCTCAGTTTGATGATAGTCGACCAAATTGGTTTCTAGATATGAGGAAAAGCACCCGAACTCCATTTTTTTTGTTTTTGTGATTATATCTGCACCAAAGTGTATGTGTCTATGTAAATGGATTAGAATTTCTTTAAAGGGAAAAAAAAAAAAAAAAGATTTCTAATACGTTACTCTTTGCAGTAAATTTTCTTAATTGTCGTTGGCATTTTCCAGAAATAGAATTGTCAAAAATGTGAAGTCTTGTGTGTACAATATATGATATTTCTCCCTTGATTGCTTGGATGAGTGATGTGCGTCTGCTTTTGATAGATCTTATTATGTTAGCAGCGGTCTGTCAACACCTAAACCAACATGTCAAACTCAATGAATTATTTGAAAGCTCTGTCTAACTATTTTCACGTGTGAGAAAAGGCTGGTCTAATGCTAATATAAGCTTAGACATCTATATTTTCTTTAAGAGGTCATAGGTTTGAATTTCTCTACCCTACTTACGATGTCATCAAGGTTTTTAAAAGGATAAAGGTGTGACCTTAAGGCTTTTTCTCTTGAAGAGGCAAGATGTAAGCCTCAAGGCCACAAAAGGGGTAGACCTCAACTTTATTTGAAAACATTATACAAATCCTAAGTTTGTATGATGAACTAGAAATTATATAGAAGTATAAAAAAAAACCACCCCTATAAATAGCAACTTAACCCAAAATTCTAAAAGGATATTTTTAACATGATTACTATTATCAATAATATGATTGACTTGTTCCATAGTTTTTGTCATCTATGTTTTTGAAGCATGAGTAGTAAAAGTAGTAATAATTTATAATGTCACAACTCAAACTTTTATATCTTTTGAAGAATGGGACAAATTAATATTATTCCTCCAATCATTGCATGTGGCATAAAGCCTTTAAGCCTCAATGCATTTTCACGAAGGTGTAAGTCTCTTATGGTCCATAGATGACACAAATCTTGAGGCTATAAGTTAGAGTCTTACCTCAAAGCAACCTTTTATAACATTGAATGTAGTATTCTTAAAAAAGGGCTTGCCGGAGTATGCTTGATGTGTCAAACATGCCATGAAGCACAAGTATGGTAGTAGTGGTATTAGTGATCGCTTTTAACTTCCTTTTTTCAGGACACAGAACTAACAGAACGGGTACTTCTGTTGCTTTCTGCTTATATTTGCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGTAACTTTCTACCCCTTAATTGATATATGTTTTGTTCACACATTCTGCTTCTATTTTTTAAATCTCTTTTCACTCTACTCATCAACTGTCTAATCTATACTATAGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGAACAACAGTGCAATGGCTGAGTTATTTCAATTTAGGAAAACATACTGTAATCTGAATGTGCTCGCAGGAATTTAATGATATCTCCTGTCATGTTTTTATTTTACATGACTTCTTTGTATGGGTTATCATTACATGGGAAAAAATATGTTCTGTTTGGAATCTGGATGTATTATGGGTTCATTACTTTTGTCTGTTCCAAATTTTGACGCTGAAGATCTTGTACAGAAGTTCGAAGAAAGGAAGTTAAGTGCGACTCTAATGTCATTTCTTCAACCTTGAAATGTAATTAGAAAATTGAGTTCAATTGGTCAATCTGGATATTATTTCGATGTGGGGATCAATCTTTGATGGCTACCTGTCTAGAACATATATAATTTTTTCAATGTTTCAGATATTGTAAGATTGAGTAGAACGTGAGGATCATTTAAAAGTAGAGTATCTAGCTCCAAGTGTATCAAATATTTCCATTTGGTTCCATAAAACTTGAGTCCTTATCATACTGGATCTTCTGAAAGGGGCCACAAAGATTATAAAGACGGTTGAACTCGTTCTGTGTTCATTGTCTGACATTTCCCAAGATATTCAGCTCTTTTGCTTGTAATTCTTTTAACAATTTTATG

mRNA sequence

GATGAATCTTCTTTTTACTTCCTAGTTCTTCCCCTTTATGCAGTCATGTCGGCTCCCAATTAGCTTGGATTTGTAGTCGCTATCCACATCAGTCTGTATTGAAACTCTTCCTTCTTCTAGATCCATGTCAATGCCTGATGAGGACAATGCATCATCCCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGAACAACAGTGCAATGGCTGAGTTATTTCAATTTAGGAAAACATACTGTAATCTGAATGTGCTCGCAGGAATTTAATGATATCTCCTGTCATGTTTTTATTTTACATGACTTCTTTGTATGGGTTATCATTACATGGGAAAAAATATGTTCTGTTTGGAATCTGGATGTATTATGGGTTCATTACTTTTGTCTGTTCCAAATTTTGACGCTGAAGATCTTGTACAGAAGTTCGAAGAAAGGAAGTTAAGTGCGACTCTAATGTCATTTCTTCAACCTTGAAATGTAATTAGAAAATTGAGTTCAATTGGTCAATCTGGATATTATTTCGATGTGGGGATCAATCTTTGATGGCTACCTGTCTAGAACATATATAATTTTTTCAATGTTTCAGATATTGTAAGATTGAGTAGAACGTGAGGATCATTTAAAAGTAGAGTATCTAGCTCCAAGTGTATCAAATATTTCCATTTGGTTCCATAAAACTTGAGTCCTTATCATACTGGATCTTCTGAAAGGGGCCACAAAGATTATAAAGACGGTTGAACTCGTTCTGTGTTCATTGTCTGACATTTCCCAAGATATTCAGCTCTTTTGCTTGTAATTCTTTTAACAATTTTATG

Coding sequence (CDS)

ATGTCAATGCCTGATGAGGACAATGCATCATCCCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGA

Protein sequence

MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP

Homology

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BLAST of Carg07052 vs. NCBI nr
Match: XP_022949027.1 (SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179.1 SAGA-associated factor 11 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX 60
           MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX
Sbjct: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           XXXXXXXXXXANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 61  XXXXXXXXXXANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

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BLAST of Carg07052 vs. NCBI nr
Match: XP_022998744.1 (SAGA-associated factor 11 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX 60
           MSMPDEDNASSQL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX
Sbjct: 25  MSMPDEDNASSQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX 84

Query: 61  XXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           XXXXXXXXXXAN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 85  XXXXXXXXXXANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 144

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 145 RLKVTRSSTATQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 200

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BLAST of Carg07052 vs. NCBI nr
Match: XP_022949028.1 (SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 9.6e-69
Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX 70
           +QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 3   AQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           ANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

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BLAST of Carg07052 vs. NCBI nr
Match: XP_022998746.1 (SAGA-associated factor 11 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX 70
           +QL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 3   AQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           AN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

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BLAST of Carg07052 vs. NCBI nr
Match: XP_008457340.1 (PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ataxin-7-like protein 3 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 162/178 (91.01%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60
           MSMP+EDNASS  QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
           XXXXXXXXXXXXANGKYVVDIFG+ HPSVA+EIFDCMNCGRSI+AGRFAPHLEKCMGRGR
Sbjct: 61  XXXXXXXXXXXXANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           KAR KVTRSSTA QSRYSRG+ VSAYSPYPNSTSTNRLPNGTSSLAG EYSNG S +P
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

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BLAST of Carg07052 vs. TAIR10
Match: AT5G58575.1 (Sgf11, transcriptional regulation (InterPro:IPR013246))

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-42
Identity = 94/167 (56.29%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 6   EDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXXXXX 65
           EDN SS  QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+                 
Sbjct: 5   EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query: 66  XXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLK 125
                   N KYVVDIFG+ HP VASE+F+CMNCGR IVAGRFAPHLEKCMG+GRKAR K
Sbjct: 65  DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query: 126 VTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSN 171
            TRS+TA Q+R +R S         NS S N+L +G+  +AG + SN
Sbjct: 125 TTRSTTAAQNRNARRSXXXXXXXXXNSASENQLASGSPGVAGEDCSN 171

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BLAST of Carg07052 vs. Swiss-Prot
Match: sp|A1L209|AT7L3_DANRE (Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 77  VDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 121
           VDIFG+ +    ++   C NC RSI A RFAPHLEKC+G GR +
Sbjct: 69  VDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHLEKCLGMGRNS 112

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BLAST of Carg07052 vs. Swiss-Prot
Match: sp|Q751G1|SGF11_ASHGO (SAGA-associated factor 11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SGF11 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.0e-06
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 77  VDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRK 120
           +D++G+  P  AS  F C NC R + A RFA HLE+CM RG +
Sbjct: 61  LDVYGRPKPQEASVYFRCPNCSRDLSANRFAAHLERCMSRGAR 103

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BLAST of Carg07052 vs. Swiss-Prot
Match: sp|Q14CW9|AT7L3_HUMAN (Ataxin-7-like protein 3 OS=Homo sapiens OX=9606 GN=ATXN7L3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-06
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 77  VDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 121
           +DIFG+      S+   C NC RSI A RFAPHLEKC+G GR +
Sbjct: 69  LDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNS 112

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BLAST of Carg07052 vs. Swiss-Prot
Match: sp|A2AWT3|AT7L3_MOUSE (Ataxin-7-like protein 3 OS=Mus musculus OX=10090 GN=Atxn7l3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-06
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 77  VDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 121
           +DIFG+      S+   C NC RSI A RFAPHLEKC+G GR +
Sbjct: 69  LDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNS 112

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BLAST of Carg07052 vs. Swiss-Prot
Match: sp|Q17CJ5|SGF11_AEDAE (SAGA-associated factor 11 homolog OS=Aedes aegypti OX=7159 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 77  VDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTATQ 133
           +D+FG ++   A +   C NC R + A RFAPHLEKCMG GR +    +R    T+
Sbjct: 84  MDVFGSSNSKKAIDC-SCPNCNRIVAASRFAPHLEKCMGMGRNSSRIASRRIANTR 138

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BLAST of Carg07052 vs. TrEMBL
Match: tr|A0A1S3C599|A0A1S3C599_CUCME (SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.5e-65
Identity = 162/178 (91.01%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60
           MSMP+EDNASS  QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
           XXXXXXXXXXXXANGKYVVDIFG+ HPSVA+EIFDCMNCGRSI+AGRFAPHLEKCMGRGR
Sbjct: 61  XXXXXXXXXXXXANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           KAR KVTRSSTA QSRYSRG+ VSAYSPYPNSTSTNRLPNGTSSLAG EYSNG S +P
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

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BLAST of Carg07052 vs. TrEMBL
Match: tr|A0A0A0LYA8|A0A0A0LYA8_CUCSA (SAGA-associated factor 11 OS=Cucumis sativus OX=3659 GN=Csa_1G533390 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-65
Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60
           MSMP+EDNASS  QLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEXXXXXXXXXXXX
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDIASECHRIARLGLDRNLEXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
           XXXXXXXXXXXXANGKYVVDIFG+ HPSVA+EIFDCMNCGRSI+AGRFAPHLEKCMGRGR
Sbjct: 61  XXXXXXXXXXXXANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           KAR KVTRSSTA QSRYSRG+ VSAYSPYPNSTSTNRLPNGTSSLAG EYSNG S +P
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Carg07052 vs. TrEMBL
Match: tr|A0A2N9IGQ6|A0A2N9IGQ6_FAGSY (SAGA-associated factor 11 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51152 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.5e-57
Identity = 140/178 (78.65%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60
           MSMP+EDN +S  QLSS+F GDLLDS+IVDVASECHRIARLGLDRN  XXXXXXXXXXXX
Sbjct: 1   MSMPNEDNMASHAQLSSHFLGDLLDSIIVDVASECHRIARLGLDRNSXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
           XXXXXX      AN KYVVDIFG++HPSVASE+FDCMNCGR IVAGRFAPHLEKCMG+GR
Sbjct: 61  XXXXXXPSNSSEANSKYVVDIFGQSHPSVASEVFDCMNCGRFIVAGRFAPHLEKCMGKGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           KAR KVTRS+TA Q+RYSRGS VS YSPY NS+S+NRL NGTS +AG EYSNG   EP
Sbjct: 121 KARPKVTRSTTAAQNRYSRGSPVSTYSPYANSSSSNRLSNGTSGVAGEEYSNGTFQEP 178

[Close]

BLAST of Carg07052 vs. TrEMBL
Match: tr|A0A061H0C7|A0A061H0C7_THECC (SAGA-associated factor 11 OS=Theobroma cacao OX=3641 GN=TCM_042184 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.1e-56
Identity = 135/176 (76.70%), Postives = 145/176 (82.39%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXXXX 60
           MS P+EDN  +QLSS+FFGDLLDS+I DVASECHRIA+LGLDRNLE XXXXXXXXXXXXX
Sbjct: 1   MSGPNEDN--TQLSSHFFGDLLDSIIADVASECHRIAKLGLDRNLEEXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           X          N KYVVDIFG+ HPSVASEIF+CMNCGRSIVAGRFAPHLEKCMG+GRKA
Sbjct: 61  XVADPSNSGETNNKYVVDIFGQTHPSVASEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA 120

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTA Q+RYSR S VS YSPY    STNRL NGTS +AG EYSNG   EP
Sbjct: 121 RLKVTRSSTAAQNRYSRSSPVSTYSPYXXXXSTNRLSNGTSGVAGEEYSNGTYEEP 174

[Close]

BLAST of Carg07052 vs. TrEMBL
Match: tr|A0A2I4FAA3|A0A2I4FAA3_9ROSI (SAGA-associated factor 11 OS=Juglans regia OX=51240 GN=LOC108996971 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 5.2e-55
Identity = 117/173 (67.63%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEXXXXXXXXXXXX 60
           MS+P+ED  +S  QLSS+FFGDLLDS+IVDVASECHRIARLGLDRNLE            
Sbjct: 1   MSVPNEDKMASHAQLSSHFFGDLLDSIIVDVASECHRIARLGLDRNLEEEEEELKLSAQA 60

Query: 61  XXXXXXXXXXXXANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
                       AN KYVVDIFG+ HP +AS+IF+CMNC R I+AGRFAPHLEKCMG+GR
Sbjct: 61  RERVADPNNSGEANSKYVVDIFGQTHPPIASDIFECMNCHRPIMAGRFAPHLEKCMGKGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNG 172
           KARLK TRSSTA Q+R+SRGS VS Y PYPNSTSTN+L NGTS +AG EYSNG
Sbjct: 121 KARLKGTRSSTAAQNRHSRGSPVSTYPPYPNSTSTNQLSNGTSGVAGEEYSNG 173

The following BLAST results are available for this feature:

BLAST of Carg07052 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949027.1	5.3e-75	99.43	SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179....	[more]
XP_022998744.1	1.7e-73	97.73	SAGA-associated factor 11 homolog isoform X1 [Cucurbita maxima]	[more]
XP_022949028.1	9.6e-69	98.80	SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata]	[more]
XP_022998746.1	3.1e-67	96.99	SAGA-associated factor 11 homolog isoform X3 [Cucurbita maxima]	[more]
XP_008457340.1	2.2e-65	91.01	PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ata...	[more]

BLAST of Carg07052 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58575.1	1.1e-42	56.29	Sgf11, transcriptional regulation (InterPro:IPR013246)	[more]

BLAST of Carg07052 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A1L209\|AT7L3_DANRE	3.5e-06	54.55	Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1	[more]
sp\|Q751G1\|SGF11_ASHGO	6.0e-06	48.84	SAGA-associated factor 11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]
sp\|Q14CW9\|AT7L3_HUMAN	7.9e-06	54.55	Ataxin-7-like protein 3 OS=Homo sapiens OX=9606 GN=ATXN7L3 PE=1 SV=1	[more]
sp\|A2AWT3\|AT7L3_MOUSE	7.9e-06	54.55	Ataxin-7-like protein 3 OS=Mus musculus OX=10090 GN=Atxn7l3 PE=1 SV=1	[more]
sp\|Q17CJ5\|SGF11_AEDAE	2.3e-05	42.86	SAGA-associated factor 11 homolog OS=Aedes aegypti OX=7159 GN=Sgf11 PE=3 SV=1	[more]

BLAST of Carg07052 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C599\|A0A1S3C599_CUCME	1.5e-65	91.01	SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1	[more]
tr\|A0A0A0LYA8\|A0A0A0LYA8_CUCSA	1.9e-65	90.45	SAGA-associated factor 11 OS=Cucumis sativus OX=3659 GN=Csa_1G533390 PE=3 SV=1	[more]
tr\|A0A2N9IGQ6\|A0A2N9IGQ6_FAGSY	9.5e-57	78.65	SAGA-associated factor 11 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51152 PE=3 SV=...	[more]
tr\|A0A061H0C7\|A0A061H0C7_THECC	8.1e-56	76.70	SAGA-associated factor 11 OS=Theobroma cacao OX=3641 GN=TCM_042184 PE=3 SV=1	[more]
tr\|A0A2I4FAA3\|A0A2I4FAA3_9ROSI	5.2e-55	67.63	SAGA-associated factor 11 OS=Juglans regia OX=51240 GN=LOC108996971 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013246	SAGA_su_Sgf11

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07052-RA	Carg07052-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013246	SAGA complex, Sgf11 subunit	PFAM	PF08209	Sgf11	coord: 89..119 e-value: 2.1E-17 score: 62.3
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 91..119 e-value: 1.7E-9 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..168
None	No IPR available	PANTHER	PTHR15117:SF22	ATAXIN-7-LIKE PROTEIN 3	coord: 3..123
None	No IPR available	PANTHER	PTHR15117	ATAXIN 7 RELATED	coord: 3..123
None	No IPR available	PANTHER	PTHR15117	ATAXIN 7 RELATED	coord: 125..172
None	No IPR available	PANTHER	PTHR15117:SF22	ATAXIN-7-LIKE PROTEIN 3	coord: 125..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07052	Cla008143	Watermelon (97103) v1	carwmB0515
Carg07052	Csa1G533390	Cucumber (Chinese Long) v2	carcuB0550
Carg07052	MELO3C020526	Melon (DHL92) v3.5.1	carmeB0522
Carg07052	ClCG03G000500	Watermelon (Charleston Gray)	carwcgB0504
Carg07052	CSPI01G24120	Wild cucumber (PI 183967)	carcpiB0557
Carg07052	Cucsa.151740	Cucumber (Gy14) v1	carcgyB0602
Carg07052	CmaCh01G006910	Cucurbita maxima (Rimu)	carcmaB0731
Carg07052	Cp4.1LG20g07870	Cucurbita pepo (Zucchini)	carcpeB0737
Carg07052	Cp4.1LG02g12030	Cucurbita pepo (Zucchini)	carcpeB0739
Carg07052	CsGy1G023610	Cucumber (Gy14) v2	carcgybB0525
Carg07052	MELO3C020526.2	Melon (DHL92) v3.6.1	carmedB0528
Carg07052	CsaV3_1G036430	Cucumber (Chinese Long) v3	carcucB0556
Carg07052	Cla97C03G051290	Watermelon (97103) v2	carwmbB0545
Carg07052	Bhi08G000397	Wax gourd	carwgoB0630

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07052	Silver-seed gourd	carcarB497
Carg07052	Cucurbita maxima (Rimu)	carcmaB0728
Carg07052	Cucurbita moschata (Rifu)	carcmoB0705
Carg07052	Cucurbita moschata (Rifu)	carcmoB0708
Carg07052	Bottle gourd (USVL1VR-Ls)	carlsiB472
Carg07052	Watermelon (97103) v2	carwmbB0544