Carg07043 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07043
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase, subunit TIM22
Location	Cucurbita_argyrosperma_scaffold_065 : 1093639 .. 1098102 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTGCTTTCTCGCTCCTTCTCAATCCTTGAAGCTTTTCTTCTTCCTCTCGTATCAATCTCTTCTCCACATCAATGGCTTCCAGTTCTGGCGATGGATCTTCGCACGATCCCGCGAGCTCGAGCGAGTTGGAGAAGCCGCCATTGGAGCCTATAAGGATGCCTACAGTCGAGGAGATTCGCGGCCAAGATATTTGGAACAACTGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATGGGTACGTTAGCCAATTTCTTTCAGTTGTTTTAACTACAATTTGCTTGTTGCTTTTTGTAAATCATTTCCCGCATTCTCACTCCTGTACTTTATTCTAGTTTCTCTTGCCAATACTGGAATGAATCTTCATGTTTTTTCCTCTTATCGTTTACAACAGTATTACTATCTCTCCGTCTCTTAAATGTGATGCCTTATAGTTTCTGTTAAATTGTTCATATTTTAGTTTGAGTCTGGGCTGTATATTTAGTTGCCTAGAGGATTAAGATTGAGAGGCTCAGCCACCGTGTATATGTTGCTTTAATCATAATTTATGTGCTGAAATATTTGCAGGCGGTGGACTTGGATTGTTCATGGGTTTATTTTTGGGGGCATTGGATAATCCATTAATGCAAGACGAGATGACTGCTAGACAGCAATTTGTTTATACTGCAAAACAAATGGGACGGCGTAGTTGGGGTTCTGCAAAAGCGTTTGCAGTTATGGGCTTTGTTTTCTCAGCAGCAGAATGTGTTGTAGAAAAGGTATCATGATCGTTTATTATTATTTTTTTTCTTCTCAGTTTCTGAATGTGATTTTATGGGATCTAATTCTTTCTTCATGTGCTTAGGCTCGAGCCAAACATGATATAACTAATACAGTAGTCGCTGGTTGTGTAACTGGTGGTTCAATATCAGCTAAAGGTAGGCCCTCTTACCCTTGTATCCATGTACGTTCCTCATTTTCTACTCAAGTGTCACCATGTGAATCCTTCAGCTTCTAGGCATGTAAATGTCTTTCACGAAAAAAATTCAGGGGTTCAGTACTCCTGTTGAGCTAAAATACTGGAGTTCGTGCATTTTAGATTGATTCGTGTTCAGAATGAAATTATAAGTTTATGACCTCGATCTTGCAGTAGGAAATAATGTTCTATAGGCTCTACCTCTGCATCCTTGAATTCTAAGGATAATATTATAGGCTCTTGTTTTCCGGGTCACATTACAAAGAAATTTGCAGGGACAGGGTATACATGTGTGCACAAGAAGTTCAATTGGCCTTGCTAATTTATTTCCTTACTATACTTTCTGACTGATCTTGGTTGAAATTTCATCCTTCAAGTTGCCAGAGAATAACCTGTTCGCTTTCAATAACACTGCTGTGCTAGCTTGTGCCCTTTTTTCTCTCTATCTGTTGTGAACAAAAGCTGCAAAGAGACAAAGGCATTGGTCTCCTAGGGGCATCTTTGGATATTTAAAACTACTTAAACCTGACCTGATATCAAATCTTGAAAGATCCTCCAGCTAAACCTCACATAGAATAACTCTAGAAGCATTTGGCCAAAGTAGCCTACCCATCCTTTTAGATTAAGGAATCACCGAGGAGAGCGTCCTTTGTCGAGAAGGGATTAACCCAGCTTATCCCAGAAACACAGAGTTTCTCCACGACAGCTGAAACGTGAAGAGAGAAGAAAAACATCTAGCATTCTCAATATATTCATGTATAATAAATAGCGATTTGGGAAACAAATGTGCAGATTCCTTTCCTTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAATAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGTCACCAGACGATGTGCCGGCCTTCTCGTTGTTCCCCGAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGACCCCAAAGGGGGGTGGATTTGGGGGCGGTCCCACATCGATTGGATAAAGGAACGAGTGCCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTCGGGGAGAAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTAAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTGGCGGTGGATCTGGGTCGTTACATTCCTGGTCTTCATTCATGTTTAAGCCTTCAAGCATAGTCTAAAGTAAAACTTTTACCTAACATTAGATACCAGTCTTTCCATGAAGCCTTAAACTTATTTTTGGAAAATAACTAGTTGCATTAAGTCTATGACAAAGGGTTTCGCTACAAAATACTTCTCTAGAGTCCTGATTGACCTGTCATTCTCACTGCTAACATTTCAGATTTTCAGCATCTGAAGAATTCTTTCCCATTCCTAGATTTCCTCGTATTTCAAATTTGAATTCAAGTTAAAGCATATGGAACTATAGTAGTGATGTCAGCGCTGCCTTACATTTGGAAATTTGCTACCGGTTAGATCATACAGCACTTGACAGGTATTTGACAGTGGCCAGCCCTTGATTCAAATATCTTTTGAAAATGTAACTTATTTTATTTGCCAACCCGGGAAGATTGGGGGGGGGAGGGGGGGGGGGGGTGTGGAGATCATGTGAGAAGATAGGCCAAACACCCAACAAGAGGAGCCACCTAACAAACATTTACAATTGCCACAAAATATCCAATTGTTGATGATAAGAAAAATAAGGGAATATCTAAATCTATCAAAAGTGAGCTAGTAGAAGCTAAGTAGTTATGGAGTTGTAGCTAGGTTTTCCTTTTAATTTTGTGTGTTTTGGTTAGGTTGGTTTGGCTTTGACTGGAGCTGGTATCCAATTTTTTGTATGCCATTCTTGCACTAGCTTATAGAGCCAAAGAAACGTACATTTTTTGTGTAGAGAAATTATAGGACAGTACAAGGAAAGTTTCAGTTAAGCTTTAGAAGCAATTTCATAAAAATATCTTTAGCATGATTTGTGCACACCGCTTTGGTCAACGGTTAGGCAACGACATACGAGGTTTCCTACTAACTGATATAAAGCATTCTTATATGAAAAGTGATAGAAAACATTCCCAATAGATGGAGATATGCCAAATTATGTGTTTATTCATATAAGAGGTTACCATCCATGCCATCGATTTATTCATGTAAAGAGGAATGCTCCCCTCTTGATTTAAGCCATAGATGGAGATATGCCAAATGTTAAAGTAATCACAACCAGATTCAATAGGATCAAACGGTTATCTTAGGAGAATAGTTGCGAGACGTATGTAAACTGACCTGAACACTTTTGGATATCTAAAAAAATATCTTTTGAGGGATTCCCGTCCAACAACCATAAGTTTTTTCTTGCCTTTTGTCAAAATCTGGATTGTAGTTTCTGCTTTTACTTCACATAGCTATTCTGCATCAAACTTTGGGACAATCTCTTTAGCCTCGTTCCATTCTCGTGTTTAAATGAGCAATGTTTGTTTGAAGAATGAATGATTTACAGGTGGAAAAGGACGGAATAACATTAACGACCCAGATCCATCATTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTTAACGCATCTGCTAGGGGAAGGTTTCCACACCCTTATAAATTGTAGTTTGTTCTCCTCCCCAACCAATGTGGTGTTAGATGATAAAACTCCCACCTCGGCTAATTTAGGGAATGATCGTGGGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCTAAACCATGAGAGCTTATGCTCAAAATGGACAATATCATACCATTGTGGAGAGTCATGTTCGTCTAACATGTGGAACATCACAAACACAAAGGGGCTATGTTAACTGAATTGGTTATTTACCATGCTGATTAGTTTGTTCATTGTTTTTAACATGCTTCCCATATCTCAGCTTGTATCGTCTTAATTCAGGTGGCCCAAAGGCAGCTTGTGCCGGTTGTGCTGGTTTTGCAGCATTTTCAGTCGTGATAGAGAAGTTTTTGGACAGACACACTTGAGCTGCGTCTTGTGCTCACAATTTTCTGGTAGCAAAAAGAAAAAGAATCAATGGTAGAGAAATAATAGGTAGCCCGCATTGTAACCATTCTTTTCATCACATAAATCCGAACCCCCTTTTCTATTTGGGATGTACTTTTTCAATATTTTCCTCATTGTTTTAGTAACATTATTCACAATCCCATTTTGTTGGAACAAATTTGTACTCATAGAGACAGGAAATTGGACCATTTTTGCAGAGCTTTAAGATGTGTCATTCAGGTAGCCTCTGGTCATTACGCATTTCGATTTTTTTT

mRNA sequence

TTTTCTTGCTTTCTCGCTCCTTCTCAATCCTTGAAGCTTTTCTTCTTCCTCTCGTATCAATCTCTTCTCCACATCAATGGCTTCCAGTTCTGGCGATGGATCTTCGCACGATCCCGCGAGCTCGAGCGAGTTGGAGAAGCCGCCATTGGAGCCTATAAGGATGCCTACAGTCGAGGAGATTCGCGGCCAAGATATTTGGAACAACTGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATGGGCGGTGGACTTGGATTGTTCATGGGTTTATTTTTGGGGGCATTGGATAATCCATTAATGCAAGACGAGATGACTGCTAGACAGCAATTTGTTTATACTGCAAAACAAATGGGACGGCGTAGTTGGGGTTCTGCAAAAGCGTTTGCAGTTATGGGCTTTGTTTTCTCAGCAGCAGAATGTGTTGTAGAAAAGTTTCTGAATGCTCGAGCCAAACATGATATAACTAATACAGTAGTCGCTGGTTGTGTAACTGGTGGTTCAATATCAGCTAAAGGTGGCCCAAAGGCAGCTTGTGCCGGTTGTGCTGGTTTTGCAGCATTTTCAGTCGTGATAGAGAAGTTTTTGGACAGACACACTTGAGCTGCGTCTTGTGCTCACAATTTTCTGGTAGCAAAAAGAAAAAGAATCAATGGTAGAGAAATAATAGGTAGCCCGCATTGTAACCATTCTTTTCATCACATAAATCCGAACCCCCTTTTCTATTTGGGATGTACTTTTTCAATATTTTCCTCATTGTTTTAGTAACATTATTCACAATCCCATTTTGTTGGAACAAATTTGTACTCATAGAGACAGGAAATTGGACCATTTTTGCAGAGCTTTAAGATGTGTCATTCAGGTAGCCTCTGGTCATTACGCATTTCGATTTTTTTT

Coding sequence (CDS)

ATGGCTTCCAGTTCTGGCGATGGATCTTCGCACGATCCCGCGAGCTCGAGCGAGTTGGAGAAGCCGCCATTGGAGCCTATAAGGATGCCTACAGTCGAGGAGATTCGCGGCCAAGATATTTGGAACAACTGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATGGGCGGTGGACTTGGATTGTTCATGGGTTTATTTTTGGGGGCATTGGATAATCCATTAATGCAAGACGAGATGACTGCTAGACAGCAATTTGTTTATACTGCAAAACAAATGGGACGGCGTAGTTGGGGTTCTGCAAAAGCGTTTGCAGTTATGGGCTTTGTTTTCTCAGCAGCAGAATGTGTTGTAGAAAAGTTTCTGAATGCTCGAGCCAAACATGATATAACTAATACAGTAGTCGCTGGTTGTGTAACTGGTGGTTCAATATCAGCTAAAGGTGGCCCAAAGGCAGCTTGTGCCGGTTGTGCTGGTTTTGCAGCATTTTCAGTCGTGATAGAGAAGTTTTTGGACAGACACACTTGA

Protein sequence

MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVVSGVMGGGLGLFMGLFLGALDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGCVTGGSISAKGGPKAACAGCAGFAAFSVVIEKFLDRHT

Homology

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BLAST of Carg07043 vs. NCBI nr
Match: XP_022948292.1 (mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita moschata] >XP_022998612.1 mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita maxima] >XP_023523181.1 mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 170/173 (98.27%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX
Sbjct: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEK  
Sbjct: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
            ARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT
Sbjct: 121 -ARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 170

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BLAST of Carg07043 vs. NCBI nr
Match: XP_022154905.1 (mitochondrial import inner membrane translocase subunit TIM22-4-like [Momordica charantia])

HSP 1 Score: 246.5 bits (628), Expect = 6.6e-62
Identity = 152/173 (87.86%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MA+++G+GSSHDP SS+E EKPP+EPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX
Sbjct: 1   MATNAGNGSSHDPTSSNEAEKPPIEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXXXDNPLMQ+EMTA+QQF++TAKQMGRRSWGSAKAFAVMGF+FSAAECVVEK  
Sbjct: 61  XXXXXXXXXDNPLMQEEMTAKQQFIFTAKQMGRRSWGSAKAFAVMGFIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
            ARAKHD TNTVVAGCVTGGSISAKGGPKAACA XXXXXX SV+IEKFLDRH+
Sbjct: 121 -ARAKHDTTNTVVAGCVTGGSISAKGGPKAACAXXXXXXXXSVLIEKFLDRHS 170

[Close]

BLAST of Carg07043 vs. NCBI nr
Match: XP_002275144.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4 [Vitis vinifera] >CBI15901.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 229.9 bits (585), Expect = 6.4e-57
Identity = 119/172 (69.19%), Postives = 132/172 (76.74%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           M+S+SG   ++D +SS+E EKP +EPIRMPTVEEIRGQDIWNNCAVRSV           
Sbjct: 1   MSSNSGSEFTNDSSSSTEAEKPQIEPIRMPTVEEIRGQDIWNNCAVRSVASGVMGGGLGL 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
                    DNP+MQ+EMTARQQF+YTAKQMG RSWGSAK FAVMG +FSAAECVVEK  
Sbjct: 61  LMGLFLGALDNPIMQEEMTARQQFIYTAKQMGSRSWGSAKTFAVMGLIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRH 173
            ARAKHD TNTVVAGCVTGG+ISAKGGPKAAC G      FSV+IEKFLDRH
Sbjct: 121 -ARAKHDTTNTVVAGCVTGGAISAKGGPKAACVGCAGFATFSVLIEKFLDRH 169

[Close]

BLAST of Carg07043 vs. NCBI nr
Match: XP_008457318.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4-like [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MAS+SGDG S DP +S++ E+PP+ P+RMPTVEEIRGQDIW+NCAVRSVXXXXXXXXXXX
Sbjct: 1   MASTSGDGFSPDPPTSNDAEQPPIAPMRMPTVEEIRGQDIWDNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXXX   LMQDEMTARQQFVYTAKQMGRR WGSAK+FAVMGF+FSAAECVVEK  
Sbjct: 61  XXXXXXXXXXXXLMQDEMTARQQFVYTAKQMGRRGWGSAKSFAVMGFIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
            ARAKHD+TNTVVAGCVTGG+ISAKGGPKAACA XXXXXX SV+IEKFL+RHT
Sbjct: 121 -ARAKHDMTNTVVAGCVTGGAISAKGGPKAACAXXXXXXXXSVLIEKFLERHT 170

[Close]

BLAST of Carg07043 vs. NCBI nr
Match: XP_018819213.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4-like [Juglans regia])

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 135/172 (78.49%), Postives = 149/172 (86.63%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MAS +G+ S++  + S E E+ P+EP+R+PTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX
Sbjct: 1   MASVAGNESANGSSGSKEAERLPIEPLRLPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXX DNPLMQ+EMT RQQF+YTAKQMGRRSW SAKAFAVMG VFSAAECVVEK  
Sbjct: 61  XXXXXXXXLDNPLMQEEMTGRQQFIYTAKQMGRRSWSSAKAFAVMGLVFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRH 173
            ARAKHD+TNTVVAGCVTGG ISAKGGP+AAC G      FSV+IEKFLDRH
Sbjct: 121 -ARAKHDVTNTVVAGCVTGGVISAKGGPQAACVGCAGFAAFSVLIEKFLDRH 169

[Close]

BLAST of Carg07043 vs. TAIR10
Match: AT3G10110.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-49
Identity = 100/172 (58.14%), Postives = 117/172 (68.02%), Query Frame = 0


Query: 2   ASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXXX 61
           A+    G+S  P +S E     ++PIRMPT+EEIR Q++WNNCAVR+V            
Sbjct: 6   AAEPTTGASSPPVASDE-NSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVMGGGLGLM 65

Query: 62  XXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLN 121
                   DNP+  D MTARQQFV+TAKQMG+RSW S K FAVMG VFSAAEC+VEK   
Sbjct: 66  MGLFLGALDNPITHDTMTARQQFVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEK--- 125

Query: 122 ARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
           ARAKHD  NT +AGCVTGGS+SA+GGPKAAC G      FSV+IEKF DRHT
Sbjct: 126 ARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFSVLIEKFFDRHT 173

[Close]

BLAST of Carg07043 vs. TAIR10
Match: AT1G18320.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-47
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 29  MPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXXXXXXXXXXXDNPLMQDEMTARQQFVYTA 88
           MPT+EEIR Q++WNNCAVR+V                    DNP+  D MTARQQFV+TA
Sbjct: 1   MPTIEEIRAQEVWNNCAVRAVTSGVMGGGLGLMMGLFLGALDNPITHDTMTARQQFVFTA 60

Query: 89  KQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGCVTGGSISAKGGP 148
           KQMG+RSW S K FAVMG VFSAAEC+VEK   ARAKHD  NT +AGCVTGGS+SA+GGP
Sbjct: 61  KQMGQRSWNSCKTFAVMGLVFSAAECIVEK---ARAKHDTVNTAIAGCVTGGSMSARGGP 120

Query: 149 KAACAGXXXXXXFSVVIEKFLDRHT 174
           KAAC G      FSV+IEKF DRHT
Sbjct: 121 KAACIGCAGFAIFSVLIEKFFDRHT 142

[Close]

BLAST of Carg07043 vs. Swiss-Prot
Match: sp|A2RVP7|TI221_ARATH (Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana OX=3702 GN=TIM22-1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-48
Identity = 100/172 (58.14%), Postives = 117/172 (68.02%), Query Frame = 0


Query: 2   ASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXXX 61
           A+    G+S  P +S E     ++PIRMPT+EEIR Q++WNNCAVR+V            
Sbjct: 6   AAEPTTGASSPPVASDE-NSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVMGGGLGLM 65

Query: 62  XXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLN 121
                   DNP+  D MTARQQFV+TAKQMG+RSW S K FAVMG VFSAAEC+VEK   
Sbjct: 66  MGLFLGALDNPITHDTMTARQQFVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEK--- 125

Query: 122 ARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
           ARAKHD  NT +AGCVTGGS+SA+GGPKAAC G      FSV+IEKF DRHT
Sbjct: 126 ARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFSVLIEKFFDRHT 173

[Close]

BLAST of Carg07043 vs. Swiss-Prot
Match: sp|A1XJK0|TI224_ARATH (Mitochondrial import inner membrane translocase subunit TIM22-4 OS=Arabidopsis thaliana OX=3702 GN=TIM22-4 PE=2 SV=3)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-45
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 29  MPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXXXXXXXXXXXDNPLMQDEMTARQQFVYTA 88
           MPT+EEIR Q++WNNCAVR+V                    DNP+  D MTARQQFV+TA
Sbjct: 1   MPTIEEIRAQEVWNNCAVRAVTSGVMGGGLGLMMGLFLGALDNPITHDTMTARQQFVFTA 60

Query: 89  KQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGCVTGGSISAKGGP 148
           KQMG+RSW S K FAVMG VFSAAEC+VEK   ARAKHD  NT +AGCVTGGS+SA+GGP
Sbjct: 61  KQMGQRSWNSCKTFAVMGLVFSAAECIVEK---ARAKHDTVNTAIAGCVTGGSMSARGGP 120

Query: 149 KAACAGXXXXXXFSVVIEKFLDRHT 174
           KAAC G      FSV+IEKF DRHT
Sbjct: 121 KAACIGCAGFAIFSVLIEKFFDRHT 142

[Close]

BLAST of Carg07043 vs. Swiss-Prot
Match: sp|Q6BZY4|TIM22_YARLI (Mitochondrial import inner membrane translocase subunit TIM22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIM22 PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 77  EMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGC 136
           ++  +QQ       MG+R+W SAK F  +G VFS  EC +E   + RAK+DI N V AGC
Sbjct: 82  DLPFKQQMKIQFTDMGKRAWSSAKNFGFIGGVFSGTECCIE---SLRAKNDIWNGVAAGC 141

Query: 137 VTGGSISAKGGPKAACAGXXXXXXFSVVIEKFL 170
           +TGG ++ K GP+AA  G      FS  I+ ++
Sbjct: 142 LTGGGLAVKAGPQAALVGCAGFAAFSAAIDVYM 171

[Close]

BLAST of Carg07043 vs. Swiss-Prot
Match: sp|Q6CRJ6|TIM22_KLULA (Mitochondrial import inner membrane translocase subunit TIM22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIM22 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 77  EMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGC 136
           ++  +QQ       MG+RS+ SAK F  +G ++S  ECVVE   + RAK+DI N V AGC
Sbjct: 93  DLPLKQQIKIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVE---SLRAKNDIYNGVAAGC 152

Query: 137 VTGGSISAKGGPKAACAGXXXXXXFSVVIEKFL 170
           +TGG ++ K GP+AA  G      FS  I+ ++
Sbjct: 153 LTGGGLAYKSGPQAALVGCAGFAAFSTAIDLYM 182

[Close]

BLAST of Carg07043 vs. Swiss-Prot
Match: sp|Q6BT35|TIM22_DEBHA (Mitochondrial import inner membrane translocase subunit TIM22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIM22 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 77  EMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDITNTVVAGC 136
           ++  +QQ       MG+R++ SAK F  +G V+S  EC +E   + RAKHDI N V AGC
Sbjct: 79  DLPFKQQMKLQFSDMGKRTYSSAKNFGYIGMVYSGVECAIE---SLRAKHDIYNGVSAGC 138

Query: 137 VTGGSISAKGGPKAACAGXXXXXXFSVVIEKFL 170
           +TGG ++ + GP+AA  G      FS  I+ +L
Sbjct: 139 ITGGGLAIRAGPQAALVGCAGFAAFSTAIDLYL 168

[Close]

BLAST of Carg07043 vs. TrEMBL
Match: tr|D7SJS5|D7SJS5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07140 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.2e-57
Identity = 119/172 (69.19%), Postives = 132/172 (76.74%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           M+S+SG   ++D +SS+E EKP +EPIRMPTVEEIRGQDIWNNCAVRSV           
Sbjct: 1   MSSNSGSEFTNDSSSSTEAEKPQIEPIRMPTVEEIRGQDIWNNCAVRSVASGVMGGGLGL 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
                    DNP+MQ+EMTARQQF+YTAKQMG RSWGSAK FAVMG +FSAAECVVEK  
Sbjct: 61  LMGLFLGALDNPIMQEEMTARQQFIYTAKQMGSRSWGSAKTFAVMGLIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRH 173
            ARAKHD TNTVVAGCVTGG+ISAKGGPKAAC G      FSV+IEKFLDRH
Sbjct: 121 -ARAKHDTTNTVVAGCVTGGAISAKGGPKAACVGCAGFATFSVLIEKFLDRH 169

[Close]

BLAST of Carg07043 vs. TrEMBL
Match: tr|A0A1S3C5B1|A0A1S3C5B1_CUCME (mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Cucumis melo OX=3656 GN=LOC103497039 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-56
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MAS+SGDG S DP +S++ E+PP+ P+RMPTVEEIRGQDIW+NCAVRSVXXXXXXXXXXX
Sbjct: 1   MASTSGDGFSPDPPTSNDAEQPPIAPMRMPTVEEIRGQDIWDNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXXX   LMQDEMTARQQFVYTAKQMGRR WGSAK+FAVMGF+FSAAECVVEK  
Sbjct: 61  XXXXXXXXXXXXLMQDEMTARQQFVYTAKQMGRRGWGSAKSFAVMGFIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
            ARAKHD+TNTVVAGCVTGG+ISAKGGPKAACA XXXXXX SV+IEKFL+RHT
Sbjct: 121 -ARAKHDMTNTVVAGCVTGGAISAKGGPKAACAXXXXXXXXSVLIEKFLERHT 170

[Close]

BLAST of Carg07043 vs. TrEMBL
Match: tr|A0A2I4EII7|A0A2I4EII7_9ROSI (mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Juglans regia OX=51240 GN=LOC108989902 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 5.1e-55
Identity = 135/172 (78.49%), Postives = 149/172 (86.63%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MAS +G+ S++  + S E E+ P+EP+R+PTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX
Sbjct: 1   MASVAGNESANGSSGSKEAERLPIEPLRLPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
           XXXXXXXX DNPLMQ+EMT RQQF+YTAKQMGRRSW SAKAFAVMG VFSAAECVVEK  
Sbjct: 61  XXXXXXXXLDNPLMQEEMTGRQQFIYTAKQMGRRSWSSAKAFAVMGLVFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRH 173
            ARAKHD+TNTVVAGCVTGG ISAKGGP+AAC G      FSV+IEKFLDRH
Sbjct: 121 -ARAKHDVTNTVVAGCVTGGVISAKGGPQAACVGCAGFAAFSVLIEKFLDRH 169

[Close]

BLAST of Carg07043 vs. TrEMBL
Match: tr|A0A0A0M0Y0|A0A0A0M0Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533580 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.8e-55
Identity = 121/173 (69.94%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXX 60
           MAS+SGDGSS DP +SS+ + PP++P+RMPTVEEIRGQDIW+NCAVRSV           
Sbjct: 1   MASTSGDGSSLDPPTSSDAQLPPIQPVRMPTVEEIRGQDIWDNCAVRSVVSGVMGGGLGF 60

Query: 61  XXXXXXXXXDNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFL 120
                    D  ++QDEMTARQQFV TAKQMGRRSWGSAK+FAVMG +FSAAECVVEK  
Sbjct: 61  FVGLFLASTDTSMVQDEMTARQQFVNTAKQMGRRSWGSAKSFAVMGLIFSAAECVVEK-- 120

Query: 121 NARAKHDITNTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRHT 174
            ARAKHD+TNT+VAGCVTGGSISAKGGPKAAC  XXXXXX   +IEKFL+RHT
Sbjct: 121 -ARAKHDMTNTIVAGCVTGGSISAKGGPKAACXXXXXXXXXXXLIEKFLERHT 170

[Close]

BLAST of Carg07043 vs. TrEMBL
Match: tr|A0A2P6QKE0|A0A2P6QKE0_ROSCH (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0071211 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54
Identity = 111/163 (68.10%), Postives = 125/163 (76.69%), Query Frame = 0


Query: 10  SHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVXXXXXXXXXXXXXXXXXXXX 69
           +++  ++ E+EK P+EP+RMPTVEEIRGQDIWNNC VRSV                    
Sbjct: 6   ANESTATREVEKAPIEPLRMPTVEEIRGQDIWNNCVVRSVASGVMGGGLGLMMGLFLGAL 65

Query: 70  DNPLMQDEMTARQQFVYTAKQMGRRSWGSAKAFAVMGFVFSAAECVVEKFLNARAKHDIT 129
           DNP+MQD+MT RQQF+YTAKQMG RSWGSAKAFAVMGFVFSAAECVVEK   ARAKHD T
Sbjct: 66  DNPVMQDQMTGRQQFIYTAKQMGSRSWGSAKAFAVMGFVFSAAECVVEK---ARAKHDTT 125

Query: 130 NTVVAGCVTGGSISAKGGPKAACAGXXXXXXFSVVIEKFLDRH 173
           NTVVAGCVTGG++SAKGGPKAAC G      FSV+IEKFLDRH
Sbjct: 126 NTVVAGCVTGGALSAKGGPKAACVGCAGFATFSVLIEKFLDRH 165

The following BLAST results are available for this feature:

BLAST of Carg07043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948292.1	1.1e-69	98.27	mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita mosch...	[more]
XP_022154905.1	6.6e-62	87.86	mitochondrial import inner membrane translocase subunit TIM22-4-like [Momordica ...	[more]
XP_002275144.1	6.4e-57	69.19	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4 [Viti...	[more]
XP_008457318.1	2.4e-56	83.82	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4-like ...	[more]
XP_018819213.1	7.8e-55	78.49	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-4-like ...	[more]

BLAST of Carg07043 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10110.1	2.0e-49	58.14	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT1G18320.1	5.6e-47	62.76	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

BLAST of Carg07043 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2RVP7\|TI221_ARATH	3.7e-48	58.14	Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis t...	[more]
sp\|A1XJK0\|TI224_ARATH	1.0e-45	62.76	Mitochondrial import inner membrane translocase subunit TIM22-4 OS=Arabidopsis t...	[more]
sp\|Q6BZY4\|TIM22_YARLI	2.9e-13	41.94	Mitochondrial import inner membrane translocase subunit TIM22 OS=Yarrowia lipoly...	[more]
sp\|Q6CRJ6\|TIM22_KLULA	3.8e-13	41.94	Mitochondrial import inner membrane translocase subunit TIM22 OS=Kluyveromyces l...	[more]
sp\|Q6BT35\|TIM22_DEBHA	5.0e-13	40.86	Mitochondrial import inner membrane translocase subunit TIM22 OS=Debaryomyces ha...	[more]

BLAST of Carg07043 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|D7SJS5\|D7SJS5_VITVI	4.2e-57	69.19	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07140 PE=4 SV=...	[more]
tr\|A0A1S3C5B1\|A0A1S3C5B1_CUCME	1.6e-56	83.82	mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Cucumis ...	[more]
tr\|A0A2I4EII7\|A0A2I4EII7_9ROSI	5.1e-55	78.49	mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Juglans ...	[more]
tr\|A0A0A0M0Y0\|A0A0A0M0Y0_CUCSA	8.8e-55	69.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533580 PE=4 SV=1	[more]
tr\|A0A2P6QKE0\|A0A2P6QKE0_ROSCH	2.0e-54	68.10	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal p...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042721	mitochondrial inner membrane protein insertion complex

Vocabulary: **Biological Process**
Term	Definition
GO:0045039	protein import into mitochondrial inner membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR039175	TIM22

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein import into mitochondrial inner membrane
cellular_component	GO:0042721	mitochondrial inner membrane protein insertion complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07043-RA	Carg07043-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 44..162 e-value: 7.6E-27 score: 93.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR14110:SF0	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 19..172
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 19..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07043	Csa1G533580	Cucumber (Chinese Long) v2	carcuB0550
Carg07043	MELO3C020507	Melon (DHL92) v3.5.1	carmeB0522
Carg07043	CSPI01G24320	Wild cucumber (PI 183967)	carcpiB0557
Carg07043	Cucsa.151920	Cucumber (Gy14) v1	carcgyB0602
Carg07043	CmaCh01G006990	Cucurbita maxima (Rimu)	carcmaB0731
Carg07043	CmoCh01G007260	Cucurbita moschata (Rifu)	carcmoB0708
Carg07043	CmoCh13G000340	Cucurbita moschata (Rifu)	carcmoB0705
Carg07043	Lsi02G012330	Bottle gourd (USVL1VR-Ls)	carlsiB472
Carg07043	Cp4.1LG20g07990	Cucurbita pepo (Zucchini)	carcpeB0737
Carg07043	Cp4.1LG02g12020	Cucurbita pepo (Zucchini)	carcpeB0739
Carg07043	MELO3C020507.2	Melon (DHL92) v3.6.1	carmedB0528
Carg07043	CsaV3_1G036620	Cucumber (Chinese Long) v3	carcucB0556
Carg07043	Cla97C03G051120	Watermelon (97103) v2	carwmbB0545
Carg07043	Bhi08G000374	Wax gourd	carwgoB0630

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07043	Carg26038	Silver-seed gourd	carcarB497

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07043	Cucumber (Gy14) v2	carcgybB0523
Carg07043	Cucumber (Gy14) v2	carcgybB0525
Carg07043	Cucumber (Gy14) v1	carcgyB0600
Carg07043	Cucurbita maxima (Rimu)	carcmaB0728
Carg07043	Wild cucumber (PI 183967)	carcpiB0554
Carg07043	Cucumber (Chinese Long) v2	carcuB0547
Carg07043	Cucumber (Chinese Long) v3	carcucB0554
Carg07043	Watermelon (Charleston Gray)	carwcgB0504
Carg07043	Watermelon (97103) v1	carwmB0515
Carg07043	Watermelon (97103) v2	carwmbB0544