Carg07028 (gene) Silver-seed gourd

NameCarg07028
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein LURP-one-related 7
LocationCucurbita_argyrosperma_scaffold_065 : 994923 .. 997075 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAAAAAATTGGGAGAAGTTTTGCTAGTGTATTACTCACGTGGTTCTAGTGTTCCTGTTCGTAGCTGTTACTGTTACAGAATGCTTTAGAATTTTAGGTCATTCAGTTTGTCTATCGATCCTTTCTTGTACGTTTTATGTTCCTTATTCTTGTTTAAGATTTTAGGATTGTGATCGCTGGGACTTGCTAATAATTACTTTGCATTTGGTCATTATCATTCCATATGAGCTCGTGAAATAGTTGCAAGATAGTATTCTTTTAGAGTTGTTAAAAGCGCAGGAAGGCTTCCTTTTTGCTGTTTTTCTGAAATAATGTGAACAAGTTTGCGTTGGTCACAGAAAGAATCTTGGCAAGGTTTCAAGGGGGATATTGGCGAGCAGGACTTGCTCTTCAAAGTGGAAAGAACACTCAACAAACTTAGAAGAACTGAATTCAAAGTCTTCCTTGTGGGTGAAAATTCAGACGACTCAAATGCTAGCTTGGAGATGAAAGGCTTTCCTTTCCAGAGATCCTGTACTGTATATAAAGGCAACGCTATAGTGGCTCAGGTACTGTATAGCAATAAACATATGGAAGAATGTTCTTATAAGGCTGTTCATTTCATCCCTAAGCATGTTGCTAACTTGATGCTTGCTAATTGCTATAGCCTAGTTACTATTAACATTCAAAGAGTTATAATTGATTAGATCATATTTAATTTTGGTTTCATATTCAACTTAAACACCAATGCCCATCATTTAGATTGCCCATCAGAAGCTCATAATTGTTCTTATAAGGAAGAATGTTCTTATTGTTGGATGATGATCGGCTAATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGACATTTTGGGAAGCCCAAAACGAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTAGAGAGTCGTGTTTGGTTAACATGGTGTCGGAGCCATGCCCTAAACTTAGTCGTGCTGATAGATTGGTAAATCCTCAAATATCGAACAAAAGACTCAAAAAGTAAAAGAGTCGAGCCTCCTCGAAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTTGATTAAGGGGAGGTGTACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATGGGTTTATAAGCAAAGAATACTCTCTCCATTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGCTTATATTTAAAGTGAACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACACTTATAAGGCTGTTGATTACTATAACATTCAAAGAGTTATAATTGATTAGATCATTTTTAATTTTGGTTTCATATTCAACTTAAACACCAATCCCCATCATTTAGATTGCCCATCAGAAGCTCATAATTGTTTTGTTACTTCATCACCAATGCCATCAAATTAGATTGAGCATTCAACAAAGATACCAACACTTTCAAAATAGTGTGCAACTTATGCAAGGTGAAAGCCTTATGGATGGTGAAATCTGTAAATAAATCATCAATACCTCTCCTCTGAGTCTATGTTAGTGTCTTTCATTTGGCACATCTTAGAAAGCTATGGTTCATTGGCAAAAAGGGGGGAAATTCTTGTGAAATAAACTGAATTCTTATTGCAAAAACATTGCATTCCTTCGTACATAAACTCCAAAGGGTCATTTGCATTGGTAACTAAAGAGTTGTGGTGATTATTGCTTTTTTGATGCAGACAAGCCTGATGCACAAGCTTCACCAAATTTGCGTCAGAAGAGGAAGATTTCGACTAACCATTTTTCCTGGCACTGTAGATCCATCCTTGATCGTGGCTTTGATTGTAATATTCTTTGATGGACGAATATAACAGAACTGAGCCATAATTCAGAAGATGCTCATCTTTATGATGTTTGAAAAGGAAGATTGAATGCAAGAAGAAAAGAACCAAAATCTTGCCAACTAAAAAGGCAGCTCCAGAATAAAGATGCAAAAAACAAATATCAGGCAAGATTTTATTGATGAGTTAAAGAGTTGCTATGTTTGTAAATGCTTTTTCTCAATATAGGGAATTTGTAAACAAGATTAAAGATTTGCATGTGGATTTTTTTT

mRNA sequence

ACGAAAAAATTGGGAGAAGTTTTGCTAGTGTATTACTCACGTGGTTCTAGTGTTCCTGTTCGTAGCTGTTACTGTTACAGAATGCTTTAGAATTTTAGGTCATTCAGTTTGTCTATCGATCCTTTCTTGTACGTTTTATGTTCCTTATTCTTGTTTAAGATTTTAGGATTGTGATCGCTGGGACTTGCTAATAATTACTTTGCATTTGGTCATTATCATTCCATATGAGCTCGTGAAATAGTTGCAAGATAGTATTCTTTTAGAGTTGTTAAAAGCGCAGGAAGGCTTCCTTTTTGCTGTTTTTCTGAAATAATGTGAACAAGTTTGCGTTGGTCACAGAAAGAATCTTGGCAAGGTTTCAAGGGGGATATTGGCGAGCAGGACTTGCTCTTCAAAGTGGAAAGAACACTCAACAAACTTAGAAGAACTGAATTCAAAGTCTTCCTTGTGGGTGAAAATTCAGACGACTCAAATGCTAGCTTGGAGATGAAAGGCTTTCCTTTCCAGAGATCCTGTACTGTATATAAAGGCAACGCTATAGTGGCTCAGACAAGCCTGATGCACAAGCTTCACCAAATTTGCGTCAGAAGAGGAAGATTTCGACTAACCATTTTTCCTGGCACTGTAGATCCATCCTTGATCGTGGCTTTGATTGTAATATTCTTTGATGGACGAATATAACAGAACTGAGCCATAATTCAGAAGATGCTCATCTTTATGATGTTTGAAAAGGAAGATTGAATGCAAGAAGAAAAGAACCAAAATCTTGCCAACTAAAAAGGCAGCTCCAGAATAAAGATGCAAAAAACAAATATCAGGCAAGATTTTATTGATGAGTTAAAGAGTTGCTATGTTTGTAAATGCTTTTTCTCAATATAGGGAATTTGTAAACAAGATTAAAGATTTGCATGTGGATTTTTTTT

Coding sequence (CDS)

ATGAAAGGCTTTCCTTTCCAGAGATCCTGTACTGTATATAAAGGCAACGCTATAGTGGCTCAGACAAGCCTGATGCACAAGCTTCACCAAATTTGCGTCAGAAGAGGAAGATTTCGACTAACCATTTTTCCTGGCACTGTAGATCCATCCTTGATCGTGGCTTTGATTGTAATATTCTTTGATGGACGAATATAA

Protein sequence

MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFFDGRI
BLAST of Carg07028 vs. NCBI nr
Match: XP_022948358.1 (protein LURP-one-related 7 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKGFPFQRSCT+YKGN IVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF
Sbjct: 123 MKGFPFQRSCTIYKGNTIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 182

Query: 61  DGRI 65
           DGRI
Sbjct: 183 DGRI 186

BLAST of Carg07028 vs. NCBI nr
Match: XP_022998604.1 (protein LURP-one-related 7 [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKGFPFQRSCT+YKGN IVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF
Sbjct: 124 MKGFPFQRSCTIYKGNTIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 183

Query: 61  DGRI 65
           DGRI
Sbjct: 184 DGRI 187

BLAST of Carg07028 vs. NCBI nr
Match: XP_023523464.1 (protein LURP-one-related 7 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKGFPFQRSCT+YKGN IVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF
Sbjct: 126 MKGFPFQRSCTIYKGNTIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 185

Query: 61  DGRI 65
           DGRI
Sbjct: 186 DGRI 189

BLAST of Carg07028 vs. NCBI nr
Match: XP_023523465.1 (protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKGFPFQRSCT+YKGN IVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF
Sbjct: 125 MKGFPFQRSCTIYKGNTIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 184

Query: 61  DGRI 65
           DGRI
Sbjct: 185 DGRI 188

BLAST of Carg07028 vs. NCBI nr
Match: XP_022154859.1 (protein LURP-one-related 7 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKG+PFQRSCT+YKGN IVAQTSLMHKL+Q+ VRRGRFRLTIFPG+VDP+LIVAL+VIFF
Sbjct: 124 MKGWPFQRSCTIYKGNTIVAQTSLMHKLNQVWVRRGRFRLTIFPGSVDPALIVALVVIFF 183

Query: 61  DGRI 65
           DGR+
Sbjct: 184 DGRM 187

BLAST of Carg07028 vs. TAIR10
Match: AT2G30270.1 (Protein of unknown function (DUF567))

HSP 1 Score: 87.4 bits (215), Expect = 3.4e-18
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           +KG PFQ+SCT+Y  ++IVAQTSLM+KL QI V R +FRLTIFPG++D SL+VA++ IF 
Sbjct: 121 IKGVPFQKSCTIYSQDSIVAQTSLMYKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAIFL 180

Query: 61  DG 63
            G
Sbjct: 181 QG 182

BLAST of Carg07028 vs. Swiss-Prot
Match: sp|Q8GWL2|LOR7_ARATH (Protein LURP-one-related 7 OS=Arabidopsis thaliana OX=3702 GN=At2g30270 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-17
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           +KG PFQ+SCT+Y  ++IVAQTSLM+KL QI V R +FRLTIFPG++D SL+VA++ IF 
Sbjct: 121 IKGVPFQKSCTIYSQDSIVAQTSLMYKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAIFL 180

Query: 61  DG 63
            G
Sbjct: 181 QG 182

BLAST of Carg07028 vs. TrEMBL
Match: tr|A0A1S3CIB3|A0A1S3CIB3_CUCME (protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.6e-24
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKG+PFQRSCTVY GN IVAQTSLMHKLHQI VRRGRFRLTIFP +VDP+LIVALIVIFF
Sbjct: 122 MKGWPFQRSCTVYSGNTIVAQTSLMHKLHQIWVRRGRFRLTIFPSSVDPALIVALIVIFF 181

Query: 61  DGRI 65
           DGR+
Sbjct: 182 DGRM 185

BLAST of Carg07028 vs. TrEMBL
Match: tr|A0A0A0K429|A0A0A0K429_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-23
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKG+PFQRSCTVY GN IVAQTSLMHKL QI VRRGRFRLTIFP +VDP+LIVALIVIFF
Sbjct: 122 MKGWPFQRSCTVYNGNTIVAQTSLMHKLRQIWVRRGRFRLTIFPSSVDPALIVALIVIFF 181

Query: 61  DGRI 65
           DGR+
Sbjct: 182 DGRM 185

BLAST of Carg07028 vs. TrEMBL
Match: tr|A0A2P5AN03|A0A2P5AN03_9ROSA (LURP1-related protein domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_346240 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.3e-19
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           +KGFPFQR+CT+YKGN IVAQTSLM+KL+QI V+RG+FRLTIFPG++D +LIVAL+VIF 
Sbjct: 122 VKGFPFQRACTIYKGNDIVAQTSLMYKLNQIFVKRGKFRLTIFPGSIDHALIVALVVIFL 181

Query: 61  DG 63
            G
Sbjct: 182 HG 183

BLAST of Carg07028 vs. TrEMBL
Match: tr|A0A1Q3ASE9|A0A1Q3ASE9_CEPFO (Tub_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02184 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.3e-19
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           +KG PFQRSCT+YKG++IVAQTSLM+KL+QI  RR RFR+TIFPG++D +L+VA +VIFF
Sbjct: 129 VKGCPFQRSCTIYKGDSIVAQTSLMYKLNQIYARRSRFRVTIFPGSIDHALVVAFVVIFF 188

Query: 61  DGR 64
           DGR
Sbjct: 189 DGR 191

BLAST of Carg07028 vs. TrEMBL
Match: tr|A0A218XG08|A0A218XG08_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004294 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MKGFPFQRSCTVYKGNAIVAQTSLMHKLHQICVRRGRFRLTIFPGTVDPSLIVALIVIFF 60
           MKGFPFQRSCT+ +G++IVAQTSLMHKLHQI VRR +FR+TI+PG+ D +LIVA++VIF 
Sbjct: 126 MKGFPFQRSCTICRGDSIVAQTSLMHKLHQIYVRRSKFRVTIYPGSADHALIVAMVVIFL 185

Query: 61  DG 63
           DG
Sbjct: 186 DG 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948358.18.7e-2896.88protein LURP-one-related 7 [Cucurbita moschata][more]
XP_022998604.18.7e-2896.88protein LURP-one-related 7 [Cucurbita maxima][more]
XP_023523464.18.7e-2896.88protein LURP-one-related 7 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023523465.18.7e-2896.88protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022154859.11.0e-2384.38protein LURP-one-related 7 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G30270.13.4e-1862.90Protein of unknown function (DUF567)[more]
Match NameE-valueIdentityDescription
sp|Q8GWL2|LOR7_ARATH6.2e-1762.90Protein LURP-one-related 7 OS=Arabidopsis thaliana OX=3702 GN=At2g30270 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CIB3|A0A1S3CIB3_CUCME8.6e-2487.50protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=4 SV=1[more]
tr|A0A0A0K429|A0A0A0K429_CUCSA7.3e-2385.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=4 SV=1[more]
tr|A0A2P5AN03|A0A2P5AN03_9ROSA8.3e-1974.19LURP1-related protein domain containing protein OS=Trema orientalis OX=63057 GN=... [more]
tr|A0A1Q3ASE9|A0A1Q3ASE9_CEPFO8.3e-1971.43Tub_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02... [more]
tr|A0A218XG08|A0A218XG08_PUNGR1.1e-1872.58Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004294 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025659Tubby-like_C
IPR038595LOR_sf
IPR007612LOR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07028-RACarg07028-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007612LURP-one-relatedPFAMPF04525LORcoord: 2..58
e-value: 7.9E-7
score: 28.8
IPR007612LURP-one-relatedPANTHERPTHR31087FAMILY NOT NAMEDcoord: 1..62
IPR038595LURP-one-related superfamilyGENE3DG3DSA:3.20.90.20coord: 1..63
e-value: 1.3E-13
score: 52.8
NoneNo IPR availablePANTHERPTHR31087:SF16PROTEIN LURP-ONE-RELATED 7coord: 1..62
IPR025659Tubby-like, C-terminalSUPERFAMILYSSF54518Tubby C-terminal domain-likecoord: 1..59

The following gene(s) are paralogous to this gene:

None