Carg06888 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06888
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Gibberellin regulated protein
Location	Cucurbita_argyrosperma_scaffold_065 : 168693 .. 169406 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCCTTTCCACCTTCCTCCTCCTCTGCCTTGCCTTCATGCTTCTTTCATCCACACACATTCAGGTAAATACAAAATTTTATCATTTTTTTTTCTTTTTAATTCTCAATGAATTTCTCAATAAAAAATGAAACATTTTGAATATTCAAACAAAATGTTAATTAATAAATCTTTTTAAACAAAATAAAATCATCTTTTAGGTAAGTTTAAATAAAAAATAAAAAATTGTAATAATAAACGTGGCGGTGACGTGGCGGTAACTTTGGCGGTTCCCAATTAAATAATCGAGATGTGTCGATAAAAAGTGGACCGGCCGATGAAGCGGCGAGAAATAATGGGCGAATTTTCCCTGTCCCGCAGGCCGCCGCTAGCATTGAAACAGCAGTAGCGTCGTCAAAGATGTATGGCGGCACCCAGGGCAGCCTCCGTCCGGAAGGTATTTTCTTTTCCCGTTTCACTGGTCCAGTCGGAACCATAATCTTAAACTCTCTACATTTTTCGTTTTGGCCTTCTGCGGCGGCGTTTCAGAATGCGGGGGGCGGTGCACGGTGCGGTGCTCGGCAACGTCGTTCAAGAAGCCGTGTATGGTGTTCTGCAGAAAGTGCTGTGCGAAGTGCTTGTGCGTTCCTCCCGGCACCTATGGGAATAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGTGGCCCGAAATGCCCCTAG

mRNA sequence

ATGGCTACCCTTTCCACCTTCCTCCTCCTCTGCCTTGCCTTCATGCTTCTTTCATCCACACACATTCAGGCCGCCGCTAGCATTGAAACAGCAGTAGCGTCGTCAAAGATGTATGGCGGCACCCAGGGCAGCCTCCGTCCGGAAGAATGCGGGGGGCGGTGCACGGTGCGGTGCTCGGCAACGTCGTTCAAGAAGCCGTGTATGGTGTTCTGCAGAAAGTGCTGTGCGAAGTGCTTGTGCGTTCCTCCCGGCACCTATGGGAATAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGTGGCCCGAAATGCCCCTAG

Coding sequence (CDS)

ATGGCTACCCTTTCCACCTTCCTCCTCCTCTGCCTTGCCTTCATGCTTCTTTCATCCACACACATTCAGGCCGCCGCTAGCATTGAAACAGCAGTAGCGTCGTCAAAGATGTATGGCGGCACCCAGGGCAGCCTCCGTCCGGAAGAATGCGGGGGGCGGTGCACGGTGCGGTGCTCGGCAACGTCGTTCAAGAAGCCGTGTATGGTGTTCTGCAGAAAGTGCTGTGCGAAGTGCTTGTGCGTTCCTCCCGGCACCTATGGGAATAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGTGGCCCGAAATGCCCCTAG

Protein sequence

MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP

Homology

[Close]

BLAST of Carg06888 vs. NCBI nr
Match: XP_022944307.1 (gibberellin-regulated protein 5-like [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 7.5e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60
           MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA
Sbjct: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60

Query: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of Carg06888 vs. NCBI nr
Match: XP_022985831.1 (protein GAST1-like [Cucurbita maxima])

HSP 1 Score: 223.4 bits (568), Expect = 3.7e-55
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60
           MATLSTFLLLCLA MLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA
Sbjct: 1   MATLSTFLLLCLALMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60

Query: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of Carg06888 vs. NCBI nr
Match: XP_023511912.1 (protein GAST1-like [Cucurbita pepo subsp. pepo] >XP_023511913.1 protein GAST1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 5.4e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60
           MATLSTFLLLC A MLLSSTHIQAA SIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA
Sbjct: 1   MATLSTFLLLCSALMLLSSTHIQAAVSIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60

Query: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of Carg06888 vs. NCBI nr
Match: XP_022153040.1 (protein GAST1-like [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 8.9e-41
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSA 60
           MA++S+ LLL L  M L  TH QAA+S E A  SS++YG T+G+L+P+ECGGRCT RCSA
Sbjct: 1   MASISSLLLLSLPLMFLFFTHNQAASSTEAAATSSELYGTTEGTLQPQECGGRCTARCSA 60

Query: 61  TSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           T+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 61  TAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of Carg06888 vs. NCBI nr
Match: XP_007015173.2 (PREDICTED: protein GAST1 [Theobroma cacao])

HSP 1 Score: 153.3 bits (386), Expect = 4.7e-34
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVA----SSKMYGGTQGSLRPEECGGRCTV 60
           MA + + ++LC   ML+    IQA++           ++ MYG TQGSLRP+ECG RCT 
Sbjct: 1   MAKVLSIVMLCFLLMLVLLGEIQASSPASQKQRRGNHANGMYGATQGSLRPQECGPRCTT 60

Query: 61  RCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           RCSAT++KKPCM FC+KCCAKCLCVPPGTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  RCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQYCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of Carg06888 vs. TAIR10
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-29
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 4   LSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSF 63
           +++FLLL + F  +  T        + A    + YG   GSL+  +CGG+CT RCS T +
Sbjct: 5   ITSFLLLTILFTFVCLT------MSKEAEYHPESYG--PGSLKSYQCGGQCTRRCSNTKY 64

Query: 64  KKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
            KPCM FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKT++GGPKCP
Sbjct: 65  HKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of Carg06888 vs. TAIR10
Match: AT3G02885.1 (GAST1 protein homolog 5)

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-28
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 5   STFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSFK 64
           +    L L F+L  S  +QAA             GG  G L+P++C  +C+ RCSATS K
Sbjct: 8   NALFFLTLLFLLSVSNLVQAAR------------GG--GKLKPQQCNSKCSFRCSATSHK 67

Query: 65  KPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           KPCM FC KCC KCLCVPPGT+GNKQ CPCYNNWKTK G PKCP
Sbjct: 68  KPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

[Close]

BLAST of Carg06888 vs. TAIR10
Match: AT2G30810.1 (Gibberellin-regulated family protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 16  LLSSTHIQAAASIETAVASSKMY-GGTQGSLRPEECGGRCTVRCSATSFKKPCMVFCRKC 75
           LL +T       +E+   +  ++  G +GSL+PEEC   C  RCSATS +KPC+ FC KC
Sbjct: 13  LLFATQFSNGDELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCLFFCNKC 72

Query: 76  CAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           C KCLCVP GTYG+K+ CPCYNNW TK GGPKCP
Sbjct: 73  CNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Carg06888 vs. TAIR10
Match: AT5G15230.1 (GAST1 protein homolog 4)

HSP 1 Score: 106.7 bits (265), Expect = 9.2e-24
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 8   LLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSFKKPC 67
           L L + FML +     + ++++    S K YG   GSL+  +C   C  RC  T + K C
Sbjct: 11  LTLIVLFMLQTMVMASSGSNVKW---SQKRYG--PGSLKRTQCPSECDRRCKKTQYHKAC 70

Query: 68  MVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           + FC KCC KCLCVPPG YGNKQ+C CYNNWKT+ GGPKCP
Sbjct: 71  ITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

[Close]

BLAST of Carg06888 vs. TAIR10
Match: AT2G39540.1 (Gibberellin-regulated family protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.1e-16
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 50  CGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           CGG+C VRCS     + C+ +C  CC KC CVP GT+G+K  CPCY + K  +GG KCP
Sbjct: 29  CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

[Close]

BLAST of Carg06888 vs. Swiss-Prot
Match: sp|P27057|GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-31
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 35  SKMYGGTQGSLRPEECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPC 94
           +++YG ++G L P++C  +CT RCS TS+KKPCM FC+KCCAKCLCVP GTYGNKQ CPC
Sbjct: 39  NQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPC 98

Query: 95  YNNWKTKRGGPKCP 109
           YNNWKTKRGGPKCP
Sbjct: 99  YNNWKTKRGGPKCP 112

[Close]

BLAST of Carg06888 vs. Swiss-Prot
Match: sp|Q6NMQ7|GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-28
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 4   LSTFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSF 63
           +++FLLL + F  +  T        + A    + YG   GSL+  +CGG+CT RCS T +
Sbjct: 5   ITSFLLLTILFTFVCLT------MSKEAEYHPESYG--PGSLKSYQCGGQCTRRCSNTKY 64

Query: 64  KKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
            KPCM FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKT++GGPKCP
Sbjct: 65  HKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of Carg06888 vs. Swiss-Prot
Match: sp|Q84J95|GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 5   STFLLLCLAFMLLSSTHIQAAASIETAVASSKMYGGTQGSLRPEECGGRCTVRCSATSFK 64
           +    L L F+L  S  +QAA             GG  G L+P++C  +C+ RCSATS K
Sbjct: 8   NALFFLTLLFLLSVSNLVQAAR------------GG--GKLKPQQCNSKCSFRCSATSHK 67

Query: 65  KPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           KPCM FC KCC KCLCVPPGT+GNKQ CPCYNNWKTK G PKCP
Sbjct: 68  KPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

[Close]

BLAST of Carg06888 vs. Swiss-Prot
Match: sp|Q6GKX7|GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana OX=3702 GN=GASA12 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-26
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 16  LLSSTHIQAAASIETAVASSKMY-GGTQGSLRPEECGGRCTVRCSATSFKKPCMVFCRKC 75
           LL +T       +E+   +  ++  G +GSL+PEEC   C  RCSATS +KPC+ FC KC
Sbjct: 13  LLFATQFSNGDELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCLFFCNKC 72

Query: 76  CAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           C KCLCVP GTYG+K+ CPCYNNW TK GGPKCP
Sbjct: 73  CNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Carg06888 vs. Swiss-Prot
Match: sp|P47926|RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.5e-26
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 45  LRPEECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGG 104
           LRP +C  RCT RCSATS KKPCM FC+KCCA CLCVP G YGNKQ CPCYNNWKT+ G 
Sbjct: 33  LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGK 92

Query: 105 PKCP 109
           PKCP
Sbjct: 93  PKCP 96

[Close]

BLAST of Carg06888 vs. TrEMBL
Match: tr|A0A251PR26|A0A251PR26_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G257500 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-34
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAAASIETAVASS----KMYGGTQGSLRPEECGGRCTV 60
           MA   +  +LC+A ++L       A+++ET+        + YG TQGSLRP+ECG RCT 
Sbjct: 1   MAFKLSIFMLCVAALMLVLLEANQASTVETSALQQQENYQPYGTTQGSLRPQECGPRCTT 60

Query: 61  RCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           RCSAT++KKPC+ FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 61  RCSATAYKKPCLFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of Carg06888 vs. TrEMBL
Match: tr|A0A1R3GP63|A0A1R3GP63_COCAP (Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24581 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.0e-34
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLLSSTHIQAA--ASIETAVASSK---MYGGTQGSLRPEECGGRCT 60
           MA   + ++LC   ML+    IQA+  AS +    S+    MYG TQGSLRP+EC  RCT
Sbjct: 1   MAKTLSIVMLCFCLMLVLLGEIQASSPASQKQGQGSNHANGMYGATQGSLRPQECNPRCT 60

Query: 61  VRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
            RCSAT+FKKPCM FC+KCCAKCLCVPPGTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  TRCSATAFKKPCMFFCQKCCAKCLCVPPGTYGNKQYCPCYNNWKTKRGGPKCP 113

[Close]

BLAST of Carg06888 vs. TrEMBL
Match: tr|A9XNT4|A9XNT4_9MYRT (Gibberellin induced protein (Fragment) OS=Sonneratia ovata OX=122816 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLL-------SSTHIQAAASIETAVAS-SKMYGGTQGSLRPEECGG 60
           MA L++ L+L  AF+ +       +S+ + AA  ++      +KMYG ++GSLRP+ECG 
Sbjct: 2   MAKLASILILFAAFLFVLLLDETKASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 61  RCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           RCT RCSATSFKKPCM FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSFKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

[Close]

BLAST of Carg06888 vs. TrEMBL
Match: tr|A9XNT5|A9XNT5_9MYRT (Gibberellin induced protein (Fragment) OS=Sonneratia apetala OX=122813 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLL-------SSTHIQAAASIETAVAS-SKMYGGTQGSLRPEECGG 60
           MA L++ L+L  AF+ +       +S+ + AA  ++      +KMYG ++GSLRP+ECG 
Sbjct: 2   MAKLASILILFAAFLFVLLLDETKASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 61  RCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           RCT RCSATS+KKPCM FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSYKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

[Close]

BLAST of Carg06888 vs. TrEMBL
Match: tr|A9XNT2|A9XNT2_9MYRT (Gibberellin induced protein (Fragment) OS=Sonneratia alba OX=122812 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MATLSTFLLLCLAFMLL-------SSTHIQAAASIETAVAS-SKMYGGTQGSLRPEECGG 60
           MA L++ L+L  AF+ +       +S+ + AA  ++      +KMYG ++GSLRP+ECG 
Sbjct: 2   MAKLASILILFAAFLFVLLLEETEASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 61  RCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 109
           RCT RCSATS+KKPCM FC+KCCAKCLCVPPGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSYKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

The following BLAST results are available for this feature:

BLAST of Carg06888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944307.1	7.5e-56	100.00	gibberellin-regulated protein 5-like [Cucurbita moschata]	[more]
XP_022985831.1	3.7e-55	99.07	protein GAST1-like [Cucurbita maxima]	[more]
XP_023511912.1	5.4e-54	97.22	protein GAST1-like [Cucurbita pepo subsp. pepo] >XP_023511913.1 protein GAST1-li...	[more]
XP_022153040.1	8.9e-41	74.07	protein GAST1-like [Momordica charantia]	[more]
XP_007015173.2	4.7e-34	64.29	PREDICTED: protein GAST1 [Theobroma cacao]	[more]

BLAST of Carg06888 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74670.1	3.3e-29	57.14	Gibberellin-regulated family protein	[more]
AT3G02885.1	6.1e-28	56.73	GAST1 protein homolog 5	[more]
AT2G30810.1	1.8e-27	56.38	Gibberellin-regulated family protein	[more]
AT5G15230.1	9.2e-24	50.50	GAST1 protein homolog 4	[more]
AT2G39540.1	7.1e-16	52.54	Gibberellin-regulated family protein	[more]

BLAST of Carg06888 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P27057\|GAST1_SOLLC	5.7e-31	72.97	Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1	[more]
sp\|Q6NMQ7\|GASA6_ARATH	5.9e-28	57.14	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV...	[more]
sp\|Q84J95\|GASA5_ARATH	1.1e-26	56.73	Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV...	[more]
sp\|Q6GKX7\|GASAC_ARATH	3.2e-26	56.38	Gibberellin-regulated protein 12 OS=Arabidopsis thaliana OX=3702 GN=GASA12 PE=3 ...	[more]
sp\|P47926\|RSI1_SOLLC	5.5e-26	76.56	Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1	[more]

BLAST of Carg06888 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251PR26\|A0A251PR26_PRUPE	5.3e-34	62.50	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G257500 PE=4 SV=1	[more]
tr\|A0A1R3GP63\|A0A1R3GP63_COCAP	7.0e-34	66.37	Gibberellin regulated protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24581...	[more]
tr\|A9XNT4\|A9XNT4_9MYRT	1.5e-33	63.79	Gibberellin induced protein (Fragment) OS=Sonneratia ovata OX=122816 PE=4 SV=1	[more]
tr\|A9XNT5\|A9XNT5_9MYRT	3.5e-33	62.93	Gibberellin induced protein (Fragment) OS=Sonneratia apetala OX=122813 PE=4 SV=1	[more]
tr\|A9XNT2\|A9XNT2_9MYRT	3.5e-33	62.93	Gibberellin induced protein (Fragment) OS=Sonneratia alba OX=122812 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06888-RA	Carg06888-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 49..108 e-value: 1.1E-22 score: 79.9
None	No IPR available	PANTHER	PTHR23201:SF8	GIBBERELLIN-REGULATED PROTEIN 13	coord: 9..108
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 9..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06888	CmaCh20G001000	Cucurbita maxima (Rimu)	carcmaB0732
Carg06888	Cp4.1LG16g08770	Cucurbita pepo (Zucchini)	carcpeB0733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06888	Silver-seed gourd	carcarB463
Carg06888	Silver-seed gourd	carcarB498
Carg06888	Cucumber (Gy14) v2	carcgybB0527
Carg06888	Cucumber (Gy14) v2	carcgybB0530
Carg06888	Cucumber (Gy14) v1	carcgyB0598
Carg06888	Cucurbita maxima (Rimu)	carcmaB0726
Carg06888	Cucurbita maxima (Rimu)	carcmaB0727
Carg06888	Cucurbita maxima (Rimu)	carcmaB0733
Carg06888	Cucurbita moschata (Rifu)	carcmoB0703
Carg06888	Cucurbita moschata (Rifu)	carcmoB0704
Carg06888	Cucurbita moschata (Rifu)	carcmoB0709
Carg06888	Cucurbita moschata (Rifu)	carcmoB0710
Carg06888	Cucurbita pepo (Zucchini)	carcpeB0735
Carg06888	Cucurbita pepo (Zucchini)	carcpeB0740
Carg06888	Cucurbita pepo (Zucchini)	carcpeB0741
Carg06888	Wild cucumber (PI 183967)	carcpiB0558
Carg06888	Wild cucumber (PI 183967)	carcpiB0560
Carg06888	Cucumber (Chinese Long) v2	carcuB0551
Carg06888	Cucumber (Chinese Long) v2	carcuB0553
Carg06888	Cucumber (Chinese Long) v3	carcucB0557
Carg06888	Cucumber (Chinese Long) v3	carcucB0560
Carg06888	Bottle gourd (USVL1VR-Ls)	carlsiB471
Carg06888	Bottle gourd (USVL1VR-Ls)	carlsiB477
Carg06888	Melon (DHL92) v3.5.1	carmeB0527
Carg06888	Melon (DHL92) v3.5.1	carmeB0528
Carg06888	Melon (DHL92) v3.6.1	carmedB0533
Carg06888	Watermelon (Charleston Gray)	carwcgB0503
Carg06888	Watermelon (Charleston Gray)	carwcgB0505
Carg06888	Watermelon (97103) v1	carwmB0516
Carg06888	Watermelon (97103) v1	carwmB0520
Carg06888	Watermelon (97103) v2	carwmbB0543
Carg06888	Watermelon (97103) v2	carwmbB0546
Carg06888	Wax gourd	carwgoB0629
Carg06888	Wax gourd	carwgoB0635