Carg06776 (gene) Silver-seed gourd

Overview
NameCarg06776
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description26S proteasome non-ATPase regulatory subunit 6 homolog
LocationCucurbita_argyrosperma_scaffold_012 : 931688 .. 933460 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGACAGGAGGGAACTCAGCAGCCTCATCTCGTGCTTTCTCACAAGCTCTTCCTTCTAACTCACCCGGATGTTCAAGATATCGAGAAGGTCAATCTTAGGGAGGAAGTATTGGCCTCCGTTAAAGCTGATGGTAATTCGCGGATTGCTTCATACTCTTAATGAGTTTCATCGATTTCGCATTGTGATTTCTGTCTTACGAAATGTGGTTTTTTCTTCTCTGTAATTTGTATTGTGTAGACATGGCTCCTTTATACGAAGCCCTAACCGGAAATTCGCTATTGGATTTGGATCGGAGCGTGTTAGACTCGATGCGTGCGAAAAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGTGAGTTTTTTCATACTATTCTTGATCTGTTTTTGTAAGTGTTCTTTAGTATGAGGGTTATGCAGGAGAGTACATCTGAAGTTCTTTGAATATACGTGAATGTGCATTAAGTTGATTATCCTTGAATTGGCATCGATTTACAGTTCCACTTCCTATCAACACATCGACTTTCAACTTTAGTTAATTCGGAATTTCCATGGATGTGTGAATCTGTTCTATTCGAGGCGCAGTTCTACTTAGCTTCTGGATATTATTCTACCATAACTGACCTTACATTGCTAAATTCCTAATTGATGAAAGGTTATGCTGCTGTTGAATGTTTTGATTTTGTATGGTGACTCTCTGTGGTTCTTTTTGTTTTATAGCAATTGAATATAACGAGTAGGGCACATATGAGTTCAAAATATTGTTGCACGCTGATGGGAACTAGATTTCAGATCTACTAAAATAGATTGAATAACCAACAATACAAGTTGCTAAATGGTGATCTGGTAATTTGAAGAATTTTGAGAACTCCTTCCAGTCGAAATCTATTGTAACTCTCGTTGAGTCCCTTCGCTGCGTTCCTCCTTTATTTAAACAACGCACTTAATGCATACCCACACTGGATATGGATTTGGATTTGAATGGTTGATCTGTATTTCTTGTAGTTAATGGCCACTATTTTTGTAGCTGTTTATGGTGCCATGCTGTTGTGTGTTACTTTATTTATAACTTTTTAAGAGAACAGCAATGTGTGTGTATTTAGCCATTCATCAATCTTGTACTCAGGATTGCTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCCAAATCACTTTTCTTCATTCGTATCGGTGATAAGGTTCGTTAAATCTTTCTCCCCAAGTATTGTAGGGCTGTTCTGCGACTTCCACCTAACGTTCTAGATTTTGACCTCAGGACAGAGCACTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCGGTCGGACTTAAGATGGATTTGGTTTTCCATACTCTAGCACTTCAGGTACTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTCTGGAGTCCTATAAGAGTGTCACAATCAAAGCCATGGCGAATGCATTTGGAGTATCTGTGGAATTTATCGATCTGTAAGTGGTCATGCATGGATACTAATAATCGTCTAAATGATGTCTAAATGATTGTTTTCTCTCATAAAATGTGTTTTTCTGATGGTGCCAGGGAGTTGTCTCGTTTCATTGCTGCGGGAAAACTTCATTGTAAGATCGATAAAGTAGCAGGTGTTCTCGAAACTAATCGTCCTGATTCGAAGAACGCTCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTCAACCGTATCCAGAAGTTGTCTCGTGTCATTGATCTGTAA

mRNA sequence

ATGGAAGGACAGGAGGGAACTCAGCAGCCTCATCTCGTGCTTTCTCACAAGCTCTTCCTTCTAACTCACCCGGATGTTCAAGATATCGAGAAGGTCAATCTTAGGGAGGAAGTATTGGCCTCCGTTAAAGCTGATGACATGGCTCCTTTATACGAAGCCCTAACCGGAAATTCGCTATTGGATTTGGATCGGAGCGTGTTAGACTCGATGCGTGCGAAAAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCCAAATCACTTTTCTTCATTCGTATCGGTGATAAGGACAGAGCACTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCGGTCGGACTTAAGATGGATTTGGTTTTCCATACTCTAGCACTTCAGTTTCTGGAGTCCTATAAGAGTGTCACAATCAAAGCCATGGCGAATGCATTTGGAGTATCTGTGGAATTTATCGATCTGGAGTTGTCTCGTTTCATTGCTGCGGGAAAACTTCATTGTAAGATCGATAAAGTAGCAGGTGTTCTCGAAACTAATCGTCCTGATTCGAAGAACGCTCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTCAACCGTATCCAGAAGTTGTCTCGTGTCATTGATCTGTAA

Coding sequence (CDS)

ATGGAAGGACAGGAGGGAACTCAGCAGCCTCATCTCGTGCTTTCTCACAAGCTCTTCCTTCTAACTCACCCGGATGTTCAAGATATCGAGAAGGTCAATCTTAGGGAGGAAGTATTGGCCTCCGTTAAAGCTGATGACATGGCTCCTTTATACGAAGCCCTAACCGGAAATTCGCTATTGGATTTGGATCGGAGCGTGTTAGACTCGATGCGTGCGAAAAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCCAAATCACTTTTCTTCATTCGTATCGGTGATAAGGACAGAGCACTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCGGTCGGACTTAAGATGGATTTGGTTTTCCATACTCTAGCACTTCAGTTTCTGGAGTCCTATAAGAGTGTCACAATCAAAGCCATGGCGAATGCATTTGGAGTATCTGTGGAATTTATCGATCTGGAGTTGTCTCGTTTCATTGCTGCGGGAAAACTTCATTGTAAGATCGATAAAGTAGCAGGTGTTCTCGAAACTAATCGTCCTGATTCGAAGAACGCTCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTCAACCGTATCCAGAAGTTGTCTCGTGTCATTGATCTGTAA

Protein sequence

MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESKTVAVGLKMDLVFHTLALQFLESYKSVTIKAMANAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDFLLNRIQKLSRVIDL
Homology
[Close]
BLAST of Carg06776 vs. NCBI nr
Match: XP_022994158.1 (26S proteasome non-ATPase regulatory subunit 6 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 224/386 (58.03%), Postives = 225/386 (58.29%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLLTHPDVQDIEKVNLREEVLASVKADDM PLYEALTGNSLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVNLREEVLASVKADDMVPLYEALTGNSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMR KNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRSVLDSMRGKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIEKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. NCBI nr
Match: XP_023542699.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96
Identity = 224/386 (58.03%), Postives = 227/386 (58.81%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL++KLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL
Sbjct: 1   MEGQEGTQQPHLVLANKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDR+VLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRNVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIEKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. NCBI nr
Match: XP_022137498.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia])

HSP 1 Score: 350.9 bits (899), Expect = 3.3e-93
Identity = 218/386 (56.48%), Postives = 222/386 (57.51%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLLTHPDVQDIEKV LREEVLASVKADDMAPLYE L  NSLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLREEVLASVKADDMAPLYETLIANSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMRAKNEEEL+KLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKD+ALEQ
Sbjct: 61  DLDRSVLDSMRAKNEEELRKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDKALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. NCBI nr
Match: XP_022923807.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_023000805.1 26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 3.3e-93
Identity = 219/386 (56.74%), Postives = 222/386 (57.51%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLLTHPDVQDIEKV L EEVLASVKADDMAPLYE LTG+SLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMAPLYETLTGSSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCLSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. NCBI nr
Match: XP_023519947.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 3.3e-93
Identity = 219/386 (56.74%), Postives = 222/386 (57.51%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLLTHPDVQDIEKV L EEVLASVKADDMAPLYE LTG+SLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMAPLYETLTGSSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCLSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. TAIR10
Match: AT4G24820.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain)

HSP 1 Score: 293.9 bits (751), Expect = 8.6e-80
Identity = 184/384 (47.92%), Postives = 208/384 (54.17%), Query Frame = 0 

Query: 3   GQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDL 62
           G EG+QQPHL+L++KLFLLTHPDV DIEKV L+ EVL  +++  MAPLYE L  +S+LDL
Sbjct: 4   GAEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDL 63

Query: 63  DRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLK 122
           D+S+L+SMRA NEEELKKLDEKIADAEENLGESEVREAHLAK+L+FIRI DK++ALEQLK
Sbjct: 64  DQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLK 123

Query: 123 VTESKTVAVGLKMDLVFHTLAL-------------------------------------- 182
           +TE KTVAVG KMD+VF+TL L                                      
Sbjct: 124 LTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEG 183

Query: 183 ------------------------------------------------------------ 229
                                                                       
Sbjct: 184 LYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPE 243

[Close]
BLAST of Carg06776 vs. Swiss-Prot
Match: sp|Q93Y35|PSMD6_ARATH (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN7 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-78
Identity = 184/384 (47.92%), Postives = 208/384 (54.17%), Query Frame = 0 

Query: 3   GQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDL 62
           G EG+QQPHL+L++KLFLLTHPDV DIEKV L+ EVL  +++  MAPLYE L  +S+LDL
Sbjct: 4   GAEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDL 63

Query: 63  DRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLK 122
           D+S+L+SMRA NEEELKKLDEKIADAEENLGESEVREAHLAK+L+FIRI DK++ALEQLK
Sbjct: 64  DQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLK 123

Query: 123 VTESKTVAVGLKMDLVFHTLAL-------------------------------------- 182
           +TE KTVAVG KMD+VF+TL L                                      
Sbjct: 124 LTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEG 183

Query: 183 ------------------------------------------------------------ 229
                                                                       
Sbjct: 184 LYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPE 243

[Close]
BLAST of Carg06776 vs. Swiss-Prot
Match: sp|Q8W425|PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=RPN7 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-75
Identity = 177/384 (46.09%), Postives = 206/384 (53.65%), Query Frame = 0 

Query: 3   GQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDL 62
           G+EG QQPHLVL+HKLFLL+HPDV D+ KV+LR +VLA+VK+DDMA LYE+L    +L+ 
Sbjct: 6   GEEGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLET 65

Query: 63  DRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLK 122
           D ++L  MR + EEE++KLDEKIADAEENLGESEVREAHLAKSL+FIR+G+K++ALEQLK
Sbjct: 66  DAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 125

Query: 123 VTESKTVAVGLKMDLVFHTLAL-------------------------------------- 182
           VTE KTVAVG KMDLVFHTL +                                      
Sbjct: 126 VTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEG 185

Query: 183 ------------------------------------------------------------ 229
                                                                       
Sbjct: 186 LYCMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPE 245

[Close]
BLAST of Carg06776 vs. Swiss-Prot
Match: sp|Q15008|PSMD6_HUMAN (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-39
Identity = 121/379 (31.93%), Postives = 167/379 (44.06%), Query Frame = 0 

Query: 8   QQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDLDRSVL 67
           + P L ++   FLL+ P+ +    V  R+E++A+V+ ++MAP YEAL  +    +D  +L
Sbjct: 13  KNPDLRIAQLRFLLSLPEHRGDAAV--RDELMAAVRDNNMAPYYEALCKSLDWQIDVDLL 72

Query: 68  DSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESK 127
           + M+  NE+ELK+LDE++ DAE+NLGESE+R+A +AK+ +  RIGDK+ AL   + T  K
Sbjct: 73  NKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDK 132

Query: 128 TVAVGLKMDLVFHTLAL------------------------------------------- 187
           TVA+G ++D+VF+ L +                                           
Sbjct: 133 TVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVA 192

Query: 188 ------------------------------------------------------------ 229
                                                                       
Sbjct: 193 IRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVL 252

[Close]
BLAST of Carg06776 vs. Swiss-Prot
Match: sp|Q99JI4|PSMD6_MOUSE (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.4e-39
Identity = 121/379 (31.93%), Postives = 166/379 (43.80%), Query Frame = 0 

Query: 8   QQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDLDRSVL 67
           + P L ++   FLL+ P+ +    V  REE++A+V+ ++MAP YEAL  +    +D  +L
Sbjct: 13  KNPDLRIAQLRFLLSLPEHRGDAAV--REELMAAVRENNMAPYYEALCKSLDWQMDVDLL 72

Query: 68  DSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESK 127
             M+  NEEELK+LDE++ DAE+NLGESE+R+A +AK+ +  +IGDK+ AL   + T  K
Sbjct: 73  SKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDK 132

Query: 128 TVAVGLKMDLVFHTLAL------------------------------------------- 187
           TVA+G ++D+VF+ L +                                           
Sbjct: 133 TVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVA 192

Query: 188 ------------------------------------------------------------ 229
                                                                       
Sbjct: 193 IRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVL 252

[Close]
BLAST of Carg06776 vs. Swiss-Prot
Match: sp|Q3T0B2|PSMD6_BOVIN (26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus OX=9913 GN=PSMD6 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 121/379 (31.93%), Postives = 166/379 (43.80%), Query Frame = 0 

Query: 8   QQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDLDRSVL 67
           + P L ++   FLL+ P+ +    V  R+E++A+V+ ++MAP YEAL  +    +D  +L
Sbjct: 13  KNPDLRIAQLRFLLSLPEHRGDAAV--RDELMAAVRDNNMAPYYEALCKSLEWQMDVDLL 72

Query: 68  DSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESK 127
           + M+  NE+ELK+LDE++ DAE+NLGESE+R+A +AK+ +  RIGDK+ AL   + T  K
Sbjct: 73  NKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDK 132

Query: 128 TVAVGLKMDLVFHTLAL------------------------------------------- 187
           TVA+G ++D+VF+ L +                                           
Sbjct: 133 TVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVA 192

Query: 188 ------------------------------------------------------------ 229
                                                                       
Sbjct: 193 IRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVL 252

[Close]
BLAST of Carg06776 vs. TrEMBL
Match: tr|A0A1S3AZ95|A0A1S3AZ95_CUCME (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucumis melo OX=3656 GN=LOC103484168 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 3.7e-93
Identity = 218/386 (56.48%), Postives = 222/386 (57.51%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLL HPDVQDIEKV L EEVLASVKADDM+PLYE LTG+SLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLIHPDVQDIEKVRLTEEVLASVKADDMSPLYETLTGSSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. TrEMBL
Match: tr|E5GBW6|E5GBW6_CUCME (26S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 3.7e-93
Identity = 218/386 (56.48%), Postives = 222/386 (57.51%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLL HPDVQDIEKV L EEVLASVKADDM+PLYE LTG+SLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLIHPDVQDIEKVRLTEEVLASVKADDMSPLYETLTGSSLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ
Sbjct: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. TrEMBL
Match: tr|A0A0A0LRF8|A0A0A0LRF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050170 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.6e-91
Identity = 215/386 (55.70%), Postives = 220/386 (56.99%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HKLFLLTHPDVQDIEKV L EEVLASVKADDM+PLYE LT  SLL
Sbjct: 1   MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMSPLYETLTSESLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
            LDRSVL+SMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKD+ALEQ
Sbjct: 61  ALDRSVLESMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDKALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVGLKMDLVFHTL L                                    
Sbjct: 121 LKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. TrEMBL
Match: tr|M5WMC9|M5WMC9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G156700 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 6.3e-85
Identity = 202/386 (52.33%), Postives = 216/386 (55.96%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEG QQPHLVL+HKLFLL+HPDVQDIEKV LREEV ASVKADDMAPLYE L   S+L
Sbjct: 1   MEGQEGPQQPHLVLAHKLFLLSHPDVQDIEKVQLREEVFASVKADDMAPLYETLVSESVL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
            LD+SVLDSMRAK ++ELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDK++ALEQ
Sbjct: 61  PLDQSVLDSMRAKIQDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVG KMDLVF+TL L                                    
Sbjct: 121 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYCMSTRNFKKAADLFLDSISTFTTYEIFPYDIFIFYTVLTSIISLDRVSLKQKVVDA 240

[Close]
BLAST of Carg06776 vs. TrEMBL
Match: tr|A0A2C9VQ30|A0A2C9VQ30_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G115400 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84
Identity = 200/386 (51.81%), Postives = 214/386 (55.44%), Query Frame = 0 

Query: 1   MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLL 60
           MEGQEGTQQPHLVL+HK FLLTHPDVQDIEKV L+EEV A+VKADDM PLYE L G  LL
Sbjct: 1   MEGQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKADDMVPLYETLVGEGLL 60

Query: 61  DLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQ 120
           + D SVL+SMRAKNEEELK+L+EKIADAEENLGESEVREAHLAKSLF+IR GDKD+ALEQ
Sbjct: 61  EKDLSVLESMRAKNEEELKRLEEKIADAEENLGESEVREAHLAKSLFYIRTGDKDKALEQ 120

Query: 121 LKVTESKTVAVGLKMDLVFHTLAL------------------------------------ 180
           LKVTESKTVAVG KMDLVF+TL L                                    
Sbjct: 121 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 ------------------------------------------------------------ 229
                                                                       
Sbjct: 181 EGLYFMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

The following BLAST results are available for this feature:
BLAST of Carg06776 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022994158.11.1e-9658.0326S proteasome non-ATPase regulatory subunit 6 [Cucurbita maxima][more]
XP_023542699.11.8e-9658.0326S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pe... [more]
XP_022137498.13.3e-9356.4826S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia][more]
XP_022923807.13.3e-9356.7426S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_... [more]
XP_023519947.13.3e-9356.7426S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pe... [more]
BLAST of Carg06776 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24820.18.6e-8047.9226S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain[more]
BLAST of Carg06776 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q93Y35|PSMD6_ARATH1.5e-7847.9226S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana O... [more]
sp|Q8W425|PSMD6_ORYSJ1.2e-7546.0926S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica O... [more]
sp|Q15008|PSMD6_HUMAN4.1e-3931.9326S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 ... [more]
sp|Q99JI4|PSMD6_MOUSE5.4e-3931.9326S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6... [more]
sp|Q3T0B2|PSMD6_BOVIN2.0e-3831.9326S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus OX=9913 GN=PSMD6 PE... [more]
BLAST of Carg06776 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZ95|A0A1S3AZ95_CUCME3.7e-9356.4826S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucumis melo OX=3656 G... [more]
tr|E5GBW6|E5GBW6_CUCME3.7e-9356.4826S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=4126... [more]
tr|A0A0A0LRF8|A0A0A0LRF8_CUCSA2.6e-9155.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050170 PE=4 SV=1[more]
tr|M5WMC9|M5WMC9_PRUPE6.3e-8552.33Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G156700 PE=4 SV=1[more]
tr|A0A2C9VQ30|A0A2C9VQ30_MANES1.8e-8451.81Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G115400 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR035268PSMD6
IPR019585Rpn7/CSN1
IPR000717PCI_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0030234 enzyme regulator activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06776-RACarg06776-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..98
NoneNo IPR availableSMARTSM00753PINTcoord: 132..212
e-value: 2.3E-12
score: 57.1
NoneNo IPR availableGENE3DG3DSA:1.25.40.570coord: 7..206
e-value: 3.1E-7
score: 31.9
NoneNo IPR availablePANTHERPTHR1414526S PROTESOME SUBUNIT 6coord: 4..145
coord: 145..228
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 132..212
e-value: 2.3E-12
score: 57.1
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 137..196
e-value: 1.2E-9
score: 38.5
IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1PFAMPF10602RPN7coord: 63..152
e-value: 5.2E-19
score: 68.5
IPR03526826S Proteasome non-ATPase regulatory subunit 6PANTHERPTHR14145:SF126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6coord: 4..145
coord: 145..228
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 140..205

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06776Cla002590Watermelon (97103) v1carwmB0489
Carg06776Csa1G050170Cucumber (Chinese Long) v2carcuB0523
Carg06776MELO3C002335Melon (DHL92) v3.5.1carmeB0499
Carg06776ClCG03G003520Watermelon (Charleston Gray)carwcgB0480
Carg06776CSPI01G09220Wild cucumber (PI 183967)carcpiB0531
Carg06776Cucsa.391780Cucumber (Gy14) v1carcgyB0571
Carg06776CmaCh18G002160Cucurbita maxima (Rimu)carcmaB0692
Carg06776CmaCh13G007810Cucurbita maxima (Rimu)carcmaB0689
Carg06776CmoCh18G001920Cucurbita moschata (Rifu)carcmoB0673
Carg06776CmoCh13G008130Cucurbita moschata (Rifu)carcmoB0670
Carg06776Lsi02G004750Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06776Cp4.1LG09g09850Cucurbita pepo (Zucchini)carcpeB0694
Carg06776Cp4.1LG20g03300Cucurbita pepo (Zucchini)carcpeB0698
Carg06776CsGy1G009240Cucumber (Gy14) v2carcgybB0500
Carg06776MELO3C002335.2Melon (DHL92) v3.6.1carmedB0504
Carg06776CsaV3_1G009320Cucumber (Chinese Long) v3carcucB0529
Carg06776Cla97C03G054590Watermelon (97103) v2carwmbB0517
Carg06776Bhi08G001385Wax gourdcarwgoB0601
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06776Carg07577Silver-seed gourdcarcarB481
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06776Cucurbita maxima (Rimu)carcmaB0686
Carg06776Cucurbita maxima (Rimu)carcmaB0688
Carg06776Cucurbita moschata (Rifu)carcmoB0668
Carg06776Cucurbita moschata (Rifu)carcmoB0669
Carg06776Cucurbita pepo (Zucchini)carcpeB0695
Carg06776Cucurbita pepo (Zucchini)carcpeB0699
Carg06776Watermelon (Charleston Gray)carwcgB0483
Carg06776Watermelon (97103) v1carwmB0495
Carg06776Watermelon (97103) v2carwmbB0521
Carg06776Silver-seed gourdcarcarB390
Carg06776Silver-seed gourdcarcarB484