Carg06734 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06734
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glutaredoxin
Location	Cucurbita_argyrosperma_scaffold_012 : 659333 .. 661646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATCTTATTGTTCATCTCTACTTCCAAAATCATACCATTTCTTCAACCTCTCGCGTTTGATCAGATTCAGCGAGGTCATGGGGTCGTGGTTCAGCTCAAACAAATTCTGTAAAGAAGAGCAGAATCAGTCGCTTAACGAGGCCAAGAACATAATCTCCTCTAATCCCGTTGTTGTTTTCAGGTTCTTTCAATAATTTTTCAATATTCCCCTTCTAGGTTTTGATTTGATCTTCCTCGTATGAAGTTCTTATTGATTCTCGCCTCCATTTACTTTTTATCACTATGTTCGATCCTGTGGTAATCAATTACGTGCAAAATGTTCAATGGTTAACTCTTATTGTTAAGAAAATTGGCTCGATTGTTATCGATAGTGAAGATTGAAGAGTTCTTGAAGTTTTGGAAGTTTTGGAAGTTTGTTCTTGTTATGATTCAATAAATCTCTGTTTCGCATGGCAGCAAGACTTACTGTGGGTATTGCTCGAGAGTCAAGGAGTTGCTCACACAGCTTGGAGCTAGTCATAAGGTCATTGAATTGGACCAAAAAAGTAAGTTATAATTTGCGTCTGAGATTCTGCTATAATTTTCCATGCTTTTTCATCTATAAATGTTTGTTCTAGGGCGTTCTTTGATCATGACATGACCTTGTTTATCTTGAATTAGCTGAAAATTGTGATAGAATGATGCTATTTGCCTTCTGTTTCTTCTATAGTGACTGCATAACTGATTGTGACTTATGAACTCTTAGTTGACTGATGAGACTGAAAATTTAAAAGGAGAATTAATTGCAAGTAATACACTTAGTTGATCCTTTTATGGTGTTTATGAGTTCATGTTGCTTGAAGTCAGCACCCTGTTTGTTCATTGGTTTGAGTAAAATAATTGTAAGAGATATTGTCCTGAATTTTTCCTGTCGGGCTTTCCCTCAAGGTTTTAAAACGCGTTTGTTAGAGAGAGGTTTTCATACCCTTATAAAAAATGTTTTGTTCTTCGTTATGCTCTCCAACTGATGTGGAATCTCATAATTCACCCCCTTTGGGGCCAGCATCCTCGCTAGCACTCGTTCCCCTCTTCGATCAATGTGGGATCTCACAGTCCACCCCCCTTCAAGGTCCAGCATCCTCGTTGGCACTCGTTTCCCTCTCCAATCGATGTCGTTCCCCTCTCCAATCAATGTGAGATCTCACAATCCACCTTCCTCTGGGCCCAACGTCTTTGCTGACACTCGTTTTCCTCTTTATGATGTTGTTTCTCTCTCCAATCAATGTGGGATCTCACAATCCACCCTTCTTTGGAGCCCAGTGTTCTCGCTAGCATTCGTTCCTCTCTCATCGATGTAGGATCTCACATCAATCAATGTTGAGGTCAGATTTTATATGAATCATTTCGCATAACAAAACATGAAGATGTGAAATTGAATGTTTCTCTGTTGAGACAAGCTGTGTGTTTGCCTAATTCTCGTGTTGCTACAATCTCGATCAGTACCATTTGAATATTGATGATTGTGTTGTATAATTACCTCAAAACAAGTTCTTTGAGCTGCCTGTGACTGTTCTTCAAACATTATATTGATGAATTCATCCATATGAAGGTGATGGAGATGCAATTCAATCAGCTTTAGCAGAGTGGACGGGTCAAACCTCGGTGCCTAACGTGTTTATCGGAGGAAAACACATCGGTGGTTGCGATGGTAACACCTGCCGACTTCATTGCATAAATAGCTACCTTGTGGCTGCTTCTCCCAAATTTTGCTCATCCTCTATCTCCATTTGTGTCATTGCAGCGGTCACAAATAAGCACAGCAGTGGTCAGCTGGTGCCACTTCTTGCTGATGCTGGTGCCATCGCCAATAACTCTGCTCAGCTGTGAACATTGCTTCACTGCTTCACTACGTAGCAATGAAGCAAATGTTTGTTGGTGTCTTCCAGATTTAATTTACAAAAACAGGTATAAATGTTCATGTTTTAGAATCTGTGTTGAAAGATTGTACATTGTGCTTTAAAAATGGTTTGAAAGTGTAGTAGGGTTGGGATCAAGTCAGGATAGGGTAGGGTCGGGACCCTTTATGTGTGAGATAGGGTCGGGATCGGGGATGGAGAATGTAATCCCCGTCCCCGGCGCTGTGTAGCTAACAAGGAGAAATCTTTCTCCACTCCCTTCTTGTTCCCATGTTTAAGCGAGATTCCTAGGAACGGGATTCCTAGAGGTGGGTTCCCGCAGGTTAAATAAACATATCTAATTAAAACTTTGAATTTATAACTGTATGAGTTTACATCCTTCGTTAGATTCTGTTAAAAAAAAACGTTAGTGTACA

mRNA sequence

TTTTATCTTATTGTTCATCTCTACTTCCAAAATCATACCATTTCTTCAACCTCTCGCGTTTGATCAGATTCAGCGAGGTCATGGGGTCGTGGTTCAGCTCAAACAAATTCTGTAAAGAAGAGCAGAATCAGTCGCTTAACGAGGCCAAGAACATAATCTCCTCTAATCCCGTTGTTGTTTTCAGCAAGACTTACTGTGGGTATTGCTCGAGAGTCAAGGAGTTGCTCACACAGCTTGGAGCTAGTCATAAGGTCATTGAATTGGACCAAAAAAGTGATGGAGATGCAATTCAATCAGCTTTAGCAGAGTGGACGGGTCAAACCTCGGTGCCTAACGTGTTTATCGGAGGAAAACACATCGGTGGTTGCGATGCGGTCACAAATAAGCACAGCAGTGGTCAGCTGGTGCCACTTCTTGCTGATGCTGGTGCCATCGCCAATAACTCTGCTCAGCTGTGAACATTGCTTCACTGCTTCACTACGTAGCAATGAAGCAAATGTTTGTTGGTGTCTTCCAGATTTAATTTACAAAAACAGGTATAAATGTTCATGTTTTAGAATCTGTGTTGAAAGATTGTACATTGTGCTTTAAAAATGGTTTGAAAGTGTAGTAGGGTTGGGATCAAGTCAGGATAGGGTAGGGTCGGGACCCTTTATGTGTGAGATAGGGTCGGGATCGGGGATGGAGAATGTAATCCCCGTCCCCGGCGCTGTGTAGCTAACAAGGAGAAATCTTTCTCCACTCCCTTCTTGTTCCCATGTTTAAGCGAGATTCCTAGGAACGGGATTCCTAGAGGTGGGTTCCCGCAGGTTAAATAAACATATCTAATTAAAACTTTGAATTTATAACTGTATGAGTTTACATCCTTCGTTAGATTCTGTTAAAAAAAAACGTTAGTGTACA

Coding sequence (CDS)

ATGGGGTCGTGGTTCAGCTCAAACAAATTCTGTAAAGAAGAGCAGAATCAGTCGCTTAACGAGGCCAAGAACATAATCTCCTCTAATCCCGTTGTTGTTTTCAGCAAGACTTACTGTGGGTATTGCTCGAGAGTCAAGGAGTTGCTCACACAGCTTGGAGCTAGTCATAAGGTCATTGAATTGGACCAAAAAAGTGATGGAGATGCAATTCAATCAGCTTTAGCAGAGTGGACGGGTCAAACCTCGGTGCCTAACGTGTTTATCGGAGGAAAACACATCGGTGGTTGCGATGCGGTCACAAATAAGCACAGCAGTGGTCAGCTGGTGCCACTTCTTGCTGATGCTGGTGCCATCGCCAATAACTCTGCTCAGCTGTGA

Protein sequence

MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIANNSAQL

Homology

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BLAST of Carg06734 vs. NCBI nr
Match: XP_022954603.1 (glutaredoxin [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 2.3e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE
Sbjct: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN
Sbjct: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 125

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BLAST of Carg06734 vs. NCBI nr
Match: XP_023542540.1 (glutaredoxin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKF KEEQNQSLNEAK IISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE
Sbjct: 1   MGSWFSSNKFSKEEQNQSLNEAKKIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQL+PLLA AGAIAN
Sbjct: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLMPLLAAAGAIAN 120

Query: 121 NSAQL 126
           +SAQL
Sbjct: 121 DSAQL 125

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BLAST of Carg06734 vs. NCBI nr
Match: XP_022994680.1 (glutaredoxin [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-59
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKF KEEQNQSLNEAK IISSNPVVVFSKTYCGYCSRVK+LLTQLGASHKVIE
Sbjct: 1   MGSWFSSNKFSKEEQNQSLNEAKQIISSNPVVVFSKTYCGYCSRVKKLLTQLGASHKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQKSDGDAIQSALAEWTGQT+VPNVFIGGKHIGGCDAVTNK SSGQLVPLLA AGAIAN
Sbjct: 61  LDQKSDGDAIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTNKQSSGQLVPLLAAAGAIAN 120

Query: 121 NSAQL 126
           +SAQL
Sbjct: 121 DSAQL 125

[Close]

BLAST of Carg06734 vs. NCBI nr
Match: XP_022137238.1 (glutaredoxin-C1 [Momordica charantia])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNK  KEE   +LNEAK IISS+PVVVFSKTYCG+C+RVK+LLTQLGAS+KVIE
Sbjct: 1   MGSWFSSNKKSKEELEMALNEAKKIISSHPVVVFSKTYCGFCTRVKQLLTQLGASYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQ+SDGD IQSAL EWTGQ++VPNVFIGGKHIGGCDAVT KH+ GQLVPLL DAGAIAN
Sbjct: 61  LDQQSDGDTIQSALEEWTGQSTVPNVFIGGKHIGGCDAVTEKHNRGQLVPLLTDAGAIAN 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 125

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BLAST of Carg06734 vs. NCBI nr
Match: NP_001274139.1 (glutaredoxin [Cucumis sativus] >AGX01494.1 glutaredoxin [Cucumis sativus] >KGN64321.1 hypothetical protein Csa_1G046180 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 4.9e-51
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKF KEE   +LNE K I+S++PVVVFSKTYCG+CS VK+LLTQLGA +KVIE
Sbjct: 1   MGSWFSSNKFSKEELELALNEVKKIVSTDPVVVFSKTYCGFCSSVKKLLTQLGARYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQKSDGD IQSALAEWTGQT+VPNVFIGGKHIGGCDAVT KH  GQLVPLL +AGAIA 
Sbjct: 61  LDQKSDGDKIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTEKHHRGQLVPLLTEAGAIAG 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 125

[Close]

BLAST of Carg06734 vs. TAIR10
Match: AT5G63030.1 (Thioredoxin superfamily protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-44
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGS FS N+  KEE    +N+AK I+S+ PVVVFSKTYCGYC RVK+LLTQLGA+ KV+E
Sbjct: 1   MGSMFSGNRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LD+ SDG  IQSAL+EWTGQT+VPNVFI G HIGGCD V   +  G+LVPLL +AGAIA+
Sbjct: 61  LDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIAD 120

Query: 121 NSAQL 126
           NS+QL
Sbjct: 121 NSSQL 125

[Close]

BLAST of Carg06734 vs. TAIR10
Match: AT5G40370.2 (Glutaredoxin family protein)

HSP 1 Score: 134.0 bits (336), Expect = 6.2e-32
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 33  VFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTSVPNVFIGGKH 92
           + SKTYC YC RVKELL QLGA  K +ELD +SDG  IQS LAEWTGQ +VPNVFIGG H
Sbjct: 42  ICSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNH 101

Query: 93  IGGCDAVTNKHSSGQLVPLLADAGAIANNSA 124
           IGGCDA +N H  G+LVPLL +AGAIA  +A
Sbjct: 102 IGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 132

[Close]

BLAST of Carg06734 vs. TAIR10
Match: AT1G77370.1 (Glutaredoxin family protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-20
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 23  KNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTS 82
           +N I SN +V+FSK+YC YC R K + +QL     V+ELDQ+ DGD IQ  L E+ G+ +
Sbjct: 38  QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRT 97

Query: 83  VPNVFIGGKHIGGCDAVTNKHSSGQLVPLLA 114
           VP VF+ GKHIGG D +     SGQL  LLA
Sbjct: 98  VPQVFVNGKHIGGSDDLGAALESGQLQKLLA 128

[Close]

BLAST of Carg06734 vs. TAIR10
Match: AT5G20500.1 (Glutaredoxin family protein)

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-20
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 23  KNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTS 82
           K  ISS+ +V+FSK+YC YC + K +  +L     V+ELD++ DG +IQ+AL E  G+ +
Sbjct: 36  KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRT 95

Query: 83  VPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIANNSAQL 126
           VP VFI GKH+GG D   + + SG+L  LL   G   N  A+L
Sbjct: 96  VPQVFINGKHLGGSDDTVDAYESGELAKLL---GVSGNKEAEL 135

[Close]

BLAST of Carg06734 vs. TAIR10
Match: AT2G20270.2 (Thioredoxin superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 5.1e-18
Identity = 48/121 (39.67%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 23  KNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQ------------------- 82
           K  ++ NPVVV+SKT+C Y S+VK L   L     V+ELDQ                   
Sbjct: 79  KTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLVSLGKTSLPHDIGLKHLQ 138

Query: 83  ---------KSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLAD 116
                     S+G  +Q+ L + TGQ +VPNVFIGGKHIGGC      H+ G+L  +LA+
Sbjct: 139 KFWWFLAFPGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAE 198

[Close]

BLAST of Carg06734 vs. Swiss-Prot
Match: sp|Q8L8T2|GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana OX=3702 GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-43
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGS FS N+  KEE    +N+AK I+S+ PVVVFSKTYCGYC RVK+LLTQLGA+ KV+E
Sbjct: 1   MGSMFSGNRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LD+ SDG  IQSAL+EWTGQT+VPNVFI G HIGGCD V   +  G+LVPLL +AGAIA+
Sbjct: 61  LDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIAD 120

Query: 121 NSAQL 126
           NS+QL
Sbjct: 121 NSSQL 125

[Close]

BLAST of Carg06734 vs. Swiss-Prot
Match: sp|P55143|GLRX_RICCO (Glutaredoxin OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-36
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 18  SLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEW 77
           ++ + K ++SSN VVVFSKTYC YC+ VK+LL QLGA +KV+ELD +SDG  IQ+ALAEW
Sbjct: 2   AMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEW 61

Query: 78  TGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAI 119
           TGQ +VPNVFIGGKHIGGCD+ T KHS GQLVPLL +AGA+
Sbjct: 62  TGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102

[Close]

BLAST of Carg06734 vs. Swiss-Prot
Match: sp|Q9FNE2|GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana OX=3702 GN=GRXC2 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-35
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 18  SLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEW 77
           ++ +AK I++S  VVVFSKTYC YC RVKELL QLGA  K +ELD +SDG  IQS LAEW
Sbjct: 2   AMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEW 61

Query: 78  TGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIANNSA 124
           TGQ +VPNVFIGG HIGGCDA +N H  G+LVPLL +AGAIA  +A
Sbjct: 62  TGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107

[Close]

BLAST of Carg06734 vs. Swiss-Prot
Match: sp|Q9ZR41|GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 18  SLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEW 77
           SL +AK I+S NPV VFSKTYC +C  VK+LL++LGA+ K +ELD + DG  IQ+ALAEW
Sbjct: 2   SLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEW 61

Query: 78  TGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIANNS 123
           TGQ +VPNVFIG KHIGGCDA T  H  G+L+PLL +AGAIA  S
Sbjct: 62  TGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106

[Close]

BLAST of Carg06734 vs. Swiss-Prot
Match: sp|O81187|GLRX_VERFO (Glutaredoxin OS=Vernicia fordii OX=73154 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 21  EAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQ 80
           +A+ ++SSN VVVFSKT+C YC+ VK+LL QLGA  KVIELD +SDG  +Q+ALAEWTGQ
Sbjct: 5   KAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQ 64

Query: 81  TSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAI 119
            +VPNVFIGGKHIGGCD  T  H  G+L+PLL +AGA+
Sbjct: 65  RTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102

[Close]

BLAST of Carg06734 vs. TrEMBL
Match: tr|U3RGD2|U3RGD2_CUCSA (Glutaredoxin OS=Cucumis sativus OX=3659 GN=GRX2 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.3e-51
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKF KEE   +LNE K I+S++PVVVFSKTYCG+CS VK+LLTQLGA +KVIE
Sbjct: 1   MGSWFSSNKFSKEELELALNEVKKIVSTDPVVVFSKTYCGFCSSVKKLLTQLGARYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LDQKSDGD IQSALAEWTGQT+VPNVFIGGKHIGGCDAVT KH  GQLVPLL +AGAIA 
Sbjct: 61  LDQKSDGDKIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTEKHHRGQLVPLLTEAGAIAG 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 125

[Close]

BLAST of Carg06734 vs. TrEMBL
Match: tr|A0A1S3AWQ0|A0A1S3AWQ0_CUCME (glutaredoxin OS=Cucumis melo OX=3656 GN=LOC103483635 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.2e-49
Identity = 99/125 (79.20%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGSWFSSNKF KEE   +LNE K IIS++PVVVFSKTYCG+CS VK+LLTQLGA +KVIE
Sbjct: 1   MGSWFSSNKFSKEELEVALNEVKKIISTDPVVVFSKTYCGFCSSVKKLLTQLGARYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           L+Q+S+GD IQSALAEWTGQT+VPNVFIGGKHIGGCDAVT KH  GQLVPLL +AGAIA 
Sbjct: 61  LNQESNGDKIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTEKHHRGQLVPLLTEAGAIAG 120

Query: 121 NSAQL 126
           NSA L
Sbjct: 121 NSAPL 125

[Close]

BLAST of Carg06734 vs. TrEMBL
Match: tr|A0A2P4J9B7|A0A2P4J9B7_QUESU (Glutaredoxin-c1 OS=Quercus suber OX=58331 GN=CFP56_45231 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.6e-45
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGS FSS K  KEE   +LN+AK I+SSNPVVVFSKTYCGYC RVK+L TQLGAS+K+IE
Sbjct: 1   MGSVFSS-KISKEELEMALNKAKEIVSSNPVVVFSKTYCGYCKRVKQLFTQLGASYKIIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LD++ DG  IQSALAEWTGQ +VPNVFIGGKHIGGCD +  K+ +GQLVPLL +AGAIAN
Sbjct: 61  LDEERDGSDIQSALAEWTGQRTVPNVFIGGKHIGGCDTIMEKYQAGQLVPLLTEAGAIAN 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 124

[Close]

BLAST of Carg06734 vs. TrEMBL
Match: tr|A0A2N9IXQ4|A0A2N9IXQ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58039 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.8e-45
Identity = 92/125 (73.60%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGS FSSNK  KEE   +LN+AK IISS PVVVFSKTYCGYC+RVK+LLTQ+GA++KVIE
Sbjct: 1   MGSMFSSNKKTKEELEMALNKAKEIISSTPVVVFSKTYCGYCTRVKQLLTQVGATYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LD++SDG  IQ ALAEWTG  +VPNVFIGGKHIGGCD V  K+ +GQL PLL +AGAIAN
Sbjct: 61  LDEESDGSDIQLALAEWTGLKTVPNVFIGGKHIGGCDTVVEKYQAGQLAPLLTEAGAIAN 120

Query: 121 NSAQL 126
           N+AQL
Sbjct: 121 NTAQL 125

[Close]

BLAST of Carg06734 vs. TrEMBL
Match: tr|A0A1S2YBK7|A0A1S2YBK7_CICAR (glutaredoxin OS=Cicer arietinum OX=3827 GN=LOC101493651 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-43
Identity = 90/125 (72.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MGSWFSSNKFCKEEQNQSLNEAKNIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIE 60
           MGS  SS++  +EE   +LN+AKN+ +S+PV VFSKTYCGYC RVK+L  QLGAS+KVIE
Sbjct: 1   MGSMLSSSQKSQEEIEMALNKAKNLAASSPVFVFSKTYCGYCKRVKDLFKQLGASYKVIE 60

Query: 61  LDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLVPLLADAGAIAN 120
           LD +SDG  IQ+ALAEWTGQ +VPNVFIGGKHIGGCD+V  KH +GQLVPLL DAGAIAN
Sbjct: 61  LDTESDGGEIQAALAEWTGQRTVPNVFIGGKHIGGCDSVLEKHRAGQLVPLLNDAGAIAN 120

Query: 121 NSAQL 126
           NSAQL
Sbjct: 121 NSAQL 125

The following BLAST results are available for this feature:

BLAST of Carg06734 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954603.1	2.3e-64	100.00	glutaredoxin [Cucurbita moschata]	[more]
XP_023542540.1	1.2e-60	96.00	glutaredoxin [Cucurbita pepo subsp. pepo]	[more]
XP_022994680.1	2.9e-59	94.40	glutaredoxin [Cucurbita maxima]	[more]
XP_022137238.1	3.4e-52	83.20	glutaredoxin-C1 [Momordica charantia]	[more]
NP_001274139.1	4.9e-51	81.60	glutaredoxin [Cucumis sativus] >AGX01494.1 glutaredoxin [Cucumis sativus] >KGN64...	[more]

BLAST of Carg06734 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63030.1	1.4e-44	68.00	Thioredoxin superfamily protein	[more]
AT5G40370.2	6.2e-32	69.23	Glutaredoxin family protein	[more]
AT1G77370.1	1.9e-20	51.65	Glutaredoxin family protein	[more]
AT5G20500.1	7.1e-20	44.66	Glutaredoxin family protein	[more]
AT2G20270.2	5.1e-18	39.67	Thioredoxin superfamily protein	[more]

BLAST of Carg06734 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L8T2\|GRXC1_ARATH	2.6e-43	68.00	Glutaredoxin-C1 OS=Arabidopsis thaliana OX=3702 GN=GRXC1 PE=2 SV=2	[more]
sp\|P55143\|GLRX_RICCO	1.8e-36	69.31	Glutaredoxin OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
sp\|Q9FNE2\|GRXC2_ARATH	2.0e-35	66.98	Glutaredoxin-C2 OS=Arabidopsis thaliana OX=3702 GN=GRXC2 PE=3 SV=1	[more]
sp\|Q9ZR41\|GLRX_SOLLC	1.1e-33	64.76	Glutaredoxin OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
sp\|O81187\|GLRX_VERFO	1.1e-33	66.33	Glutaredoxin OS=Vernicia fordii OX=73154 PE=3 SV=1	[more]

BLAST of Carg06734 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|U3RGD2\|U3RGD2_CUCSA	3.3e-51	81.60	Glutaredoxin OS=Cucumis sativus OX=3659 GN=GRX2 PE=2 SV=1	[more]
tr\|A0A1S3AWQ0\|A0A1S3AWQ0_CUCME	5.2e-49	79.20	glutaredoxin OS=Cucumis melo OX=3656 GN=LOC103483635 PE=4 SV=1	[more]
tr\|A0A2P4J9B7\|A0A2P4J9B7_QUESU	4.6e-45	74.40	Glutaredoxin-c1 OS=Quercus suber OX=58331 GN=CFP56_45231 PE=4 SV=1	[more]
tr\|A0A2N9IXQ4\|A0A2N9IXQ4_FAGSY	7.8e-45	73.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58039 PE=4 SV=1	[more]
tr\|A0A1S2YBK7\|A0A1S2YBK7_CICAR	1.9e-43	72.00	glutaredoxin OS=Cicer arietinum OX=3827 GN=LOC101493651 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR002109	Glutaredoxin
IPR011899	Glutaredoxin_euk/vir
IPR014025	Glutaredoxin_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06734-RA	Carg06734-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 76..89 score: 52.68 coord: 90..103 score: 40.48 coord: 31..49 score: 50.22
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 10..125 e-value: 1.2E-42 score: 146.0
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 1..123
None	No IPR available	PANTHER	PTHR10168:SF73	GLUTAREDOXIN-C1	coord: 1..123
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 30..111 e-value: 3.94492E-45 score: 142.679
IPR011899	Glutaredoxin, eukaryotic/virial	TIGRFAM	TIGR02180	TIGR02180	coord: 31..111 e-value: 2.7E-29 score: 99.2
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 31..93 e-value: 3.1E-20 score: 72.1
IPR002109	Glutaredoxin	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 19..119 score: 25.251
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 20..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06734	Cla003456	Watermelon (97103) v1	carwmB0492
Carg06734	Csa1G046180	Cucumber (Chinese Long) v2	carcuB0523
Carg06734	MELO3C002276	Melon (DHL92) v3.5.1	carmeB0499
Carg06734	ClCG01G013260	Watermelon (Charleston Gray)	carwcgB0477
Carg06734	CSPI01G08600	Wild cucumber (PI 183967)	carcpiB0531
Carg06734	Cucsa.098540	Cucumber (Gy14) v1	carcgyB0567
Carg06734	CmaCh18G001780	Cucurbita maxima (Rimu)	carcmaB0692
Carg06734	CmoCh18G001360	Cucurbita moschata (Rifu)	carcmoB0673
Carg06734	Lsi02G003820	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06734	Cp4.1LG09g10220	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06734	CsGy1G008510	Cucumber (Gy14) v2	carcgybB0500
Carg06734	MELO3C002276.2	Melon (DHL92) v3.6.1	carmedB0504
Carg06734	CsaV3_1G008620	Cucumber (Chinese Long) v3	carcucB0529
Carg06734	Cla97C01G012280	Watermelon (97103) v2	carwmbB0514
Carg06734	Cla97C09G180580	Watermelon (97103) v2	carwmbB0522
Carg06734	Bhi06G000444	Wax gourd	carwgoB0597
Carg06734	Bhi08G001325	Wax gourd	carwgoB0601

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06734	Carg02313	Silver-seed gourd	carcarB300

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06734	Melon (DHL92) v3.5.1	carmeB0500
Carg06734	Melon (DHL92) v3.6.1	carmedB0505
Carg06734	Watermelon (Charleston Gray)	carwcgB0482
Carg06734	Watermelon (Charleston Gray)	carwcgB0484
Carg06734	Watermelon (97103) v1	carwmB0490
Carg06734	Watermelon (97103) v1	carwmB0494
Carg06734	Watermelon (97103) v2	carwmbB0520
Carg06734	Silver-seed gourd	carcarB389
Carg06734	Silver-seed gourd	carcarB482
Carg06734	Silver-seed gourd	carcarB479
Carg06734	Silver-seed gourd	carcarB481
Carg06734	Cucurbita maxima (Rimu)	carcmaB0686
Carg06734	Cucurbita maxima (Rimu)	carcmaB0688
Carg06734	Cucurbita maxima (Rimu)	carcmaB0689
Carg06734	Cucurbita maxima (Rimu)	carcmaB0690
Carg06734	Cucurbita moschata (Rifu)	carcmoB0667
Carg06734	Cucurbita moschata (Rifu)	carcmoB0669
Carg06734	Cucurbita moschata (Rifu)	carcmoB0670
Carg06734	Cucurbita moschata (Rifu)	carcmoB0671
Carg06734	Cucurbita pepo (Zucchini)	carcpeB0695
Carg06734	Cucurbita pepo (Zucchini)	carcpeB0696
Carg06734	Cucurbita pepo (Zucchini)	carcpeB0698
Carg06734	Cucurbita pepo (Zucchini)	carcpeB0699
Carg06734	Wild cucumber (PI 183967)	carcpiB0532
Carg06734	Cucumber (Chinese Long) v3	carcucB0530
Carg06734	Bottle gourd (USVL1VR-Ls)	carlsiB448