Carg06516 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06516
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dicer-like 103
Location	Cucurbita_argyrosperma_scaffold_051 : 1063368 .. 1063783 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGAGATTGTGGAGAAGATTTGGAATGCTATGGAAAACCTCAAACAAGAAAGAAAATAGCAGCAGAGGATGCGGCAGAAGGAGCAGTATGGTATTTAAAGCATTTGGGGTATGGTATTTAAGAATAATTAAGGGAATTGTAAAGAGCTAGAAATGGGAAATGAGTGATCATTTCCAACCCAAGACTCTTTTTCAGGGCATAAAATTATTTTCCAATTGCTAGAAAAGAATTCCATATTCTATATCCAATCTTCTCATATCTTTTTGTCACCCCTAATCAAGTAAGTGGGTGGGTAGGAAGGATCATGACTATGAGCCATGTTCATTTATTATCACGTCTGCCTTAGTTTTCCTTGTGGCTGGATCGTTCATTAAGAATTGCTCTTGGGGTCACCACCCTGTACTACTATGA

mRNA sequence

ATGAAGGGAGATTGTGGAGAAGATTTGGAATGCTATGGAAAACCTCAAACAAGAAAGAAAATAGCAGCAGAGGATGCGGCAGAAGGAGCAGTATGGTATTTAAAGCATTTGGGGTATGTTTTCCTTGTGGCTGGATCGTTCATTAAGAATTGCTCTTGGGGTCACCACCCTGTACTACTATGA

Coding sequence (CDS)

ATGAAGGGAGATTGTGGAGAAGATTTGGAATGCTATGGAAAACCTCAAACAAGAAAGAAAATAGCAGCAGAGGATGCGGCAGAAGGAGCAGTATGGTATTTAAAGCATTTGGGGTATGTTTTCCTTGTGGCTGGATCGTTCATTAAGAATTGCTCTTGGGGTCACCACCCTGTACTACTATGA

Protein sequence

MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVFLVAGSFIKNCSWGHHPVLL

Homology

[Close]

BLAST of Carg06516 vs. NCBI nr
Match: XP_022956287.1 (ribonuclease 3-like protein 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Sbjct: 176 MKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 214

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BLAST of Carg06516 vs. NCBI nr
Match: XP_022956286.1 (ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Sbjct: 179 MKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 217

[Close]

BLAST of Carg06516 vs. NCBI nr
Match: XP_022956288.1 (ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956289.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956290.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Sbjct: 158 MKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 196

[Close]

BLAST of Carg06516 vs. NCBI nr
Match: XP_023528856.1 (endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528857.1 endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528858.1 endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Sbjct: 158 MKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 196

[Close]

BLAST of Carg06516 vs. NCBI nr
Match: XP_022980075.1 (ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980076.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980077.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           MKG CGEDLECYG PQTRKK+AAEDAAEGAVWYLKHLGY
Sbjct: 158 MKGACGEDLECYGNPQTRKKVAAEDAAEGAVWYLKHLGY 196

[Close]

BLAST of Carg06516 vs. TAIR10
Match: AT4G00420.2 (Double-stranded RNA-binding domain (DsRBD)-containing protein)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-08
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           LEC+G PQ +KKIAAE AAE A+WYLK++GY
Sbjct: 133 LECFGNPQYKKKIAAEQAAEAALWYLKNVGY 163

[Close]

BLAST of Carg06516 vs. TAIR10
Match: AT1G80650.1 (RNAse THREE-like protein 1)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHL 38
           LEC+G P+ +KK AAE AAEGA+WYL+H+
Sbjct: 164 LECFGDPRRKKKAAAEHAAEGALWYLEHV 192

[Close]

BLAST of Carg06516 vs. TAIR10
Match: AT5G20320.1 (dicer-like 4)

HSP 1 Score: 43.9 bits (102), Expect = 4.1e-05
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 9    LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV 41
            LECYG+ +  KK AAE AA+ A+W LKH G++
Sbjct: 1670 LECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1701

[Close]

BLAST of Carg06516 vs. Swiss-Prot
Match: sp|Q9M8N2|RTL1_ARATH (Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-05
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHL 38
           LEC+G P+ +KK AAE AAEGA+WYL+H+
Sbjct: 164 LECFGDPRRKKKAAAEHAAEGALWYLEHV 192

[Close]

BLAST of Carg06516 vs. Swiss-Prot
Match: sp|P84634|DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-04
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 9    LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV 41
            LECYG+ +  KK AAE AA+ A+W LKH G++
Sbjct: 1670 LECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1701

[Close]

BLAST of Carg06516 vs. TrEMBL
Match: tr|A0A0A0KYI7|A0A0A0KYI7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-09
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVF 42
           MKGDC   +ECYG  QTRKK+AAE AAEGA+WYL HLGY F
Sbjct: 185 MKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRF 225

[Close]

BLAST of Carg06516 vs. TrEMBL
Match: tr|A0A1S3BXK0|A0A1S3BXK0_CUCME (uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVF 42
           MKGDC   +ECYG  QTRKK+AAE AAEGA+WYLK+LGY F
Sbjct: 186 MKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRF 226

[Close]

BLAST of Carg06516 vs. TrEMBL
Match: tr|A0A2I4GKA7|A0A2I4GKA7_9ROSI (ribonuclease 3-like protein 1 OS=Juglans regia OX=51240 GN=LOC109008618 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           LEC+G PQ +KK AAE AAEGA+WYLKH+GY
Sbjct: 170 LECFGAPQLKKKTAAEQAAEGALWYLKHIGY 200

[Close]

BLAST of Carg06516 vs. TrEMBL
Match: tr|V4SUF1|V4SUF1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026528mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           LEC+G PQ++KK AAE AAEGA+WYL+HLGY
Sbjct: 162 LECFGAPQSKKKTAAEHAAEGALWYLEHLGY 192

[Close]

BLAST of Carg06516 vs. TrEMBL
Match: tr|A0A2H5QTC6|A0A2H5QTC6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_259890 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 9   LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY 40
           LEC+G PQ++KK AAE AAEGA+WYL+HLGY
Sbjct: 162 LECFGAPQSKKKTAAEHAAEGALWYLEHLGY 192

The following BLAST results are available for this feature:

BLAST of Carg06516 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956287.1	7.9e-15	97.44	ribonuclease 3-like protein 1 isoform X2 [Cucurbita moschata]	[more]
XP_022956286.1	7.9e-15	97.44	ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata]	[more]
XP_022956288.1	7.9e-15	97.44	ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956289.1 ri...	[more]
XP_023528856.1	7.9e-15	97.44	endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528857...	[more]
XP_022980075.1	2.6e-13	92.31	ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980076.1 ribo...	[more]

BLAST of Carg06516 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00420.2	3.9e-08	70.97	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]
AT1G80650.1	1.3e-06	65.52	RNAse THREE-like protein 1	[more]
AT5G20320.1	4.1e-05	56.25	dicer-like 4	[more]

BLAST of Carg06516 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M8N2\|RTL1_ARATH	2.3e-05	65.52	Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1	[more]
sp\|P84634\|DCL4_ARATH	7.3e-04	56.25	Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2	[more]

BLAST of Carg06516 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYI7\|A0A0A0KYI7_CUCSA	7.3e-09	73.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1	[more]
tr\|A0A1S3BXK0\|A0A1S3BXK0_CUCME	2.1e-08	73.17	uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4GKA7\|A0A2I4GKA7_9ROSI	1.3e-05	74.19	ribonuclease 3-like protein 1 OS=Juglans regia OX=51240 GN=LOC109008618 PE=4 SV=...	[more]
tr\|V4SUF1\|V4SUF1_9ROSI	1.7e-05	74.19	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026528mg PE=4 ...	[more]
tr\|A0A2H5QTC6\|A0A2H5QTC6_CITUN	1.7e-05	74.19	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_259890 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06516-RA	Carg06516-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06516	Cla012730	Watermelon (97103) v1	carwmB0120
Carg06516	Csa4G006230	Cucumber (Chinese Long) v2	carcuB0128
Carg06516	MELO3C017858	Melon (DHL92) v3.5.1	carmeB0127
Carg06516	ClCG07G012380	Watermelon (Charleston Gray)	carwcgB0121
Carg06516	CSPI04G01790	Wild cucumber (PI 183967)	carcpiB0133
Carg06516	Cucsa.096200	Cucumber (Gy14) v1	carcgyB0141
Carg06516	CmaCh14G013630	Cucurbita maxima (Rimu)	carcmaB0154
Carg06516	CmoCh14G013960	Cucurbita moschata (Rifu)	carcmoB0163
Carg06516	Lsi07G004360	Bottle gourd (USVL1VR-Ls)	carlsiB109
Carg06516	CsGy4G001720	Cucumber (Gy14) v2	carcgybB0127
Carg06516	MELO3C017858.2	Melon (DHL92) v3.6.1	carmedB0131
Carg06516	CsaV3_4G001760	Cucumber (Chinese Long) v3	carcucB0137
Carg06516	Cla97C07G139180	Watermelon (97103) v2	carwmbB0126

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06516	Wax gourd	carwgoB0150
Carg06516	Wax gourd	carwgoB0139
Carg06516	Silver-seed gourd	carcarB138
Carg06516	Silver-seed gourd	carcarB139
Carg06516	Cucurbita maxima (Rimu)	carcmaB0157
Carg06516	Cucurbita moschata (Rifu)	carcmoB0166
Carg06516	Cucurbita pepo (Zucchini)	carcpeB0173
Carg06516	Cucurbita pepo (Zucchini)	carcpeB0175
Carg06516	Cucurbita pepo (Zucchini)	carcpeB0176
Carg06516	Cucurbita pepo (Zucchini)	carcpeB0177
Carg06516	Wild cucumber (PI 183967)	carcpiB0135
Carg06516	Cucumber (Chinese Long) v2	carcuB0130
Carg06516	Cucumber (Chinese Long) v3	carcucB0139
Carg06516	Bottle gourd (USVL1VR-Ls)	carlsiB106
Carg06516	Melon (DHL92) v3.5.1	carmeB0121
Carg06516	Melon (DHL92) v3.6.1	carmedB0124
Carg06516	Watermelon (Charleston Gray)	carwcgB0117
Carg06516	Watermelon (97103) v1	carwmB0117
Carg06516	Watermelon (97103) v2	carwmbB0127