Carg06511 (gene) Silver-seed gourd

Overview
NameCarg06511
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpalmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_051 : 943511 .. 945857 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTCTCAATTCTCGACCGACCCATTCCAAATTCCACCGCTTACCATCCCTCCGCCGCGAAATCCACCGTCCACGCCTGCCGATCATTCGTTTAACTCCGATCCCCGGTGACCCATTACCCTTAAATTATGTGGGTCGTTGCGATTTCAAAGCCCTAAGGCTGAATTCAGCAATTCAGATTCAAAACAGAGCAATTCCACCGCCGGCAGAGGCATTTGAGTCACAGTCTCCAACGCCGCCAACGCCGCTGGCTGCAGCGGATGGAAGGAGGATTTTGTTGTCAGACGTGGTGGTGAGGCGGCAGAGGGAAGTGTTTTGGGGCCGGAAATGGACATCATTAGACATCGGAACCGCAGGAGTTGTGGTGGCGACGCATTTACTCACACTGTTCGCTCCATTTCAGTTCAATTGGGCTGCTTTTTGGGTTGCGATTTCTCTGTACATTGCCACCGGTCTTTTCGGCATAACCCTTTCATTTCATCGAAATCTCTCTCACCGGAGCTTCAAACTTCCCAAATGGCTCGAATATCTCTTCGCCTATTGTGGAGTTCAAGCCCTTCAGGTTCTCAAAACAAATCCCCTGTTTTATTAGCTAGTCGTTTCGTACTCTGTTTCTTACTCTGTTTCGGTTCTTTCAATTCTCTTTCAGGGAAATCCAATTGATTGGGTTAGTACCCATAGATATCACCATCAATTTTGTGATTCAGAAAGAGACCCACATAGTCCAATTGAAGGGTTTTGGTTTAGCCATATGAGTTGGTTGTTTGATACCAATTCTATAGTTCAGAGGGTGAGAATTCAATACCATCGCTTAAATTTTACCACAAATTAGTGTTCAATTTCAAACTTACGTGTTCTTTTGTTAGTGTGGAGAGCCAAACAATGTCGGGGATTTGCAGAAGCAGCCATTTTACAGGTTCATTCAGAATACATATCTTCTTCATCCCATTGCTCTTGGTGCTTTGCTCTATGCAATTGGAGGGTTCCCATTCATTGTTTGGGGAATGGTAAGACCGATTCTTCTTTTTCTTGCCTTGATTAACCAATTGTAAAGCTTGTGTTTTGTTCTTGATTACAGGGTGTGAGAATAGTTTGGGTATACCACATCACCTGGCTGGTGAATTCAGCTTGCCATGTTTGGGGAAAACAAGCTTGGAAAACAGGGGATTTGTCTAGAAACAATTGGTAAATTCTTAAGTTTCCATCAACTTCTCGATCGAAATATCGTCGATACAATAGTTTTAACGTCCTACGCTACCTAGAGTTTCATTCATAGAGACCGAGTTATTTCACTAATGTCATAAAAGCTTCATTTTTGTTATCAATGTTACAAGTTTGCAAGTTATTCTCATGTCTTGGAAGCTATAGAAATTTAGGACACGTCTTGTATGACTTTTCAAATGCTTAAAAGAACGTTGTAGGGACCAAGTGTAATGTGTTTGTTGGCTAGGTGGGTGGCATTGCTTGCATTTGGGGAGGGATGGCACAACAACCACCACGCGTTCGAGTTCTCGGCCCGACATGGCCTAGAGTGGTGGCAGCTTGACATGACATGGTACGTGGTTCGGCTTCTTCAAGCTCTTGGTTTGGCTACCGATGTGAAGATACCAACACAAGTTCAGAAAGAAAAATTAGCTATTATCAATACCACATGATTTTATACCAACTTTTTTGTAAGCCATATCTCAAAACCAGAAACTGTATGTCCTCTCATTTTGACATCCACATGGTTTCTAGAGGCAAAATATACATAGAGGGATAACACTTCAATTGGAAAGTATTAGAATTGTTGAACGTTACATAATTCACTTATGAACAAATCATTTAACGTGTTAAAACATGAATGAATAAAAAGAGTACTCTACTCGAAATTTGTAACCGCTCAAGCCCACCTCTAGTAGATATTTTCTTATTTGGTTCGTTATGTATCGTTGTCCGTCTCACAGTTTTAAAACGCATCTACCAGGGAAAGGTTTTCATATTCTTATAAGAAACACTTCGTTCCTTTCTTCAATCCAAATGGGATCTCACAATCCACCCTAATAGGGGATGGTGATATGGAGAGAGAAACGAAGCATTCCTTATAAAGATATGGAAACTTTTTCCTTTAGACACGTTTTAAAATCGTGAGGTTGACGGTGATAGATAATGAACCAAAACAAACAATATCTACCAGTAGTGAGTTTGGGCGGTTACAAAATTGTTCCCTTAACACGAATCTAGGTCCACTCGAAGAAAAATGTCAGAAATGGATTGCCTTTGTGAGTATATGTACACCTAACAAGTGAACTCGTTCTTATTTTAATTTCAAGTTCAAATACTCGATGAATATGGTTAACTAA

mRNA sequence

ATGGCGCTTCTCAATTCTCGACCGACCCATTCCAAATTCCACCGCTTACCATCCCTCCGCCGCGAAATCCACCGTCCACGCCTGCCGATCATTCGTTTAACTCCGATCCCCGGTGACCCATTACCCTTAAATTATGTGGGTCGTTGCGATTTCAAAGCCCTAAGGCTGAATTCAGCAATTCAGATTCAAAACAGAGCAATTCCACCGCCGGCAGAGGCATTTGAGTCACAGTCTCCAACGCCGCCAACGCCGCTGGCTGCAGCGGATGGAAGGAGGATTTTGTTGTCAGACGTGGTGGTGAGGCGGCAGAGGGAATTCAAATACTCGATGAATATGGTTAACTAA

Coding sequence (CDS)

ATGGCGCTTCTCAATTCTCGACCGACCCATTCCAAATTCCACCGCTTACCATCCCTCCGCCGCGAAATCCACCGTCCACGCCTGCCGATCATTCGTTTAACTCCGATCCCCGGTGACCCATTACCCTTAAATTATGTGGGTCGTTGCGATTTCAAAGCCCTAAGGCTGAATTCAGCAATTCAGATTCAAAACAGAGCAATTCCACCGCCGGCAGAGGCATTTGAGTCACAGTCTCCAACGCCGCCAACGCCGCTGGCTGCAGCGGATGGAAGGAGGATTTTGTTGTCAGACGTGGTGGTGAGGCGGCAGAGGGAATTCAAATACTCGATGAATATGGTTAACTAA

Protein sequence

MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAIQIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQREFKYSMNMVN
Homology
[Close]
BLAST of Carg06511 vs. NCBI nr
Match: XP_022980801.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 6.5e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLNSRPT SKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNS I
Sbjct: 1   MALLNSRPTRSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSPI 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
           QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE
Sbjct: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 105

[Close]
BLAST of Carg06511 vs. NCBI nr
Match: XP_022955453.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 4.2e-49
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLNSRPTHSKFHRL SLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKAL+LNS I
Sbjct: 1   MALLNSRPTHSKFHRLTSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALKLNSPI 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
           QIQNRAIPPPAEAFESQSPTPPTPLAA DGRRILLSDVVVRRQRE
Sbjct: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAVDGRRILLSDVVVRRQRE 105

[Close]
BLAST of Carg06511 vs. NCBI nr
Match: XP_023526548.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 5.5e-49
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLNSRPTHSKFHRL SLRREIHRPRLPIIRLTPIPGDPLPLNYVG CDFKALRLNS I
Sbjct: 1   MALLNSRPTHSKFHRLTSLRREIHRPRLPIIRLTPIPGDPLPLNYVGCCDFKALRLNSPI 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
           QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE
Sbjct: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 105

[Close]
BLAST of Carg06511 vs. NCBI nr
Match: XP_022153667.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-26
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLNS P+ SKFHR PSL R IHRPR   +    +  DPL LN+VGR DFK+LRLNS  
Sbjct: 1   MALLNSPPSDSKFHRFPSLHRAIHRPRPSPVHFPRVSPDPLSLNFVGRRDFKSLRLNSPT 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
              NRAIPPPAEAFE+++  P    AAADGRRILLSDVVVRR+RE
Sbjct: 61  LNLNRAIPPPAEAFEAEASRP----AAADGRRILLSDVVVRRRRE 101

[Close]
BLAST of Carg06511 vs. NCBI nr
Match: XP_022949010.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 8.5e-26
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLNSR + SKFHR PSLR  IH PRL  +    + GDPL LN VGRC+FK+LRLNS+ 
Sbjct: 1   MALLNSRLSDSKFHRFPSLRLAIHHPRLMAVSFRSVSGDPLGLNLVGRCNFKSLRLNSSC 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
           +IQNRA PP  EAFE  SP PP     A G+RILLSDVVVRR RE
Sbjct: 61  RIQNRATPPLTEAFEPGSPPPP-----ASGKRILLSDVVVRRPRE 100

[Close]
BLAST of Carg06511 vs. TrEMBL
Match: tr|A0A1S3BXL5|A0A1S3BXL5_CUCME (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103494695 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 0 

Query: 1   MALLNSRPTHSKFHRLPSLRREIHRPRLPIIRLTPIPGDPLPLNYVGRCDFKALRLNSAI 60
           MALLN  P+HSKFHR PSLR  IHR RLP +    IP + LP N+VG  +F +LRLNS I
Sbjct: 1   MALLNPPPSHSKFHRFPSLRPSIHRQRLPALNFPSIPHEQLPFNFVGPRNFISLRLNSPI 60

Query: 61  QIQNRAIPPPAEAFESQSPTPPTPLAAADGRRILLSDVVVRRQRE 106
            IQNRAI  P EAFE +S  PP   +  DGRRILLSDVVV+R+RE
Sbjct: 61  HIQNRAISSPTEAFEPES-LPPPLASGVDGRRILLSDVVVKRRRE 104

The following BLAST results are available for this feature:
BLAST of Carg06511 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022980801.16.5e-5098.10palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C... [more]
XP_022955453.14.2e-4996.19palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C... [more]
XP_023526548.15.5e-4997.14palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C... [more]
XP_022153667.16.5e-2665.71palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [M... [more]
XP_022949010.18.5e-2664.76palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C... [more]
BLAST of Carg06511 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06511 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06511 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BXL5|A0A1S3BXL5_CUCME1.8e-2461.90palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06511-RACarg06511-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06511Cla012720Watermelon (97103) v1carwmB0120
Carg06511MELO3C017876Melon (DHL92) v3.5.1carmeB0127
Carg06511ClCG07G012570Watermelon (Charleston Gray)carwcgB0121
Carg06511CSPI04G01650Wild cucumber (PI 183967)carcpiB0133
Carg06511Cucsa.096350Cucumber (Gy14) v1carcgyB0141
Carg06511CmaCh01G001470Cucurbita maxima (Rimu)carcmaB0157
Carg06511CmaCh14G013510Cucurbita maxima (Rimu)carcmaB0154
Carg06511CmoCh14G013760Cucurbita moschata (Rifu)carcmoB0163
Carg06511CmoCh01G001550Cucurbita moschata (Rifu)carcmoB0166
Carg06511Lsi07G004530Bottle gourd (USVL1VR-Ls)carlsiB109
Carg06511CsGy4G001500Cucumber (Gy14) v2carcgybB0127
Carg06511MELO3C017876.2Melon (DHL92) v3.6.1carmedB0131
Carg06511CsaV3_4G001630Cucumber (Chinese Long) v3carcucB0137
Carg06511Bhi01G002748Wax gourdcarwgoB0145
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06511Carg04226Silver-seed gourdcarcarB139
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06511Cucurbita pepo (Zucchini)carcpeB0173
Carg06511Cucurbita pepo (Zucchini)carcpeB0175
Carg06511Cucurbita pepo (Zucchini)carcpeB0176
Carg06511Wild cucumber (PI 183967)carcpiB0135
Carg06511Cucumber (Chinese Long) v2carcuB0128
Carg06511Cucumber (Chinese Long) v2carcuB0130
Carg06511Cucumber (Chinese Long) v3carcucB0139
Carg06511Bottle gourd (USVL1VR-Ls)carlsiB106
Carg06511Melon (DHL92) v3.5.1carmeB0121
Carg06511Melon (DHL92) v3.6.1carmedB0124
Carg06511Watermelon (Charleston Gray)carwcgB0117
Carg06511Watermelon (97103) v1carwmB0117
Carg06511Watermelon (97103) v2carwmbB0126
Carg06511Watermelon (97103) v2carwmbB0127
Carg06511Wax gourdcarwgoB0150
Carg06511Wax gourdcarwgoB0139