Carg06326 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06326
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide repeat-like superfamily protein
Location	Cucurbita_argyrosperma_scaffold_016 : 975332 .. 976494 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCAGTGCAAGCTTAGAAGAGAGAGCATTTTATGCCTACGGTACAGTGGCGAATTTGGTTTAACTCCTTCATCTTCCACGTATAGTTCTTTGCTTATCAGCTTAGCTAGGAAGGGGAACCTTGATGAAGCTAGGATAATTTTGTACGACATGATAGAGAAAGGATTCCCTGTCAATAACCTGGCTTTTACAGCTCTTTTGAATGGGTGCTTCAGGGCAGGAGATGTCATTACGGCTGAAAGTTTGTGGAATGAGATGAAGGGTAGGGGGTGTTACCAGATGTAGTTGCATTTGCAGCTTTAATTTATGGGCTCTGTATGTCTGGTTTGATGAAGGATGCTTATGATGTTGTGAGATCCCACATTGGTTGGAGAGGGGTATGAAACATTCTTTATAAGAGTGTGGAAACCTCTTTCTAGTAGACACGTTTTAAAAACCTCGAGGGGAAGTCCAAAAAGGAAAGTCCAGAGTTGACAATATCTGCTAGCGGTGAGCTTGGGCTGTTATAAATGGTATCAGAACTAGATATCGGACGGTGTGTCAGTGAGGATGTTGGGGCCCGAAGGGTGGTGGACTGTGAAATCCCACATCGATTGGAAAGGGGAATGTAACATTCTTTATAAAGGTGTGGAAACCTCTTCCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAGCCTGAAAGGGAAAACCCAAAGAGAGCAATATCTACTAACGGTGGGCTTGGGTTGTTTATAGAAGTATTGTCTGACATCTTGAGAAAAAAAGTTTGTGCCTAATAATTTTGTGTTCAATTCCTAGATTGGTGGAATCTGAAAAGTGGGAAAACTAATATTTTTACGACAAACACGATAATTGGTGGGGAATGCAAACAAAGATAGACGAAGTTAGCCATTGGGACGTTCATGGACATGTATAAGATGAGTTTATCTCATGATATTGTCACTTACAGCACATTGATTAATGGTTACTGTAAAGTGACATGGGTAATGAAAATGTCAGATGGTAGGTGGGAACCTGATATAAGGACTTACAGTATACGAATTCATGGTTTCTGCACTGCCCGAAAAATCAAGTGGGCTGGGGCGATACTTGAGGAGCTTATTTCAGCAGGGGTTGTTCCTAATACTGTAACATGCAATACTATGATTAATGCTGTCTAG

mRNA sequence

ATGCGGCAGTGCAAGCTTAGAAGAGAGAGCATTTTATGCCTACGGTACAGTGGCGAATTTGGTTTAACTCCTTCATCTTCCACGTATAGTTCTTTGCTTATCAGCTTAGCTAGGAAGGGGAACCTTGATGAAGCTAGGATAATTTTGTACGACATGATAGAGAAAGGATTCCCTGTCAATAACCTGGCTTTTACAGCTCTTTTGAATGGGTGCTTCAGGGCAGGAGATGTCATTACGGCTGAAACCATTGGGACGTTCATGGACATGTATAAGATGAGTTTATCTCATGATATTGTCACTTACAGCACATTGATTAATGGTTACTGTAAAGTGACATGGGTAATGAAAATGTCAGATGGTAGGTGGGAACCTGATATAAGGACTTACAGTATACGAATTCATGGTTTCTGCACTGCCCGAAAAATCAAGTGGGCTGGGGCGATACTTGAGGAGCTTATTTCAGCAGGGGTTGTTCCTAATACTGTAACATGCAATACTATGATTAATGCTGTCTAG

Coding sequence (CDS)

ATGCGGCAGTGCAAGCTTAGAAGAGAGAGCATTTTATGCCTACGGTACAGTGGCGAATTTGGTTTAACTCCTTCATCTTCCACGTATAGTTCTTTGCTTATCAGCTTAGCTAGGAAGGGGAACCTTGATGAAGCTAGGATAATTTTGTACGACATGATAGAGAAAGGATTCCCTGTCAATAACCTGGCTTTTACAGCTCTTTTGAATGGGTGCTTCAGGGCAGGAGATGTCATTACGGCTGAAACCATTGGGACGTTCATGGACATGTATAAGATGAGTTTATCTCATGATATTGTCACTTACAGCACATTGATTAATGGTTACTGTAAAGTGACATGGGTAATGAAAATGTCAGATGGTAGGTGGGAACCTGATATAAGGACTTACAGTATACGAATTCATGGTTTCTGCACTGCCCGAAAAATCAAGTGGGCTGGGGCGATACTTGAGGAGCTTATTTCAGCAGGGGTTGTTCCTAATACTGTAACATGCAATACTATGATTAATGCTGTCTAG

Protein sequence

MRQCKLRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEPDIRTYSIRIHGFCTARKIKWAGAILEELISAGVVPNTVTCNTMINAV

Homology

[Close]

BLAST of Carg06326 vs. NCBI nr
Match: PWZ21624.1 (Pentatricopeptide repeat-containing protein [Zea mays])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +G LDEA+++L  M+ KG+ ++  +FT
Sbjct: 413 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFT 472

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWV 115
             L+  FR G+ + A  +  + DM K+ L  D + +S  ING C++ +V
Sbjct: 473 ICLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLCRLDYV 518

[Close]

BLAST of Carg06326 vs. NCBI nr
Match: ONM41637.1 (Tetratricopeptide repeat-like superfamily protein [Zea mays])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 5   KLRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAF 64
           +L  E+    R   + GL PSSST++ L++ L  +  LDEA+++L  M+ KG+ ++  +F
Sbjct: 126 RLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-SF 185

Query: 65  TALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEP 124
           T  L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +        
Sbjct: 186 TISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE-------- 245

Query: 125 XXXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                               A     E+ S G+VPN +T N++I+ +
Sbjct: 246 --------------------AYQAFAEMTSRGIVPNNITYNSIISTL 261

[Close]

BLAST of Carg06326 vs. NCBI nr
Match: XP_023157880.1 (pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like [Zea mays])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 5   KLRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAF 64
           +L  E+    R   + GL PSSST++ L++ L  +  LDEA+++L  M+ KG+ ++  +F
Sbjct: 99  RLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-SF 158

Query: 65  TALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEP 124
           T  L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +        
Sbjct: 159 TISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE-------- 218

Query: 125 XXXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                               A     E+ S G+VPN +T N++I+ +
Sbjct: 219 --------------------AYQAFAEMTSRGIVPNNITYNSIISTL 234

[Close]

BLAST of Carg06326 vs. NCBI nr
Match: ONL94652.1 (Tetratricopeptide repeat-like superfamily protein [Zea mays])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +  LDEA++IL  M+ KG+ ++  +FT
Sbjct: 137 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLILEHMVIKGYCIST-SFT 196

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEPX 125
             L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +         
Sbjct: 197 ISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE--------- 256

Query: 126 XXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                              A     E+ S G+VPN +T N++I+ +
Sbjct: 257 -------------------AYQAFAEMTSRGIVPNNITYNSIISTL 271

[Close]

BLAST of Carg06326 vs. NCBI nr
Match: NP_001309798.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Zea mays] >AQK65836.1 Tetratricopeptide repeat-like superfamily protein [Zea mays])

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +G LDEA+++L  M+ KG+ ++  +FT
Sbjct: 440 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFT 499

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWV 115
             L+  FR G+ + A  +  + DM  + L  D + +S  ING C++  V
Sbjct: 500 ICLDAYFRDGNAVGA--LKCWDDMGNIGLQTDFIAFSAYINGLCRLDCV 545

[Close]

BLAST of Carg06326 vs. TAIR10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 39/151 (25.83%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 24  PSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRAGDVITAETI 83
           P+   Y  L++ L +    ++A  +  +MI +G  VN+  +TAL++   R+G    A T+
Sbjct: 148 PNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTL 207

Query: 84  GTFMDMYKMSLSH----DIVTYSTLINGYCKVTWVMKMSDGRWEPXXXXXXXXXXXXXTA 143
                + +M  SH    D+ TYS LI  + +V    K+ D                    
Sbjct: 208 -----LERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQD-------------------- 265

Query: 144 RKIKWAGAILEELISAGVVPNTVTCNTMINA 171
                   +L ++   G+ PNT+T NT+I+A
Sbjct: 268 --------LLSDMRRQGIRPNTITYNTLIDA 265

[Close]

BLAST of Carg06326 vs. TAIR10
Match: AT5G15010.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 6.8e-05
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 20  FGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNG-CFRAGDVI 79
           F L      + SLL +L R  N+ +A  +++   +K +P +  +F  +LNG C   G   
Sbjct: 226 FKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDK-YPFDAKSFNIVLNGWCNVIGSPR 285

Query: 80  TAETIGTFMDMYKMSLSHDIVTYSTLINGYCK---VTWVMKMSD 120
            AE +  +M+M  + + HD+V+YS++I+ Y K   +  V+K+ D
Sbjct: 286 EAERV--WMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFD 326

[Close]

BLAST of Carg06326 vs. TAIR10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-05
Identity = 25/97 (25.77%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 15  RYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRA 74
           R  GE  L P    Y+ +L   A  G++++A  +   MIEK   ++   + +L+ G  + 
Sbjct: 654 RLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKV 713

Query: 75  GDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKV 112
           G +    ++   M+  +M    D  TY+ ++ G+C+V
Sbjct: 714 GKLCEVRSLIDEMNAREMEPEAD--TYNIIVKGHCEV 748

[Close]

BLAST of Carg06326 vs. TAIR10
Match: AT5G57250.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 28/90 (31.11%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 21  GLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRAGDVITA 80
           G+     TYS+LL S  +  N+D    I    +E   P++ +    LL      G    A
Sbjct: 407 GVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEA 466

Query: 81  ETIGTFMDMYKMSLSHDIVTYSTLINGYCK 111
           + +  +  M +M L+ D  TY+T+I GYCK
Sbjct: 467 DAL--YRAMPEMDLTPDTATYATMIKGYCK 494

[Close]

BLAST of Carg06326 vs. TAIR10
Match: AT4G31070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 7.5e-04
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 28  TYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRAGDVITAETIGTFM 87
           ++SS++ +    G+  EA  I   MI+ G  V+++AF A+L+ C  AG V  A+TI T  
Sbjct: 421 SWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQA 480

Query: 88  DMYKMSLS-HDIVTYSTLINGYCKV 112
             Y M ++      Y  L+  + K+
Sbjct: 481 GKYHMPVTLEHYACYINLLGRFGKI 505

[Close]

BLAST of Carg06326 vs. Swiss-Prot
Match: sp|Q9FKC3|PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 8.5e-05
Identity = 39/151 (25.83%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 24  PSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFTALLNGCFRAGDVITAETI 83
           P+   Y  L++ L +    ++A  +  +MI +G  VN+  +TAL++   R+G    A T+
Sbjct: 148 PNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTL 207

Query: 84  GTFMDMYKMSLSH----DIVTYSTLINGYCKVTWVMKMSDGRWEPXXXXXXXXXXXXXTA 143
                + +M  SH    D+ TYS LI  + +V    K+ D                    
Sbjct: 208 -----LERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQD-------------------- 265

Query: 144 RKIKWAGAILEELISAGVVPNTVTCNTMINA 171
                   +L ++   G+ PNT+T NT+I+A
Sbjct: 268 --------LLSDMRRQGIRPNTITYNTLIDA 265

[Close]

BLAST of Carg06326 vs. TrEMBL
Match: tr|A0A1D6NNA9|A0A1D6NNA9_MAIZE (Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044560 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.2e-09
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 5   KLRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAF 64
           +L  E+    R   + GL PSSST++ L++ L  +  LDEA+++L  M+ KG+ ++  +F
Sbjct: 126 RLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-SF 185

Query: 65  TALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEP 124
           T  L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +        
Sbjct: 186 TISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE-------- 245

Query: 125 XXXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                               A     E+ S G+VPN +T N++I+ +
Sbjct: 246 --------------------AYQAFAEMTSRGIVPNNITYNSIISTL 261

[Close]

BLAST of Carg06326 vs. TrEMBL
Match: tr|A0A1D6JRU0|A0A1D6JRU0_MAIZE (Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d028080 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.4e-09
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +  LDEA++IL  M+ KG+ ++  +FT
Sbjct: 137 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLILEHMVIKGYCIST-SFT 196

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEPX 125
             L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +         
Sbjct: 197 ISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE--------- 256

Query: 126 XXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                              A     E+ S G+VPN +T N++I+ +
Sbjct: 257 -------------------AYQAFAEMTSRGIVPNNITYNSIISTL 271

[Close]

BLAST of Carg06326 vs. TrEMBL
Match: tr|A0A1D6QBN6|A0A1D6QBN6_MAIZE (Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d051972 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 47/166 (28.31%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +  LDEA+++L  M+ KG+ ++  +FT
Sbjct: 137 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-SFT 196

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEPX 125
             L+  FR G+ + A  +  + DM K+ L  D + +S  ING  ++ +V +         
Sbjct: 197 ISLDAYFRDGNAVGA--LKCWDDMGKIGLQTDFIAFSAYINGLSRLDYVNE--------- 256

Query: 126 XXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                              A     E+ S G+VPN +T N++I+ +
Sbjct: 257 -------------------AYQAFAEMTSRGIVPNNITYNSIISTL 271

[Close]

BLAST of Carg06326 vs. TrEMBL
Match: tr|A0A1D6GRZ3|A0A1D6GRZ3_MAIZE (Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=103626265 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +G LDEA+++L  M+ KG+ ++  +FT
Sbjct: 440 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFT 499

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWV 115
             L+  FR G+ + A  +  + DM  + L  D + +S  ING C++  V
Sbjct: 500 ICLDAYFRDGNAVGA--LKCWDDMGNIGLQTDFIAFSAYINGLCRLDCV 545

[Close]

BLAST of Carg06326 vs. TrEMBL
Match: tr|A0A1D6J5G1|A0A1D6J5G1_MAIZE (Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d025191 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 47/166 (28.31%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 6   LRRESILCLRYSGEFGLTPSSSTYSSLLISLARKGNLDEARIILYDMIEKGFPVNNLAFT 65
           L  E+    R   + GL PSSST++ L++ L  +  LDEA+++L  M+ KG+ ++  +FT
Sbjct: 100 LHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-SFT 159

Query: 66  ALLNGCFRAGDVITAETIGTFMDMYKMSLSHDIVTYSTLINGYCKVTWVMKMSDGRWEPX 125
             L+  FR G+ +   T+  + DM K+ L  D + +S  ING  ++ +V +         
Sbjct: 160 ISLDAYFRDGNAV--GTLKCWDDMGKIGLQTDFIAFSAYINGLSQLDYVNE--------- 219

Query: 126 XXXXXXXXXXXXTARKIKWAGAILEELISAGVVPNTVTCNTMINAV 172
                              A     E+ S G+VPN +T N++I+ +
Sbjct: 220 -------------------AYQAFAEMTSRGIVPNNITYNSIISTL 234

The following BLAST results are available for this feature:

BLAST of Carg06326 vs. NCBI nr


Match Name	E-value	Identity	Description
PWZ21624.1	1.7e-09	35.78	Pentatricopeptide repeat-containing protein [Zea mays]	[more]
ONM41637.1	1.1e-08	28.14	Tetratricopeptide repeat-like superfamily protein [Zea mays]	[more]
XP_023157880.1	1.1e-08	28.14	pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like [Zea m...	[more]
ONL94652.1	1.4e-08	28.92	Tetratricopeptide repeat-like superfamily protein [Zea mays]	[more]
NP_001309798.1	1.9e-08	34.86	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-li...	[more]

BLAST of Carg06326 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48730.1	4.7e-06	25.83	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15010.1	6.8e-05	30.77	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G12100.1	8.9e-05	25.77	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G57250.1	2.0e-04	31.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G31070.1	7.5e-04	31.76	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg06326 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKC3\|PP424_ARATH	8.5e-05	25.83	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]

BLAST of Carg06326 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1D6NNA9\|A0A1D6NNA9_MAIZE	7.2e-09	28.14	Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB7...	[more]
tr\|A0A1D6JRU0\|A0A1D6JRU0_MAIZE	9.4e-09	28.92	Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB7...	[more]
tr\|A0A1D6QBN6\|A0A1D6QBN6_MAIZE	1.2e-08	28.31	Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB7...	[more]
tr\|A0A1D6GRZ3\|A0A1D6GRZ3_MAIZE	1.2e-08	34.86	Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=1036262...	[more]
tr\|A0A1D6J5G1\|A0A1D6J5G1_MAIZE	1.2e-08	28.31	Tetratricopeptide repeat-like superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB7...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06326-RA	Carg06326-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 27..57 e-value: 8.0E-6 score: 25.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 28..60 e-value: 4.3E-5 score: 21.4 coord: 128..161 e-value: 8.2E-5 score: 20.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 124..170 e-value: 3.0E-8 score: 33.6 coord: 63..110 e-value: 2.3E-9 score: 37.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 60..96 score: 6.884
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 125..159 score: 9.591
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 25..59 score: 10.654
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 11..113 e-value: 2.9E-20 score: 74.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 114..171 e-value: 1.6E-11 score: 46.0
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 21..170
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 21..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06326	Cla97C05G083520	Watermelon (97103) v2	carwmbB1008
Carg06326	Bhi01G000122	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06326	Carg14893	Silver-seed gourd	carcarB549

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06326	Silver-seed gourd	carcarB266
Carg06326	Cucumber (Gy14) v1	carcgyB1077
Carg06326	Silver-seed gourd	carcarB649
Carg06326	Cucumber (Gy14) v2	carcgybB0946
Carg06326	Cucumber (Gy14) v2	carcgybB0948
Carg06326	Cucumber (Gy14) v1	carcgyB1078
Carg06326	Cucurbita maxima (Rimu)	carcmaB1320
Carg06326	Cucurbita maxima (Rimu)	carcmaB1321
Carg06326	Cucurbita maxima (Rimu)	carcmaB1325
Carg06326	Cucurbita moschata (Rifu)	carcmoB1284
Carg06326	Cucurbita moschata (Rifu)	carcmoB1285
Carg06326	Cucurbita moschata (Rifu)	carcmoB1288
Carg06326	Cucurbita moschata (Rifu)	carcmoB1289
Carg06326	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06326	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06326	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06326	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06326	Wild cucumber (PI 183967)	carcpiB0998
Carg06326	Wild cucumber (PI 183967)	carcpiB0996
Carg06326	Cucumber (Chinese Long) v2	carcuB0975
Carg06326	Cucumber (Chinese Long) v3	carcucB1003
Carg06326	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06326	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06326	Melon (DHL92) v3.5.1	carmeB0941
Carg06326	Melon (DHL92) v3.6.1	carmedB0947
Carg06326	Watermelon (Charleston Gray)	carwcgB0935
Carg06326	Watermelon (Charleston Gray)	carwcgB0936
Carg06326	Watermelon (97103) v1	carwmB0961
Carg06326	Watermelon (97103) v2	carwmbB1009