Carg06292 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06292
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	myb family transcription factor APL isoform X1
Location	Cucurbita_argyrosperma_scaffold_016 : 765450 .. 767545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACGGATATCGGCTTTCAGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGAGTATGCTCGAGTTTTTCTTTTTGACATCATTGTTTTTCGTGACTTTTTCGATCTGTCGTTCATTGAGTACTTTTATATTTCGAACAGCGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTTAGTCTCTCATTTGCTCTTCCTGAACATAATAAATTCCGTTTTCAACTCCGTGCCATTACCGTTAAAACAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGAGATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCAGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACCGTTATGGCTCGAATAGGCGATTGCTCAATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCTCCTATCGGAGTAGGGTCGACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCGATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGAGTAATATTGGATGAAATGTCCAGTCTTTTTCTTCTTCTAATCTACATTTTTTCTTTTAACTGTTTAGTTCATCCAAATGTGTTGAAATCTTTAATGAAGGATACAATATGTTCTGTGGTTTGTATATTCTTTGTAATCAGACCCCTTTTTGCTGTTTAGTTGACTTTTTAAAAGTCAACGTTTTTTTTAAAAACTTATTATGGTCAAATATTCGATCGTTAGGGGGCCGAAAGGGTAAATCACAAAAGTTATTTTTGTTGATACAGTGGTTTTCACAATTAATCTATGTTTTTCTTTTCTGACCGAGGGGCAAAAAGGTAAAGTGTACAACTTATTCGGTTGTTAAGGTCATTTGCACAATTAACCTATGTTCTTTTCTCATCGGGAGGGGTTGGAGGGCAAAAGAGTAAATCACACAAGTTATTCAATTGTTAAGGTCATTTGCATAGTTAACGTATGTGGCTTCCCTTCTCACAGAGGTCTAGGGGCAAAATGGTCGGTCAAAAAGGTAAAGGGTAAAATTTATTCGGTTGGTAAGGTCATTTGCACAATTAACCTATGTTCTTTTCTAATCGGGAGGGGTTGGAGGGCAAAAGAGTAAATCACACAAGTTATTATGTTGTTAAGGTCATTTGCATAGTTAACGTATGTGGCTTCCTTTCTCGCTAGGGGTCCAGGGGCAAAATGGTAAAGTGCAAAAAGTTATTCTTGTTGGGAGAGGGTTGAGGGGTAAAAGAGTAAAGTATAAAGTTTTTGGACGGTTAAGATTGTTTGCAAAAGGGGTTGAGGGCAAAATGGTAAAATATAAAAATTATTCAGTTGTCCAGGTTATCTGTACAACAAATGTATGTGTTTTCTCTTCTAATTGGGAGTCGAGGGGTAAAATGGTAAAATGCAAAAGCTATTCTGGTTGTTATGATTATTTGTACAATTAACCTATGTTTTTCTCTTCTCTCCAAGACAGGTAAAAGGGTAAAACAAAAAAGTTATTCCATTGATAAGGTCATTCACATAATTAACCTATGTGTTTTCTTTTCTCATCGAGGGTTGAGGGGCAAAACGGTAAAATGCAAAAGTTATTTATACAATTAACTTATGTTTTTCTTTTCTCCCGAGAGTTGACAGGTAAAATGGTAAAACACAAAAAGTCATTCCATCGATAAGGTCATTTGCACAATTCCTATATGTTTTCCTTTTTCTCGTCAAGGGTTGAGGGGCAAAATGGTAAAATGCAAAAGTTATTCTTGTCATTGTACAATTAACCTATGTTCTTTTTTTTTTTCACGAGAAGTTGACAGACAAAAGGGTAAAGCACAAAAGTTATTCGGTTGA

mRNA sequence

ATGGCTCACGGATATCGGCTTTCAGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGAGATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCAGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACCGTTATGGCTCGAATAGGCGATTGCTCAATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCTCCTATCGGAGTAGGGTCGACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCGATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGATTGACAGACAAAAGGGTAAAGCACAAAAGTTATTCGGTTGA

Coding sequence (CDS)

ATGGCTCACGGATATCGGCTTTCAGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGAGATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCAGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACCGTTATGGCTCGAATAGGCGATTGCTCAATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCTCCTATCGGAGTAGGGTCGACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCGATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGATTGACAGACAAAAGGGTAAAGCACAAAAGTTATTCGGTTGA

Protein sequence

MAHGYRLSASCMAESQETSSSLSPSSRLMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMMIDRQKGKAQKLFG

Homology

[Close]

BLAST of Carg06292 vs. NCBI nr
Match: XP_022974989.1 (protein PHR1-LIKE 2-like [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASCMAESQETSSSLSPSSRLMTQDLNDGFQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 120 ASCMAESQETSSSLSPSSRLMTQDLNDGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS
Sbjct: 180 XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 239

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV
Sbjct: 240 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 299

Query: 189 LEGNARHEVEWMM 202
           LEGNARHEVEWMM
Sbjct: 300 LEGNARHEVEWMM 312

[Close]

BLAST of Carg06292 vs. NCBI nr
Match: XP_022957549.1 (protein PHR1-LIKE 2-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 6.4e-75
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASCMAESQETSSSLSPSSRLMTQDLNDGFQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 120 ASCMAESQETSSSLSPSSRLMTQDLNDGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSK+MAPLESQKVLPFS
Sbjct: 180 XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKDMAPLESQKVLPFS 239

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV
Sbjct: 240 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 299

Query: 189 LEGNARHEVEWMM 202
           LEGNARHEVEWMM
Sbjct: 300 LEGNARHEVEWMM 312

[Close]

BLAST of Carg06292 vs. NCBI nr
Match: XP_023539057.1 (protein PHR1-LIKE 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 6.4e-75
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASCMAESQETSSSLSPSSRLMTQDLNDGFQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 120 ASCMAESQETSSSLSPSSRLMTQDLNDGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQ+ILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS
Sbjct: 180 XXXKYLQTILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 239

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV
Sbjct: 240 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 299

Query: 189 LEGNARHEVEWMM 202
           LEGNARHEVEWMM
Sbjct: 300 LEGNARHEVEWMM 312

[Close]

BLAST of Carg06292 vs. NCBI nr
Match: XP_008438354.1 (PREDICTED: myb family transcription factor APL isoform X1 [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 3.6e-70
Identity = 175/193 (90.67%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+AESQETSSS SPSSR+M QDLNDGFQV      XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 119 ASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVXXXXXXXXXXXXXXXXXXXXXXX 178

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSIL+RACQALSDQ AASAGLEAAREELSELAIKVSNDSKEMAPLE+QKVLPFS
Sbjct: 179 XXXKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFS 238

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVM RIGDCSMDSCLTSAGSPVSPIGVGST TAMKRPRP FSHGDSM 
Sbjct: 239 ELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMA 298

Query: 189 LEGNARHEVEWMM 202
           LEGNARH+VEWMM
Sbjct: 299 LEGNARHDVEWMM 311

[Close]

BLAST of Carg06292 vs. NCBI nr
Match: XP_004133994.2 (PREDICTED: myb family transcription factor APL isoform X1 [Cucumis sativus] >KGN56735.1 hypothetical protein Csa_3G130900 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 171/189 (90.48%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+AESQETSSS SPSSR+M QDLNDGFQV      XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 119 ASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVXXXXXXXXXXXXXXXXXXXXXXX 178

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSIL+RACQALSDQ AASAGLEAAREELSELAIKVSNDSKEMAPLE+QKVLPFS
Sbjct: 179 XXXKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFS 238

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVM RIGDCSMDSCLTSAGSPVSPIGVGST TAMKRPRP FSHGDSM 
Sbjct: 239 ELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMA 298

Query: 189 LEGNARHEV 198
           LEGNARH+V
Sbjct: 299 LEGNARHDV 307

[Close]

BLAST of Carg06292 vs. TAIR10
Match: AT3G24120.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-12
Identity = 91/165 (55.15%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQ---DLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+ ESQ+T SS + S R+  Q           XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 110 ASCVGESQDTGSSSTSSMRMAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169

Query: 69  XXXXXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSK--EMAPLESQK 128
           XXXX  KYLQSIL++AC+A  +Q A  AGLEAAREELSELAIKVSN S+   +   ++ K
Sbjct: 170 XXXXQGKYLQSILEKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATK 229

Query: 129 VL---PFSELAAALENRKAPTVMARIGDCSMDSCLTSA--GSPVS 164
           ++     SELA A++N+   T      +CS++S LTS   GS +S
Sbjct: 230 MMMMPSLSELAVAIDNKNNITT-----NCSVESSLTSITHGSSIS 269

[Close]

BLAST of Carg06292 vs. TAIR10
Match: AT4G13640.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 76  SILDRACQALSDQTAASAGLEAAREELSELAIKVS-----NDSKEMAPLESQKVLPFSEL 135
           SIL++AC+A+ +Q  A AGLEAAREELSELAIK S       +          +   SEL
Sbjct: 176 SILEKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIPSLSEL 235

Query: 136 AAALENRKAPTVMARIGDCSMDSCLTSA--GSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 195
           A A+E++          +CS +S LTS+  GSPV      S     KR R  F +GDS+V
Sbjct: 236 AVAIEHK---------NNCSAESSLTSSTVGSPV------SAALMKKRQRGVFGNGDSVV 289

Query: 196 LEGNARHEVEWMM 202
           +     H+  W+M
Sbjct: 296 V----GHDAGWVM 289

[Close]

BLAST of Carg06292 vs. TAIR10
Match: AT3G04030.3 (Homeodomain-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 72  KYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELA 131
           KYLQS+L++A + L  Q   +AG+EAA+ +LSEL  KVS +    + LE +++     L 
Sbjct: 180 KYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKEL---QNLC 239

Query: 132 AALENRKAPTVMARIGDCSMDSCLTSA 159
           +       P       DCS++SCLTS+
Sbjct: 240 SQQMQTNYPP------DCSLESCLTSS 257

[Close]

BLAST of Carg06292 vs. TAIR10
Match: AT5G18240.1 (myb-related protein 1)

HSP 1 Score: 44.7 bits (104), Expect = 8.5e-05
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 72  KYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELA 131
           KYLQSIL++A + L  Q   +AG+EA + +LSEL  KVS D  + + LE +++     L 
Sbjct: 180 KYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSADYPDSSFLEPKEL---QNLH 239

Query: 132 AALENRKAPTVMARIGDCSMDSCLTSA 159
                +  P       + S+DSCLTS+
Sbjct: 240 HQQMQKTYPP------NSSLDSCLTSS 257

[Close]

BLAST of Carg06292 vs. Swiss-Prot
Match: sp|Q8LAJ7|PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 97/199 (48.74%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 10  SCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69
           SC+AESQ+T SS + S RL  Q+ N+ +QV       XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 107 SCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQXXXXXXXXXXXXXXXXXXXXXXX 166

Query: 70  XXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVS-----NDSKEMAPLESQKV 129
           XX YLQSIL++AC+A+ +Q  A AGLEAAREELSELAIK S       +          +
Sbjct: 167 XXXYLQSILEKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMI 226

Query: 130 LPFSELAAALENRKAPTVMARIGDCSMDSCLTSA--GSPVSPIGVGSTVTAMKRPRPAFS 189
              SELA A+E++          +CS +S LTS+  GSPV      S     KR R  F 
Sbjct: 227 PSLSELAVAIEHK---------NNCSAESSLTSSTVGSPV------SAALMKKRQRGVFG 286

Query: 190 HGDSMVLEGNARHEVEWMM 202
           +GDS+V+     H+  W+M
Sbjct: 287 NGDSVVV----GHDAGWVM 286

[Close]

BLAST of Carg06292 vs. Swiss-Prot
Match: sp|Q94A57|PHL2_ARATH (Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.0e-16
Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+ ESQ+T SS + S R+  Q+ N+G+QV        XXXXXXXXXXXXXXXXXXXXX
Sbjct: 110 ASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMXXXXXXXXXXXXXXXXXXXXX 169

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSK--EMAPLESQKVL- 128
           XXX YLQSIL++AC+A  +Q A  AGLEAAREELSELAIKVSN S+   +   ++ K++ 
Sbjct: 170 XXXXYLQSILEKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMM 229

Query: 129 --PFSELAAALENRKAPTVMARIGDCSMDSCLTSA--GSPVS 164
               SELA A++N+   T      +CS++S LTS   GS +S
Sbjct: 230 MPSLSELAVAIDNKNNITT-----NCSVESSLTSITHGSSIS 266

[Close]

BLAST of Carg06292 vs. Swiss-Prot
Match: sp|Q9SQQ9|PHL9_ARATH (Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 72  KYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELA 131
           KYLQS+L++A + L  Q   +AG+EAA+ +LSEL  KVS +    + LE +++     L 
Sbjct: 180 KYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKEL---QNLC 239

Query: 132 AALENRKAPTVMARIGDCSMDSCLTSA 159
           +       P       DCS++SCLTS+
Sbjct: 240 SQQMQTNYPP------DCSLESCLTSS 257

[Close]

BLAST of Carg06292 vs. TrEMBL
Match: tr|A0A1S3AWU1|A0A1S3AWU1_CUCME (myb family transcription factor APL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.4e-70
Identity = 175/193 (90.67%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+AESQETSSS SPSSR+M QDLNDGFQV      XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 119 ASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVXXXXXXXXXXXXXXXXXXXXXXX 178

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSIL+RACQALSDQ AASAGLEAAREELSELAIKVSNDSKEMAPLE+QKVLPFS
Sbjct: 179 XXXKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFS 238

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVM RIGDCSMDSCLTSAGSPVSPIGVGST TAMKRPRP FSHGDSM 
Sbjct: 239 ELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMA 298

Query: 189 LEGNARHEVEWMM 202
           LEGNARH+VEWMM
Sbjct: 299 LEGNARHDVEWMM 311

[Close]

BLAST of Carg06292 vs. TrEMBL
Match: tr|A0A0A0L435|A0A0A0L435_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130900 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67
Identity = 171/189 (90.48%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+AESQETSSS SPSSR+M QDLNDGFQV      XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 119 ASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVXXXXXXXXXXXXXXXXXXXXXXX 178

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXXKYLQSIL+RACQALSDQ AASAGLEAAREELSELAIKVSNDSKEMAPLE+QKVLPFS
Sbjct: 179 XXXKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFS 238

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMV 188
           ELAAALENRKAPTVM RIGDCSMDSCLTSAGSPVSPIGVGST TAMKRPRP FSHGDSM 
Sbjct: 239 ELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMA 298

Query: 189 LEGNARHEV 198
           LEGNARH+V
Sbjct: 299 LEGNARHDV 307

[Close]

BLAST of Carg06292 vs. TrEMBL
Match: tr|A0A1S3AWT2|A0A1S3AWT2_CUCME (myb family transcription factor APL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.2e-62
Identity = 158/174 (90.80%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 28  LMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSILDRACQALSD 87
           +M QDLNDGFQV      XXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSIL+RACQALSD
Sbjct: 133 IMAQDLNDGFQVTEALRVXXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSILERACQALSD 192

Query: 88  QTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENRKAPTVMARIG 147
           Q AASAGLEAAREELSELAIKVSNDSKEMAPLE+QKVLPFSELAAALENRKAPTVM RIG
Sbjct: 193 QAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIG 252

Query: 148 DCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMM 202
           DCSMDSCLTSAGSPVSPIGVGST TAMKRPRP FSHGDSM LEGNARH+VEWMM
Sbjct: 253 DCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMM 306

[Close]

BLAST of Carg06292 vs. TrEMBL
Match: tr|A0A2N9G4L5|A0A2N9G4L5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22325 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 137/196 (69.90%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASC+AESQ+T SS SPSSR+M QDLNDG+QV     XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 124 ASCIAESQDTGSSTSPSSRMMAQDLNDGYQVTEALRXXXXXXXXXXXXXXXXXXXXXXXX 183

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XXX YLQSIL++AC+AL+DQ AA+AGLEAAREELSELAIKVSN+ + M PL++ KV  FS
Sbjct: 184 XXXXYLQSILEKACKALNDQAAANAGLEAAREELSELAIKVSNECQGMGPLDTIKVTSFS 243

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTA---MKRPRPAFSHGD 188
           E+AAALEN     + AR+GDCS++SCLTS GSPVSP+G+G    A    KRPRP F +GD
Sbjct: 244 EIAAALENNNTSNLPARLGDCSVESCLTSTGSPVSPMGMGLQAAAAALKKRPRPFFGNGD 303

Query: 189 SMVLEGNARHEVEWMM 202
           S+ LEGN R +VEWMM
Sbjct: 304 SLPLEGNMRQDVEWMM 319

[Close]

BLAST of Carg06292 vs. TrEMBL
Match: tr|A0A2I4HW06|A0A2I4HW06_9ROSI (protein PHR1-LIKE 2-like OS=Juglans regia OX=51240 GN=LOC109022003 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 129/194 (66.49%), Postives = 152/194 (78.35%), Query Frame = 0


Query: 9   ASCMAESQETSSSLSPSSRLMTQDLNDGFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           ASCMAES +T SSLSPSSR++ QD+NDG+QV        XXXXXXXXXXXXXXXXXXXXX
Sbjct: 108 ASCMAESLDTGSSLSPSSRMLAQDMNDGYQVTEALRVQMXXXXXXXXXXXXXXXXXXXXX 167

Query: 69  XXXKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFS 128
           XX KYLQSIL++AC AL+DQ A SAGLEA REELS LAIKVSND   +APLE+ K+   S
Sbjct: 168 XXGKYLQSILEKACNALNDQAAESAGLEATREELSALAIKVSNDRLVLAPLETMKIPSLS 227

Query: 129 ELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAM-KRPRPAFSHGDSM 188
           E+A+A+EN     + ARIGDCS++SCLTS GSPVSP+GV    TA+ KRPRP F + DS+
Sbjct: 228 EIASAIENNNTSNLPARIGDCSVESCLTSTGSPVSPMGVSLQATALKKRPRPLFGNVDSL 287

Query: 189 VLEGNARHEVEWMM 202
            LEGN R ++EWMM
Sbjct: 288 PLEGNMRQDIEWMM 301

The following BLAST results are available for this feature:

BLAST of Carg06292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974989.1	2.9e-75	99.48	protein PHR1-LIKE 2-like [Cucurbita maxima]	[more]
XP_022957549.1	6.4e-75	98.96	protein PHR1-LIKE 2-like [Cucurbita moschata]	[more]
XP_023539057.1	6.4e-75	98.96	protein PHR1-LIKE 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008438354.1	3.6e-70	90.67	PREDICTED: myb family transcription factor APL isoform X1 [Cucumis melo]	[more]
XP_004133994.2	3.8e-67	90.48	PREDICTED: myb family transcription factor APL isoform X1 [Cucumis sativus] >KGN...	[more]

BLAST of Carg06292 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24120.2	2.5e-12	55.15	Homeodomain-like superfamily protein	[more]
AT4G13640.2	5.5e-12	39.85	Homeodomain-like superfamily protein	[more]
AT3G04030.3	5.9e-06	37.93	Homeodomain-like superfamily protein	[more]
AT5G18240.1	8.5e-05	37.93	myb-related protein 1	[more]

BLAST of Carg06292 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LAJ7\|PHL3_ARATH	2.4e-17	48.74	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1	[more]
sp\|Q94A57\|PHL2_ARATH	6.0e-16	54.32	Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1	[more]
sp\|Q9SQQ9\|PHL9_ARATH	1.1e-04	37.93	Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1	[more]

BLAST of Carg06292 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWU1\|A0A1S3AWU1_CUCME	2.4e-70	90.67	myb family transcription factor APL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L435\|A0A0A0L435_CUCSA	2.5e-67	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130900 PE=4 SV=1	[more]
tr\|A0A1S3AWT2\|A0A1S3AWT2_CUCME	9.2e-62	90.80	myb family transcription factor APL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2N9G4L5\|A0A2N9G4L5_FAGSY	2.2e-47	69.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22325 PE=4 SV=1	[more]
tr\|A0A2I4HW06\|A0A2I4HW06_9ROSI	1.6e-45	66.49	protein PHR1-LIKE 2-like OS=Juglans regia OX=51240 GN=LOC109022003 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025756	Myb_CC_LHEQLE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06292-RA	Carg06292-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR31499	FAMILY NOT NAMED	coord: 9..202
None	No IPR available	PANTHER	PTHR31499:SF25	SUBFAMILY NOT NAMED	coord: 9..202
IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain	PFAM	PF14379	Myb_CC_LHEQLE	coord: 37..83 e-value: 5.9E-27 score: 93.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06292	Cla021419	Watermelon (97103) v1	carwmB0961
Carg06292	Csa3G130900	Cucumber (Chinese Long) v2	carcuB0975
Carg06292	MELO3C006313	Melon (DHL92) v3.5.1	carmeB0941
Carg06292	CSPI03G10840	Wild cucumber (PI 183967)	carcpiB0998
Carg06292	Cucsa.256450	Cucumber (Gy14) v1	carcgyB1077
Carg06292	CmaCh14G018940	Cucurbita maxima (Rimu)	carcmaB1320
Carg06292	CmoCh14G019460	Cucurbita moschata (Rifu)	carcmoB1284
Carg06292	Cp4.1LG03g18020	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06292	CsGy3G010900	Cucumber (Gy14) v2	carcgybB0948
Carg06292	CsaV3_3G010950	Cucumber (Chinese Long) v3	carcucB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06292	Wax gourd	carwgoB1114
Carg06292	Wax gourd	carwgoB1118
Carg06292	Wax gourd	carwgoB1123
Carg06292	Silver-seed gourd	carcarB211
Carg06292	Silver-seed gourd	carcarB266
Carg06292	Silver-seed gourd	carcarB610
Carg06292	Silver-seed gourd	carcarB649
Carg06292	Cucumber (Gy14) v2	carcgybB0946
Carg06292	Cucumber (Gy14) v2	carcgybB0947
Carg06292	Cucumber (Gy14) v1	carcgyB1078
Carg06292	Cucurbita maxima (Rimu)	carcmaB1321
Carg06292	Cucurbita maxima (Rimu)	carcmaB1322
Carg06292	Cucurbita maxima (Rimu)	carcmaB1323
Carg06292	Cucurbita maxima (Rimu)	carcmaB1324
Carg06292	Cucurbita maxima (Rimu)	carcmaB1325
Carg06292	Cucurbita maxima (Rimu)	carcmaB1327
Carg06292	Cucurbita moschata (Rifu)	carcmoB1285
Carg06292	Cucurbita moschata (Rifu)	carcmoB1287
Carg06292	Cucurbita moschata (Rifu)	carcmoB1288
Carg06292	Cucurbita moschata (Rifu)	carcmoB1289
Carg06292	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06292	Cucurbita pepo (Zucchini)	carcpeB1329
Carg06292	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06292	Cucurbita pepo (Zucchini)	carcpeB1332
Carg06292	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06292	Wild cucumber (PI 183967)	carcpiB0997
Carg06292	Wild cucumber (PI 183967)	carcpiB0996
Carg06292	Cucumber (Chinese Long) v3	carcucB1002
Carg06292	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06292	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06292	Melon (DHL92) v3.5.1	carmeB0939
Carg06292	Melon (DHL92) v3.6.1	carmedB0945
Carg06292	Melon (DHL92) v3.6.1	carmedB0947
Carg06292	Watermelon (Charleston Gray)	carwcgB0935
Carg06292	Watermelon (Charleston Gray)	carwcgB0936
Carg06292	Watermelon (Charleston Gray)	carwcgB0938
Carg06292	Watermelon (97103) v1	carwmB0962
Carg06292	Watermelon (97103) v2	carwmbB1008
Carg06292	Watermelon (97103) v2	carwmbB1009
Carg06292	Watermelon (97103) v2	carwmbB1011