Carg06291 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06291
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Myb family transcription factor APL
Location	Cucurbita_argyrosperma_scaffold_016 : 762997 .. 765084 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTTTCGTTTTGATTTTATAATCTCCCACTCGCCGGAGCCAAAATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAGTGAGTTTGGTTTTCTTTTAGCTTTGTAATTGATGTTCTCTCTGTACAACGTTGCAATGTGTTGTATTGGTCTGCAAAAATGGTAGTGTTTTGGTGTGGTAATTTAGAAGTAATTTCTGTTGGTTTCATTTGAATTTTGGAGATATTGGTGTTTTTTGACTGTGGTGAAAAAGAATTTTAGTGTTAAATTTGGATGAGAAGTTTAATTTGGTGGGGTTTTTTTTGGATAAAAAGCTTTACCATTGGGTAAAAAAGAGTAGCAAGGGAGATTTTAATGATTGTGTTACTTGAAGCTGGCTTCAAGTTGGAGGAGGTGTTCTTACAAGGAAGAAGCCCTTTGGAGTGGGCAATGTTTCTTGCTATATCTCGGACATTTGGCTCGGGAAAACTAGGAGAACTCTTCGTAGAAGAACGTTTTTTCTTTGTTAGTTCAACGAGTGGGGGTGGGGGGTTCGAACGTCTGACCTTATGGTCAACGGTATATGCCTTAATTGGTTTAGCTTAGCTCGGGTTGACTAGAGACAAAATACTTGCTTACACTCCGCGAGTTGTAGGAGTTGTAAGAGCTCCTATTGACTAGTGTGTAGGTAAATGTTGTCCCGGTTAGAGGGTGGAGTACCCTCGGGGGAGGGGCTCATGGTCAATAGTATATGTCTTAATTGGTTTAGCTAAGCTCGGGTTGACTAGAGACAAAATACTTGCCTACATGCCACGGGTTGTAGGAGTTGTAGGAGCTCCTATTGACTAGTGTGTAGGTGAAATATTGTCCCGGTTAGAGGGTGGAGTACTCTCAGGGGAGGGGTTTGAACCTCTGACCTCGTGGTCAACGGTATATGCCTTAATTGGTTTAGCTAAGCTCGGGTTGACTAGAGACAAAATACTTGCCTACATGCCACGGGTTGTAGGAGTTGTAGGAGCTCCTATTGACTAGTGTGTAGGCAAAATATTGTCCCGGTTAGAGGGTGGAGTACCCTCAGGGGAGGGGTTTGAATCTCTGACCTCAACGATATATGCCTGGAGGGGTTTGAATCTCTGACCTTGTGGTCAACGGTATATGCCTTAATTGGTTTAGCTAAGCTCGGTTTGACTAGAGACAAAATACTTGCCTACACGCCACGTGTTGTAGGAGTTGTAGGAGCTCCTATTCACTAGTGTGTAGACGAATATTTCCCCGGTTCGACGGTGGAATACCCTTTGGGGAGATGTAGACAACAACTAGATTTAACTCCATTCGAGCGTTCGTAATCGAAGAACTTTGTGAATATCATTTGTCTATCGTCCTCGAAAACTATAGCCATTGGCTTGTTCGTGACCGAATAGTTTCGTAATTAAGTTGTTAGTTTCTTTTGTTTTGGTTTAGGTTGGTTTTTTTGGATGCCCATGTGTTTTATTTCATTGAAGTTAGGTTAGGTAGGTTACTTTGGCATATGTCGAAATATGCAATTCTTGCTCGGTCATGTTTTCGAGGGATTTTTAACGACGGAAGGTATGTTTAGGAGTGATTTTGAACCATGTCGACATCATTCTAGCGGATATCGAGCACAGCAACCTTACGAGAGATGTCCGGGTCAACGAATATACCTTATTTATTTCATAATATTCGAAATGCACTGTTGATCTCGATCATGATTTTCGTTTCTATATTCGTTTCAGAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGGTTTGTTCATATCGCCGTAATACCGAACAAGCTCGATACTTAACCTTTTTGTTCCGTTCGTTCGTGCGTGCGTGTGTGCAAATTTGA

mRNA sequence

TCATTTTCGTTTTGATTTTATAATCTCCCACTCGCCGGAGCCAAAATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGGTTTGTTCATATCGCCGTAATACCGAACAAGCTCGATACTTAACCTTTTTGTTCCGTTCGTTCGTGCGTGCGTGTGTGCAAATTTGA

Coding sequence (CDS)

ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGGTTTGTTCATATCGCCGTAATACCGAACAAGCTCGATACTTAACCTTTTTGTTCCGTTCGTTCGTGCGTGCGTGTGTGCAAATTTGA

Protein sequence

MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVCSYRRNTEQARYLTFLFRSFVRACVQI

Homology

[Close]

BLAST of Carg06291 vs. NCBI nr
Match: XP_022957549.1 (protein PHR1-LIKE 2-like [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 4.6e-52
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 118

[Close]

BLAST of Carg06291 vs. NCBI nr
Match: XP_022974989.1 (protein PHR1-LIKE 2-like [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 4.6e-52
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 118

[Close]

BLAST of Carg06291 vs. NCBI nr
Match: XP_023539057.1 (protein PHR1-LIKE 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 4.6e-52
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 118

[Close]

BLAST of Carg06291 vs. NCBI nr
Match: AXF54233.1 (MYB10 [Cucurbita pepo])

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPID-AGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAE 60
           MLSGFSQEPAGMYSAI ALP+D  GG GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAE
Sbjct: 1   MLSGFSQEPAGMYSAIPALPMDGGGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAE 60

Query: 61  LHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVCSYRRNTEQA 113
           LHERFVDAVTQLGG DKATPKTIMRTMGVKGLTLYHLKSHLQVCSYR  T++A
Sbjct: 61  LHERFVDAVTQLGGADKATPKTIMRTMGVKGLTLYHLKSHLQVCSYRHYTDRA 113

[Close]

BLAST of Carg06291 vs. NCBI nr
Match: XP_008438354.1 (PREDICTED: myb family transcription factor APL isoform X1 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 100/118 (84.75%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAI ALP+D GG GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAIPALPMDGGG-GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 117

[Close]

BLAST of Carg06291 vs. TAIR10
Match: AT3G24120.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-41
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 12  MYSAISALPIDAGGH--GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVT 71
           MYSAI +LP+D GGH  G + G LDGTNLPGDACLVLT+DPKPRLRWT ELHERFVDAVT
Sbjct: 1   MYSAIRSLPLD-GGHVGGDYHGPLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 60

Query: 72  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 91

[Close]

BLAST of Carg06291 vs. TAIR10
Match: AT4G13640.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-36
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 12  MYSAI-SALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQ 71
           MYSAI S+LP+D G  G +    DGTNLP DACLVLT+DPKPRLRWT+ELHERFVDAVTQ
Sbjct: 1   MYSAIRSSLPLD-GSLGDYS---DGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQ 60

Query: 72  LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 87

[Close]

BLAST of Carg06291 vs. TAIR10
Match: AT1G79430.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 8.7e-29
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 26  HGKFQGSLDGTN------LPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATP 85
           H K   S++G+       + GD+ LVLT+DPKPRLRWT ELHERFVDAV QLGGPDKATP
Sbjct: 3   HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATP 62

Query: 86  KTIMRTMGVKGLTLYHLKSHLQ 102
           KTIMR MGVKGLTLYHLKSHLQ
Sbjct: 63  KTIMRVMGVKGLTLYHLKSHLQ 84

[Close]

BLAST of Carg06291 vs. TAIR10
Match: AT3G12730.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 44  LVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           LVLT+DPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMR MGVKGLTLYHLKSHLQ
Sbjct: 16  LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of Carg06291 vs. TAIR10
Match: AT3G04030.3 (Homeodomain-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 37  NLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHL 96
           N PGD+ L+L++D KPRL+WT +LHERF++AV QLGG DKATPKTIM+ MG+ GLTLYHL
Sbjct: 31  NSPGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHL 90

Query: 97  KSHLQVCSYRRN 109
           KSHLQ     +N
Sbjct: 91  KSHLQKYRLSKN 102

[Close]

BLAST of Carg06291 vs. Swiss-Prot
Match: sp|Q94A57|PHL2_ARATH (Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-40
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 12  MYSAISALPIDAGGH--GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVT 71
           MYSAI +LP+D GGH  G + G LDGTNLPGDACLVLT+DPKPRLRWT ELHERFVDAVT
Sbjct: 1   MYSAIRSLPLD-GGHVGGDYHGPLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 60

Query: 72  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 91

[Close]

BLAST of Carg06291 vs. Swiss-Prot
Match: sp|Q8LAJ7|PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 12  MYSAI-SALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQ 71
           MYSAI S+LP+D G  G +    DGTNLP DACLVLT+DPKPRLRWT+ELHERFVDAVTQ
Sbjct: 1   MYSAIRSSLPLD-GSLGDYS---DGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQ 60

Query: 72  LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 87

[Close]

BLAST of Carg06291 vs. Swiss-Prot
Match: sp|Q9SAK5|APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-27
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 26  HGKFQGSLDGTN------LPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATP 85
           H K   S++G+       + GD+ LVLT+DPKPRLRWT ELHERFVDAV QLGGPDKATP
Sbjct: 3   HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATP 62

Query: 86  KTIMRTMGVKGLTLYHLKSHLQ 102
           KTIMR MGVKGLTLYHLKSHLQ
Sbjct: 63  KTIMRVMGVKGLTLYHLKSHLQ 84

[Close]

BLAST of Carg06291 vs. Swiss-Prot
Match: sp|Q8VYI2|PHLC_ARATH (Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 44  LVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           LVLT+DPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMR MGVKGLTLYHLKSHLQ
Sbjct: 16  LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of Carg06291 vs. Swiss-Prot
Match: sp|Q9SQQ9|PHL9_ARATH (Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-23
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 37  NLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHL 96
           N PGD+ L+L++D KPRL+WT +LHERF++AV QLGG DKATPKTIM+ MG+ GLTLYHL
Sbjct: 31  NSPGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHL 90

Query: 97  KSHLQVCSYRRN 109
           KSHLQ     +N
Sbjct: 91  KSHLQKYRLSKN 102

[Close]

BLAST of Carg06291 vs. TrEMBL
Match: tr|A0A1S3AWU1|A0A1S3AWU1_CUCME (myb family transcription factor APL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-48
Identity = 100/118 (84.75%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAI ALP+D GG GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAIPALPMDGGG-GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 117

[Close]

BLAST of Carg06291 vs. TrEMBL
Match: tr|A0A0A0L435|A0A0A0L435_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130900 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-48
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYS I+ALP+D GG GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSTITALPMDGGG-GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVC-----SYRRNTEQAR 114
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ       S++ +TE ++
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSK 117

[Close]

BLAST of Carg06291 vs. TrEMBL
Match: tr|A0A1S3AWT2|A0A1S3AWT2_CUCME (myb family transcription factor APL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.5e-48
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60
           MLSGFSQEPAGMYSAI ALP+D GG GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL
Sbjct: 1   MLSGFSQEPAGMYSAIPALPMDGGG-GKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAEL 60

Query: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  HERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 100

[Close]

BLAST of Carg06291 vs. TrEMBL
Match: tr|A0A2P5F3X6|A0A2P5F3X6_9ROSA (Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_116040 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-41
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 12  MYSAISALPID--AGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVT 71
           MYSAI +LP+D   GGHG FQGSLDGTNLPGDACLVLT+DPKPRLRWTAELHERFVDAVT
Sbjct: 1   MYSAIHSLPLDGVVGGHGDFQGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVT 60

Query: 72  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 92

[Close]

BLAST of Carg06291 vs. TrEMBL
Match: tr|A0A2P5CRT1|A0A2P5CRT1_PARAD (Octamer-binding transcription factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_128870 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-41
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 12  MYSAISALPID--AGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVT 71
           MYSAI +LP+D   GGHG FQGSLDGTNLPGDACLVLT+DPKPRLRWTAELHERFVDAVT
Sbjct: 1   MYSAIHSLPLDGVVGGHGDFQGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVT 60

Query: 72  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 102
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ
Sbjct: 61  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 92

The following BLAST results are available for this feature:

BLAST of Carg06291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957549.1	4.6e-52	88.14	protein PHR1-LIKE 2-like [Cucurbita moschata]	[more]
XP_022974989.1	4.6e-52	88.14	protein PHR1-LIKE 2-like [Cucurbita maxima]	[more]
XP_023539057.1	4.6e-52	88.14	protein PHR1-LIKE 2-like [Cucurbita pepo subsp. pepo]	[more]
AXF54233.1	2.3e-51	91.15	MYB10 [Cucurbita pepo]	[more]
XP_008438354.1	3.1e-48	84.75	PREDICTED: myb family transcription factor APL isoform X1 [Cucumis melo]	[more]

BLAST of Carg06291 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24120.2	2.0e-41	86.96	Homeodomain-like superfamily protein	[more]
AT4G13640.2	1.5e-36	83.52	Homeodomain-like superfamily protein	[more]
AT1G79430.2	8.7e-29	73.17	Homeodomain-like superfamily protein	[more]
AT3G12730.1	1.4e-26	91.38	Homeodomain-like superfamily protein	[more]
AT3G04030.3	1.3e-24	66.67	Homeodomain-like superfamily protein	[more]

BLAST of Carg06291 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94A57\|PHL2_ARATH	3.6e-40	86.96	Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1	[more]
sp\|Q8LAJ7\|PHL3_ARATH	2.7e-35	83.52	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1	[more]
sp\|Q9SAK5\|APL_ARATH	1.6e-27	73.17	Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 ...	[more]
sp\|Q8VYI2\|PHLC_ARATH	2.5e-25	91.38	Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 P...	[more]
sp\|Q9SQQ9\|PHL9_ARATH	2.3e-23	66.67	Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1	[more]

BLAST of Carg06291 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWU1\|A0A1S3AWU1_CUCME	2.0e-48	84.75	myb family transcription factor APL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L435\|A0A0A0L435_CUCSA	3.5e-48	83.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130900 PE=4 SV=1	[more]
tr\|A0A1S3AWT2\|A0A1S3AWT2_CUCME	4.5e-48	96.04	myb family transcription factor APL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2P5F3X6\|A0A2P5F3X6_9ROSA	3.1e-41	91.30	Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]
tr\|A0A2P5CRT1\|A0A2P5CRT1_PARAD	3.1e-41	91.30	Octamer-binding transcription factor OS=Parasponia andersonii OX=3476 GN=PanWU01...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb
IPR006447	Myb_dom_plants

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06291-RA	Carg06291-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 47..112 e-value: 7.3E-25 score: 88.7
None	No IPR available	PANTHER	PTHR31499:SF6	PROTEIN PHR1-LIKE 2-RELATED	coord: 12..103
None	No IPR available	PANTHER	PTHR31499	FAMILY NOT NAMED	coord: 12..103
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 51..102 e-value: 2.4E-22 score: 77.0
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 53..101 e-value: 5.7E-8 score: 32.7
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 48..110 score: 9.923
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 51..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06291	ClCG05G003320	Watermelon (Charleston Gray)	carwcgB0935
Carg06291	CmaCh06G012280	Cucurbita maxima (Rimu)	carcmaB1324
Carg06291	CmoCh06G012530	Cucurbita moschata (Rifu)	carcmoB1288
Carg06291	Lsi05G018380	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06291	Cp4.1LG08g02780	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06291	MELO3C006313.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06291	Cla97C05G083960	Watermelon (97103) v2	carwmbB1008
Carg06291	Bhi01G000162	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06291	Carg24763	Silver-seed gourd	carcarB211

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06291	Melon (DHL92) v3.6.1	carmedB0945
Carg06291	Watermelon (Charleston Gray)	carwcgB0936
Carg06291	Watermelon (Charleston Gray)	carwcgB0938
Carg06291	Watermelon (97103) v1	carwmB0962
Carg06291	Watermelon (97103) v1	carwmB0961
Carg06291	Watermelon (97103) v2	carwmbB1009
Carg06291	Watermelon (97103) v2	carwmbB1011
Carg06291	Wax gourd	carwgoB1114
Carg06291	Wax gourd	carwgoB1123
Carg06291	Silver-seed gourd	carcarB266
Carg06291	Cucumber (Gy14) v1	carcgyB1077
Carg06291	Silver-seed gourd	carcarB610
Carg06291	Silver-seed gourd	carcarB649
Carg06291	Cucumber (Gy14) v2	carcgybB0946
Carg06291	Cucumber (Gy14) v2	carcgybB0947
Carg06291	Cucumber (Gy14) v2	carcgybB0948
Carg06291	Cucumber (Gy14) v1	carcgyB1078
Carg06291	Cucurbita maxima (Rimu)	carcmaB1320
Carg06291	Cucurbita maxima (Rimu)	carcmaB1321
Carg06291	Cucurbita maxima (Rimu)	carcmaB1322
Carg06291	Cucurbita maxima (Rimu)	carcmaB1323
Carg06291	Cucurbita maxima (Rimu)	carcmaB1325
Carg06291	Cucurbita maxima (Rimu)	carcmaB1327
Carg06291	Cucurbita moschata (Rifu)	carcmoB1284
Carg06291	Cucurbita moschata (Rifu)	carcmoB1285
Carg06291	Cucurbita moschata (Rifu)	carcmoB1287
Carg06291	Cucurbita moschata (Rifu)	carcmoB1289
Carg06291	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06291	Cucurbita pepo (Zucchini)	carcpeB1329
Carg06291	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06291	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06291	Cucurbita pepo (Zucchini)	carcpeB1332
Carg06291	Wild cucumber (PI 183967)	carcpiB0997
Carg06291	Wild cucumber (PI 183967)	carcpiB0998
Carg06291	Wild cucumber (PI 183967)	carcpiB0996
Carg06291	Cucumber (Chinese Long) v2	carcuB0975
Carg06291	Cucumber (Chinese Long) v3	carcucB1002
Carg06291	Cucumber (Chinese Long) v3	carcucB1003
Carg06291	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06291	Melon (DHL92) v3.5.1	carmeB0939
Carg06291	Melon (DHL92) v3.5.1	carmeB0941