Carg06016 (gene) Silver-seed gourd

Overview
NameCarg06016
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionthylakoid lumenal 15 kDa protein 1, chloroplastic
LocationCucurbita_argyrosperma_scaffold_026 : 689161 .. 691572 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAAGAAAAGAAAAGAAATCTGGGAAGAACTGCAGCTTTGGAAATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGAACTCACCTTCCTCTTCCTCCCTCTATTTCCGCCTTTTCCAATCCTCAGGTAAACTTCACCTCTCAATTTCTTCTCTGCTTCTCTCATTTTGTACTGAAATGCTATGATTGCGACCAAAAAAATGAAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGTTAAATTGTTAAGCGTATATATCTTTCTTGTTCTGATTGTTTCGAGTGAATGTCTGTTGTTATATCTCTGTATTTGAAGCCGCTTCAATCTGATCATTCACTGATTTTGGGTGAACGGATTCGATTTCGTAATTAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGGTTTCTCCCTTTTCAAACAAATTCAATTTTTCCTCATGTTGTGTTTCTGAAATAGCTTTACGTTTCTTTTCTCACCAGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTCGTTGTTTCAGTGTTCGTAAGTAATTTTTATGAACTGCCAACTCTTCCTTGGAGAACAAATTCCCATTAAAGCTGAGTTCAATTGTTTCTTTCTTTGCCTAATTGTTAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGTGATGTATGTTTATTCCTGTTAACAGTATCATCTTTAGTTGATTTCAATCTCATTCTATGCACAAAGTAGGTTATGTGATGCATTGAAATCTGCAGTTTCTATCTGAGATTTTCCATTCAAGTTTTGGTTCATGTTGTGCTTTGATCTTAGAAGCCAATGAAATTATAGTCTTTATCCTCGATGGTTTCTTCTACTTTCGGCAGGCAAATTTAAGAAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGGTATGTATGTAAAGCTAACATTTATGTAGCTTTTAGTATTTCAAGGGCGATCCTCTCTCCAAAATTGTCTTAGTTAATAAAAGACATTAATATAGGTTGTTACTCCAACCCCTCTATTTTTATCAAATTTGAAATTCTAAACCTATAGCTCTAGTGTAACAACCCAAGTCTATTGGAAATCGATATTGTCCGCTTTGGTCGGTTACGTATTGTCATTTGTTTCACGATTCTAAAATGTGTCTAGGAGAGGTTTCCACACCCTTATAAGCAATGCTTCATTTCCCTTTCTAACCAATGTAGGATCTCACAATCCCAGACGTGCCTTTGCGAGATCCCAGATACGATTTTAAAACGCGTCTACTAAGAAGACACCATGCTATAAAGGGGGTGGATTGTGAGATCCTACATTGATTGGAGAGGGGAAAGAAGCATTCATTATAAGGGTTTGGAAACCTCTCCTTAGTAGACGCGTTTTCAAACTGTGAGACTAACGATAATATGTAACGGGCCAAAGTGAACAACATTTGCTAGCGATGAGCTTGAACCGTTACATTTAGTTACTCGTGTTAGGGGTGCAAACAAACTGTCACATTCGTTAGAAAAAGGAGTAATCTTAGGTAGATAAGGAAGGACAAATATCTCTATGAGGAAATACTGATGGTTAATTCATCTCATGATGTCAGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGTAAACAATACTTTCCTCTGTTCTCAAAATGGTTCAATAAAGATTAAAGAAAACATTTTAGATCCTTGAACTTTGATGAAAGTAACAATTTAGTCACTTTAACTTCAAATGTTACATGAAAGTAACATTTTGGATCCTTAAACTTCCATGAAAGTGGTTTTTACTGGTAAATAAACTAATGAACTCAGTCCTTTCTGTTGACAGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGAGAGTCGAATAATATGGCGAGCTACTAAGGTACAAAGAATCATAAAGATTTACCTTAAAATGTAATGAATTTAATAACTATGTGAGTATCTAATCCAATGAGTTCAGTTTTGTCATTCTTCTGTTAATATCTCCTCATACCCTGTTTTCGCGGCTTGTCCATATCATAAAGCTTATGAAAAGTAACACATTCGAAGAATCAGAACACATTGGA

mRNA sequence

AGAAAAGAAAAGAAAAGAAATCTGGGAAGAACTGCAGCTTTGGAAATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGAACTCACCTTCCTCTTCCTCCCTCTATTTCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGAAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGAGAGTCGAATAATATGGCGAGCTACTAAGGTACAAAGAATCATAAAGATTTACCTTAAAATGTAATGAATTTAATAACTATGTGAGTATCTAATCCAATGAGTTCAGTTTTGTCATTCTTCTGTTAATATCTCCTCATACCCTGTTTTCGCGGCTTGTCCATATCATAAAGCTTATGAAAAGTAACACATTCGAAGAATCAGAACACATTGGA

Coding sequence (CDS)

ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGAACTCACCTTCCTCTTCCTCCCTCTATTTCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGAAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA

Protein sequence

MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLRNANLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN
Homology
[Close]
BLAST of Carg06016 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 7.7e-68
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPS+SAFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LATGNTSFRGSIING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]
BLAST of Carg06016 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 7.7e-68
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPS+SAFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQTMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LATGNTSFRGSIING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]
BLAST of Carg06016 vs. NCBI nr
Match: XP_022991096.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 213/218 (97.71%), Postives = 215/218 (98.62%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR+HLPLPPSI AFSNP+AMKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIPAFSNPRAMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LATGNTSFRGSIING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]
BLAST of Carg06016 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 2.9e-67
Identity = 213/218 (97.71%), Postives = 213/218 (97.71%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPSISA SNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSISALSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LATGNTSFRGSIING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]
BLAST of Carg06016 vs. NCBI nr
Match: XP_022991097.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 212/218 (97.25%), Postives = 214/218 (98.17%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR+HLPLPPSI AFSNP+ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIPAFSNPRVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LATGNTSFRGSIING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]
BLAST of Carg06016 vs. TAIR10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-23
Identity = 146/224 (65.18%), Postives = 157/224 (70.09%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAF-----SNPQAMKHQVEA-TRNFVLSVGESA 60
           M +L+     S C I  +  L  P S S+      S  Q  K  V +  R+ V S+GE  
Sbjct: 1   MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 60

Query: 61  SKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXX 120
           SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKD  XXXXXXXXXXXXXXXX
Sbjct: 61  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFR 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 GSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
                      VPLR+DQR YLCKVADGVN  TGNATR+TLLCN
Sbjct: 181 XXXXXXXXXXXVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]
BLAST of Carg06016 vs. Swiss-Prot
Match: sp|O22160|TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 9.7e-22
Identity = 146/224 (65.18%), Postives = 157/224 (70.09%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAF-----SNPQAMKHQVEA-TRNFVLSVGESA 60
           M +L+     S C I  +  L  P S S+      S  Q  K  V +  R+ V S+GE  
Sbjct: 1   MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 60

Query: 61  SKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXX 120
           SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKD  XXXXXXXXXXXXXXXX
Sbjct: 61  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFR 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 GSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
                      VPLR+DQR YLCKVADGVN  TGNATR+TLLCN
Sbjct: 181 XXXXXXXXXXXVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]
BLAST of Carg06016 vs. Swiss-Prot
Match: sp|P82657|TL11_SPIOL (Thylakoid lumenal 11 kDa protein (Fragment) OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0 

Query: 76 FKGGGPYGAGVTRGQDLTGKDF 98
          FKGGGPYG GVTRGQDL+GKDF
Sbjct: 1  FKGGGPYGQGVTRGQDLSGKDF 22

[Close]
BLAST of Carg06016 vs. TrEMBL
Match: tr|A0A0A0KA71|A0A0A0KA71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 183/218 (83.94%), Postives = 193/218 (88.53%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLC ST +IPSR+HL LPPSIS  S  Q    Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GK   XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TGNTSFRGS ING
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNTSFRGSTING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

[Close]
BLAST of Carg06016 vs. TrEMBL
Match: tr|A0A1S3B3C6|A0A1S3B3C6_CUCME (thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485520 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 181/220 (82.27%), Postives = 189/220 (85.91%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSIS--AFSNPQAMKHQVEATRNFVLSVGESASKAS 60
           MALLNASLC ST +I SR+HL LPPSIS    S  Q    Q+EATRN VLS+G+     +
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQ----PT 60

Query: 61  FLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXX 120
           FL  ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKD  XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSII 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NTSFRGS I
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSFRGSTI 180

Query: 181 NGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           NGADFTDVPLREDQREYLCKVADGVNP TGNATRETLLC+
Sbjct: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]
BLAST of Carg06016 vs. TrEMBL
Match: tr|A0A2P6SKR3|A0A2P6SKR3_ROSCH (Putative pentapeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0368241 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.0e-41
Identity = 168/217 (77.42%), Postives = 181/217 (83.41%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLN S+CS     PSR HL    S+S +  PQ +K Q EA+RN  L +GES  KAS +
Sbjct: 1   MALLNISMCSKIPN-PSRQHL----SLSGYPPPQVLKTQSEASRNLALQIGESVCKASLI 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120
           A +SASLF ADPALA+ GGGPYG+ VTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  AALSASLFAADPALAYIGGGPYGSEVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIING 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A  TGNTSF+GS I G
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAFTTGNTSFKGSTITG 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
           ADFTDVPLR+DQREYLCK+ADGVNP TGN TRETL C
Sbjct: 181 ADFTDVPLRDDQREYLCKIADGVNPTTGNETRETLFC 212

[Close]
BLAST of Carg06016 vs. TrEMBL
Match: tr|A0A1J6IG06|A0A1J6IG06_NICAT (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Nicotiana attenuata OX=49451 GN=A4A49_17602 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 171/221 (77.38%), Postives = 188/221 (85.07%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLP-PSISAFS--NPQAMKHQVEATRNFVLSVGESASKA 60
           MA+ +  LC      P++   P P P    FS  +PQ   + VE++RN ++S GES S+A
Sbjct: 1   MAIPSVWLCPKLPPNPNKLQSPNPFPLTHQFSSFSPQVSLNSVESSRNALVSFGESISRA 60

Query: 61  SFLALISASLFLA-DPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXX 120
           SFLAL+SASLFLA DPALAFKGGGPYGAGVTRGQDLTGKDF XXXXXXXXXXXXXXXXXX
Sbjct: 61  SFLALLSASLFLASDPALAFKGGGPYGAGVTRGQDLTGKDFXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AL TGNTSF+GS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALTTGNTSFKGS 180

Query: 181 IINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
            I GADFTDVPLR+DQREYLCK+ADGVNP+TGNATR+TLLC
Sbjct: 181 NIEGADFTDVPLRDDQREYLCKIADGVNPVTGNATRDTLLC 221

[Close]
BLAST of Carg06016 vs. TrEMBL
Match: tr|K4CA08|K4CA08_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.5e-39
Identity = 167/218 (76.61%), Postives = 185/218 (84.86%), Query Frame = 0 

Query: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MA+L+   C S  ++PS   L  PP     ++  ++K   E++RN  +S+ ES S+ASFL
Sbjct: 1   MAILSFCFCCS--KLPSNPKLHFPPQTHQATSQVSLK-SAESSRNGFISLSESISRASFL 60

Query: 61  ALISASLFLA-DPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXX 120
           AL+SASLF A DPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALLSASLFFASDPALAFKGGGPYGAGVTRGQDLTGKDFSXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALATGNTSFRGSIIN 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AL TGNTSF+GS+I 
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGALTTGNTSFKGSVIQ 180

Query: 181 GADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
           GADFTDVPLREDQREYLCK ADG+N +TGNATRETLLC
Sbjct: 181 GADFTDVPLREDQREYLCKFADGLNTVTGNATRETLLC 215

The following BLAST results are available for this feature:
BLAST of Carg06016 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955559.17.7e-6897.71thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata... [more]
XP_022955551.17.7e-6897.71thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata... [more]
XP_022991096.11.3e-6797.71thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita maxima][more]
XP_023552471.12.9e-6797.71thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022991097.13.8e-6797.25thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima][more]
BLAST of Carg06016 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44920.25.4e-2365.18Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg06016 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22160|TL15A_ARATH9.7e-2265.18Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
sp|P82657|TL11_SPIOL1.8e-0490.91Thylakoid lumenal 11 kDa protein (Fragment) OS=Spinacia oleracea OX=3562 PE=1 SV... [more]
BLAST of Carg06016 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA71|A0A0A0KA71_CUCSA2.6e-4883.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1[more]
tr|A0A1S3B3C6|A0A1S3B3C6_CUCME2.3e-4482.27thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A2P6SKR3|A0A2P6SKR3_ROSCH7.0e-4177.42Putative pentapeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0368241 PE=4 S... [more]
tr|A0A1J6IG06|A0A1J6IG06_NICAT1.7e-3977.38Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Nicotiana attenuata OX=4945... [more]
tr|K4CA08|K4CA08_SOLLC8.5e-3976.61Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06016-RACarg06016-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.160.20.100coord: 75..218
e-value: 3.1E-59
score: 200.4
NoneNo IPR availablePANTHERPTHR14136:SF17THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTICcoord: 86..218
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 86..218
NoneNo IPR availableSUPERFAMILYSSF141571Pentapeptide repeat-likecoord: 87..189
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 110..148
e-value: 1.1E-12
score: 47.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06016Cla006544Watermelon (97103) v1carwmB0024
Carg06016Csa6G008700Cucumber (Chinese Long) v2carcuB0023
Carg06016MELO3C008233Melon (DHL92) v3.5.1carmeB0023
Carg06016ClCG11G006700Watermelon (Charleston Gray)carwcgB0019
Carg06016CSPI06G01200Wild cucumber (PI 183967)carcpiB0024
Carg06016Cucsa.136180Cucumber (Gy14) v1carcgyB0019
Carg06016CmoCh04G030660Cucurbita moschata (Rifu)carcmoB0033
Carg06016Lsi03G003600Bottle gourd (USVL1VR-Ls)carlsiB017
Carg06016Cp4.1LG01g25560Cucurbita pepo (Zucchini)carcpeB0034
Carg06016CsGy6G001240Cucumber (Gy14) v2carcgybB0023
Carg06016MELO3C008233.2Melon (DHL92) v3.6.1carmedB0024
Carg06016CsaV3_6G001320Cucumber (Chinese Long) v3carcucB0024
Carg06016Cla97C11G213660Watermelon (97103) v2carwmbB0015
Carg06016Bhi04G001946Wax gourdcarwgoB0022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06016Silver-seed gourdcarcarB016
Carg06016Silver-seed gourdcarcarB020
Carg06016Silver-seed gourdcarcarB023
Carg06016Silver-seed gourdcarcarB025
Carg06016Silver-seed gourdcarcarB026
Carg06016Cucumber (Gy14) v2carcgybB0018
Carg06016Cucumber (Gy14) v1carcgyB0022
Carg06016Cucurbita maxima (Rimu)carcmaB0028
Carg06016Cucurbita maxima (Rimu)carcmaB0030
Carg06016Cucurbita maxima (Rimu)carcmaB0031
Carg06016Cucurbita maxima (Rimu)carcmaB0033
Carg06016Cucurbita maxima (Rimu)carcmaB0034
Carg06016Cucurbita maxima (Rimu)carcmaB0035
Carg06016Cucurbita moschata (Rifu)carcmoB0029
Carg06016Cucurbita moschata (Rifu)carcmoB0031
Carg06016Cucurbita moschata (Rifu)carcmoB0034
Carg06016Cucurbita pepo (Zucchini)carcpeB0031
Carg06016Cucurbita pepo (Zucchini)carcpeB0035
Carg06016Cucurbita pepo (Zucchini)carcpeB0036
Carg06016Wild cucumber (PI 183967)carcpiB0019
Carg06016Cucumber (Chinese Long) v2carcuB0019
Carg06016Cucumber (Chinese Long) v3carcucB0019
Carg06016Bottle gourd (USVL1VR-Ls)carlsiB020
Carg06016Melon (DHL92) v3.5.1carmeB0024
Carg06016Melon (DHL92) v3.6.1carmedB0025
Carg06016Watermelon (Charleston Gray)carwcgB0018
Carg06016Watermelon (Charleston Gray)carwcgB0025
Carg06016Watermelon (97103) v1carwmB0017
Carg06016Watermelon (97103) v2carwmbB0014
Carg06016Watermelon (97103) v2carwmbB0022