CSPI06G01200 (gene) Wild cucumber (PI 183967)

NameCSPI06G01200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentapeptide repeat-containing protein
LocationChr6 : 866280 .. 868525 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTTTTCCAGATTATCCAATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTAACCTCCCCTTCTCCCTTCCCACTCCCATTTTCTTCTCCTTTATCTTCCAATGCTTTCATTTTACCCACTATATGAAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTCATTTCCTCATTTTCATTCTCATTTCTCTATTGTATTCTACTCTACTGTATGGTTGATTTTTGGCTATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGGTTTCAACCGAAGTTTCATTATTTCTATTGTTTCTACTTGTACTACAGTAATATGTGGTTGTGACATTGCTCTTATTTTTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATAATTCAGGATTTTCTATCCAGTTAATGCCGACTTCTATTGTTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTACAATTAAATGCTTCTTTGTTTAATCTTTAGTTTGCTCCTTTTCAGATTTTCAAATTTGAATGATTGTATTATTATATACATAACAAGTTAGTTAGGACTGGAGGTCAAATTTTGCAATCTCAGTCTTGAATGTTAAAAAATTTGCTCAATTACGATAGGAAACTACTTAGCAAAAAGTATTCATGTGATACAACAACCACGAACTTTGTATGCAGTTTGAGATGCAGAGTAACCTACAGTTTTTATCTGCGGTTTTACATGCAAGCGCTGTGCTTTGATGTTAGAATACAGTGAAGTTGTAACTTTATACTGAATGGTTGTTTTTTTCTGCTTTGAGCAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGGTATGGAAACCCAACATCTATTTTGCTTTTAGTATCTCATCGGGGATCCTCTTTTTTTTTTTTATCCGTTTACTCTCTCCCCCCACGTTCAATTAATACTTTATATATTTTCCAAAGGTACTCTATACATATTTGAAAGCTTCTATTAGTTCCTTATAAGACCTAAAAGTCGAGTTTAGGAGATTTGAAAGGCGAGAATGGCCAAGATTGATCTTAGATACACAAATAGAATCTGATTCTCTTTTTCATAGTATATTTCTTGTAAACCCAACATTTATGTGCTTTTAGTATCTCATTGGGGATTCTCTCATATCCATAATTATTTTAGATGCCATGAGGCATTAACATAGGTTATTATTCCAACCTCTCTATGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCTGAAACTCATTTTTGTCAGCAATGTTCTTAGACGAAAGAGTAATAGGAAAATGCAATTCAACTAACAATGGATATAATTTTCTGAAAACTAACAATGGATATAATTTTCTGAAAACTAACAATGGGGTGGTTGTACGAAGAAATACTTGTGCATAATTTACCTCATAATGGCAGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAAACAAATTCTTGTGTTTCTTAGGTTTGACTGTAAATGGTTCATGATAAATAGAACAGGAAACTTATTCATTTTTGTTTACAGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGAGACTCAAATTAGATGGCAAGCTATTGAACTACAAGAATCGTACAGATCAACTTAAAAATGTATAAAGTTTTCAATAACAATATCAGTATATTCAATCCAATGAGTTCAATTTTGTCATTC

mRNA sequence

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Coding sequence (CDS)

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 9.2e-74
Identity = 156/224 (69.64%), Postives = 170/224 (75.89%), Query Frame = 1

Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSAS F  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

BLAST of CSPI06G01200 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1

Query: 115 LSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLAN 174
           L G+DFSGK+L    F  + L  +NF  A+L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 175 VTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 234
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 235 RETLLC 241
           RE+L C
Sbjct: 174 RESLGC 178

BLAST of CSPI06G01200 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1

Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

BLAST of CSPI06G01200 vs. Swiss-Prot
Match: FIP2_ARATH (FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 1

Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

BLAST of CSPI06G01200 vs. Swiss-Prot
Match: Y1819_SYNY3 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1819 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1

Query: 112 GQDLSGKDFSGKTL---------IKQDFK-------TSILRQANFKGANLLGASFFDADL 171
           G DL G D SG TL         ++Q+ K        +IL +A+ +GAN+ G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 172 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPL 212
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

BLAST of CSPI06G01200 vs. TrEMBL
Match: A0A0A0KA71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 7.0e-113
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 87
           MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 60

Query: 88  ASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 147
           AS FLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG
Sbjct: 61  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 120

Query: 148 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 207
           ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT
Sbjct: 121 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 180

Query: 208 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           DVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

BLAST of CSPI06G01200 vs. TrEMBL
Match: M5XKK0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011122mg PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 6.6e-79
Identity = 164/227 (72.25%), Postives = 182/227 (80.18%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIPS---------RSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLG 87
           MA+LN SLC   P  P          R HL    S+S +   QV    L+A+RN VLS+G
Sbjct: 1   MAVLNVSLCSKLPPKPPLSSPNPHPFRQHL----SLSGYPAPQVVKNHLEASRNVVLSVG 60

Query: 88  ----QPTFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSI 147
               + + +A +SAS F+A+PALAFKGGGPYG+ VTRGQDLSGKDFSGKTLIKQDFKTSI
Sbjct: 61  DSVCKASLIALLSASLFVANPALAFKGGGPYGSEVTRGQDLSGKDFSGKTLIKQDFKTSI 120

Query: 148 LRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNT 207
           LRQANF+GA LLGASFFDADLTGADLSDADLRG DFSLANVTKANLSNA LEGALATGNT
Sbjct: 121 LRQANFRGAKLLGASFFDADLTGADLSDADLRGVDFSLANVTKANLSNALLEGALATGNT 180

Query: 208 SFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           SF+GS I GADFTDVPLREDQREYLC++ADGVNPTTGN TRETLLC+
Sbjct: 181 SFKGSNITGADFTDVPLREDQREYLCRIADGVNPTTGNPTRETLLCN 223

BLAST of CSPI06G01200 vs. TrEMBL
Match: A0A059BHI1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02956 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78
Identity = 163/219 (74.43%), Postives = 178/219 (81.28%), Query Frame = 1

Query: 28  MALLNASLCCS-----TPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTF 87
           MALL  SLC S     +P +PS+S  L   S+ + S S    + L +      S+ +   
Sbjct: 1   MALLGVSLCASKVPPNSPLLPSKSLPLQISSLPICSDSPPLVRNLASPLALCESVARTGA 60

Query: 88  LAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKG 147
           LA +SAS F ADPALAFKGGGPYGAGVTRGQDL+G+DFSGKTLIKQDFKTSILRQANFKG
Sbjct: 61  LALLSASLFFADPALAFKGGGPYGAGVTRGQDLTGQDFSGKTLIKQDFKTSILRQANFKG 120

Query: 148 ANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIN 207
           A LLGASFFDADLTGADLSDADLRG DFSLANVTK NL+NANLEGALATGNTSFRGS I 
Sbjct: 121 AKLLGASFFDADLTGADLSDADLRGVDFSLANVTKVNLNNANLEGALATGNTSFRGSNIT 180

Query: 208 GADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GADFTDVPLR+DQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 GADFTDVPLRDDQREYLCKVADGVNPTTGNATRETLLCN 219

BLAST of CSPI06G01200 vs. TrEMBL
Match: K4CA08_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78
Identity = 163/219 (74.43%), Postives = 181/219 (82.65%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MA+L+   CCS  K+PS   L  PP     +TSQV  +  +++RN  +SL +     +FL
Sbjct: 1   MAILSFCFCCS--KLPSNPKLHFPPQTH-QATSQVSLKSAESSRNGFISLSESISRASFL 60

Query: 88  AFVSAS-FFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKG 147
           A +SAS FF +DPALAFKGGGPYGAGVTRGQDL+GKDFSGK+LIKQDFKTSILRQANFKG
Sbjct: 61  ALLSASLFFASDPALAFKGGGPYGAGVTRGQDLTGKDFSGKSLIKQDFKTSILRQANFKG 120

Query: 148 ANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIN 207
           A LLGASFFDADLTGADLSDADLRGADFSLANVTK NLSNANLEGAL TGNTSF+GS I 
Sbjct: 121 AKLLGASFFDADLTGADLSDADLRGADFSLANVTKVNLSNANLEGALTTGNTSFKGSVIQ 180

Query: 208 GADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GADFTDVPLREDQREYLCK ADG+N  TGNATRETLLC+
Sbjct: 181 GADFTDVPLREDQREYLCKFADGLNTVTGNATRETLLCE 216

BLAST of CSPI06G01200 vs. TrEMBL
Match: D7TLP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02090 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 167/221 (75.57%), Postives = 178/221 (80.54%), Query Frame = 1

Query: 30  LLNASLCCSTPKIPS-RSHLLLPPSISLHSTSQVFNQQLQATR-----NFV---LSLGQP 89
           LLN SL    P  P  + HL  P     H  S +F+    AT      NF    LS+ + 
Sbjct: 4   LLNVSLSSKLPPFPILKPHLSFPKP---HLNSSLFHNTNSATPQGNGINFDHLHLSVTRG 63

Query: 90  TFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANF 149
           +F+A +SAS F  DPALAFKGGGPYGA VTRGQDL+GKDFSGK+LIKQDFKTSILRQANF
Sbjct: 64  SFVALLSASLFFVDPALAFKGGGPYGAEVTRGQDLTGKDFSGKSLIKQDFKTSILRQANF 123

Query: 150 KGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGST 209
           KGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 124 KGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 183

Query: 210 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           I GADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 184 ITGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 221

BLAST of CSPI06G01200 vs. TAIR10
Match: AT2G44920.2 (AT2G44920.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 278.1 bits (710), Expect = 5.2e-75
Identity = 156/224 (69.64%), Postives = 170/224 (75.89%), Query Frame = 1

Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSAS F  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

BLAST of CSPI06G01200 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1

Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

BLAST of CSPI06G01200 vs. TAIR10
Match: AT5G55000.2 (AT5G55000.2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-09
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 1

Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|449441422|ref|XP_004138481.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 1.0e-112
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 87
           MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 60

Query: 88  ASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 147
           AS FLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG
Sbjct: 61  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 120

Query: 148 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 207
           ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT
Sbjct: 121 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 180

Query: 208 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           DVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|659081552|ref|XP_008441390.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106
Identity = 205/216 (94.91%), Postives = 208/216 (96.30%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISL--HSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SAS FLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|645255790|ref|XP_008233656.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Prunus mume])

HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79
Identity = 165/227 (72.69%), Postives = 182/227 (80.18%), Query Frame = 1

Query: 28  MALLNASLCCSTPKIP---------SRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLG 87
           MA+LN SLC   P  P         SR HL L    S +   QV    L+A+RN VLS+G
Sbjct: 1   MAVLNVSLCSKLPPKPPLYSSNPHPSRQHLYL----SGYPAPQVVKNHLEASRNVVLSVG 60

Query: 88  ----QPTFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSI 147
               + + +A +SAS F+A+PALAFKGGGPYG+ VTRGQDLSGKDFSGKTLIKQDFKTSI
Sbjct: 61  DSVCKASLIALLSASLFVANPALAFKGGGPYGSEVTRGQDLSGKDFSGKTLIKQDFKTSI 120

Query: 148 LRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNT 207
           LRQANF+GA LLGASFFDADLTGADLSDADLRG DFSLANVTKANLSNA LEGALATGNT
Sbjct: 121 LRQANFRGAKLLGASFFDADLTGADLSDADLRGVDFSLANVTKANLSNALLEGALATGNT 180

Query: 208 SFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           SF+GS I GADFTDVPLREDQREYLC++ADGVNPTTGN TRETLLC+
Sbjct: 181 SFKGSNITGADFTDVPLREDQREYLCRIADGVNPTTGNPTRETLLCN 223

BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|743780541|ref|XP_011033364.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X2 [Populus euphratica])

HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79
Identity = 167/222 (75.23%), Postives = 179/222 (80.63%), Query Frame = 1

Query: 27  EMALLNASLCCSTPKIPSRSHL-LLPPSISL-HSTSQVFN-----QQLQATRNFVLSLGQ 86
           EMALLN SLC    KIP + HL L  PS+S+ H  S  F+     Q L   +  V    +
Sbjct: 16  EMALLNVSLCT---KIPPKPHLSLTKPSLSIPHLPSLSFSHCDKPQALIPNKQLVEDFAK 75

Query: 87  PTFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQAN 146
             FLA +S S F  DPALAFKGGGPYG+ VTRGQDL+GKDFSG+TLIKQDFKTSILRQAN
Sbjct: 76  TGFLAILSVSLFFTDPALAFKGGGPYGSEVTRGQDLTGKDFSGRTLIKQDFKTSILRQAN 135

Query: 147 FKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 206
           FKGA LLGASFFDADLTGADLSDADLR ADFSLANVTKANLSNANLEGALATGNTSFRGS
Sbjct: 136 FKGAKLLGASFFDADLTGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGS 195

Query: 207 TINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
            I GADFTDVPLREDQREYLCK ADGVNPTTGNATR+TLLC+
Sbjct: 196 NITGADFTDVPLREDQREYLCKFADGVNPTTGNATRDTLLCN 234

BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|743780532|ref|XP_011033251.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica])

HSP 1 Score: 302.4 bits (773), Expect = 7.2e-79
Identity = 165/225 (73.33%), Postives = 177/225 (78.67%), Query Frame = 1

Query: 27  EMALLNASLCCSTPKIPSRSHL-LLPPSISL---------HSTSQVFNQQLQATRNFVLS 86
           EMALLN SLC    KIP + HL L  PS+S+         H      +Q L   +  V  
Sbjct: 16  EMALLNVSLCT---KIPPKPHLSLTKPSLSIPHLPSLSFSHCDKPQVHQALIPNKQLVED 75

Query: 87  LGQPTFLAFVSASFFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILR 146
             +  FLA +S S F  DPALAFKGGGPYG+ VTRGQDL+GKDFSG+TLIKQDFKTSILR
Sbjct: 76  FAKTGFLAILSVSLFFTDPALAFKGGGPYGSEVTRGQDLTGKDFSGRTLIKQDFKTSILR 135

Query: 147 QANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 206
           QANFKGA LLGASFFDADLTGADLSDADLR ADFSLANVTKANLSNANLEGALATGNTSF
Sbjct: 136 QANFKGAKLLGASFFDADLTGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSF 195

Query: 207 RGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           RGS I GADFTDVPLREDQREYLCK ADGVNPTTGNATR+TLLC+
Sbjct: 196 RGSNITGADFTDVPLREDQREYLCKFADGVNPTTGNATRDTLLCN 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TL15A_ARATH9.2e-7469.64Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2... [more]
RFR32_CYAA51.3e-1443.65Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32... [more]
TL203_ARATH1.2e-0933.33Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.... [more]
FIP2_ARATH6.7e-0838.74FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1[more]
Y1819_SYNY35.7e-0737.93Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... [more]
Match NameE-valueIdentityDescription
A0A0A0KA71_CUCSA7.0e-11399.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008700 PE=4 SV=1[more]
M5XKK0_PRUPE6.6e-7972.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011122mg PE=4 SV=1[more]
A0A059BHI1_EUCGR1.1e-7874.43Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02956 PE=4 SV=1[more]
K4CA08_SOLLC1.1e-7874.43Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
D7TLP9_VITVI3.3e-7875.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02090 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G44920.25.2e-7569.64 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G12250.16.9e-1133.33 Pentapeptide repeat-containing protein[more]
AT5G55000.23.8e-0938.74 potassium channel tetramerisation domain-containing protein / pentap... [more]
Match NameE-valueIdentityDescription
gi|449441422|ref|XP_004138481.1|1.0e-11299.53PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus][more]
gi|659081552|ref|XP_008441390.1|1.1e-10694.91PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo][more]
gi|645255790|ref|XP_008233656.1|5.6e-7972.69PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Prunus mume][more]
gi|743780541|ref|XP_011033364.1|5.6e-7975.23PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X2 [Po... [more]
gi|743780532|ref|XP_011033251.1|7.2e-7973.33PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Po... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
IPR0016465peptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0015979 photosynthesis
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0009409 response to cold
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G01200.1CSPI06G01200.1mRNA
CSPI06G01200.2CSPI06G01200.2mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 125..163
score: 7.8
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 37..233
score: 2.2
NoneNo IPR availableunknownSSF141571Pentapeptide repeat-likecoord: 102..204
score: 5.36

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G01200Wild cucumber (PI 183967)cpicpiB134
CSPI06G01200Wild cucumber (PI 183967)cpicpiB179
CSPI06G01200Cucumber (Gy14) v1cgycpiB261
CSPI06G01200Cucumber (Gy14) v1cgycpiB282
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB274
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB314
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB690
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB783
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB784
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB861
CSPI06G01200Cucurbita maxima (Rimu)cmacpiB892
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB264
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB305
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB682
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB773
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB776
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB843
CSPI06G01200Cucurbita moschata (Rifu)cmocpiB872
CSPI06G01200Cucumber (Chinese Long) v2cpicuB291
CSPI06G01200Melon (DHL92) v3.5.1cpimeB482
CSPI06G01200Watermelon (Charleston Gray)cpiwcgB443
CSPI06G01200Watermelon (Charleston Gray)cpiwcgB491
CSPI06G01200Watermelon (Charleston Gray)cpiwcgB514
CSPI06G01200Watermelon (97103) v1cpiwmB464
CSPI06G01200Watermelon (97103) v1cpiwmB527
CSPI06G01200Cucurbita pepo (Zucchini)cpecpiB082
CSPI06G01200Cucurbita pepo (Zucchini)cpecpiB199
CSPI06G01200Cucurbita pepo (Zucchini)cpecpiB466
CSPI06G01200Cucurbita pepo (Zucchini)cpecpiB469
CSPI06G01200Cucurbita pepo (Zucchini)cpecpiB634
CSPI06G01200Bottle gourd (USVL1VR-Ls)cpilsiB449
CSPI06G01200Bottle gourd (USVL1VR-Ls)cpilsiB459
CSPI06G01200Melon (DHL92) v3.6.1cpimedB470
CSPI06G01200Cucumber (Gy14) v2cgybcpiB148
CSPI06G01200Cucumber (Gy14) v2cgybcpiB241
CSPI06G01200Silver-seed gourdcarcpiB0103
CSPI06G01200Silver-seed gourdcarcpiB0186
CSPI06G01200Silver-seed gourdcarcpiB0301
CSPI06G01200Silver-seed gourdcarcpiB0619
CSPI06G01200Silver-seed gourdcarcpiB0709
CSPI06G01200Silver-seed gourdcarcpiB1040
CSPI06G01200Cucumber (Chinese Long) v3cpicucB343
CSPI06G01200Cucumber (Chinese Long) v3cpicucB356
CSPI06G01200Watermelon (97103) v2cpiwmbB439
CSPI06G01200Watermelon (97103) v2cpiwmbB506