CSPI06G01200 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCCTTTTCCAGATTATCCAATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTAACCTCCCCTTCTCCCTTCCCACTCCCATTTTCTTCTCCTTTATCTTCCAATGCTTTCATTTTACCCACTATATGAAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTCATTTCCTCATTTTCATTCTCATTTCTCTATTGTATTCTACTCTACTGTATGGTTGATTTTTGGCTATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGGTTTCAACCGAAGTTTCATTATTTCTATTGTTTCTACTTGTACTACAGTAATATGTGGTTGTGACATTGCTCTTATTTTTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATAATTCAGGATTTTCTATCCAGTTAATGCCGACTTCTATTGTTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTACAATTAAATGCTTCTTTGTTTAATCTTTAGTTTGCTCCTTTTCAGATTTTCAAATTTGAATGATTGTATTATTATATACATAACAAGTTAGTTAGGACTGGAGGTCAAATTTTGCAATCTCAGTCTTGAATGTTAAAAAATTTGCTCAATTACGATAGGAAACTACTTAGCAAAAAGTATTCATGTGATACAACAACCACGAACTTTGTATGCAGTTTGAGATGCAGAGTAACCTACAGTTTTTATCTGCGGTTTTACATGCAAGCGCTGTGCTTTGATGTTAGAATACAGTGAAGTTGTAACTTTATACTGAATGGTTGTTTTTTTCTGCTTTGAGCAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGGTATGGAAACCCAACATCTATTTTGCTTTTAGTATCTCATCGGGGATCCTCTTTTTTTTTTTTATCCGTTTACTCTCTCCCCCCACGTTCAATTAATACTTTATATATTTTCCAAAGGTACTCTATACATATTTGAAAGCTTCTATTAGTTCCTTATAAGACCTAAAAGTCGAGTTTAGGAGATTTGAAAGGCGAGAATGGCCAAGATTGATCTTAGATACACAAATAGAATCTGATTCTCTTTTTCATAGTATATTTCTTGTAAACCCAACATTTATGTGCTTTTAGTATCTCATTGGGGATTCTCTCATATCCATAATTATTTTAGATGCCATGAGGCATTAACATAGGTTATTATTCCAACCTCTCTATGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCTGAAACTCATTTTTGTCAGCAATGTTCTTAGACGAAAGAGTAATAGGAAAATGCAATTCAACTAACAATGGATATAATTTTCTGAAAACTAACAATGGATATAATTTTCTGAAAACTAACAATGGGGTGGTTGTACGAAGAAATACTTGTGCATAATTTACCTCATAATGGCAGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAAACAAATTCTTGTGTTTCTTAGGTTTGACTGTAAATGGTTCATGATAAATAGAACAGGAAACTTATTCATTTTTGTTTACAGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGAGACTCAAATTAGATGGCAAGCTATTGAACTACAAGAATCGTACAGATCAACTTAAAAATGTATAAAGTTTTCAATAACAATATCAGTATATTCAATCCAATGAGTTCAATTTTGTCATTC ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTCTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 9.2e-74 Identity = 156/224 (69.64%), Postives = 170/224 (75.89%), Query Frame = 1
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14 Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09 Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: FIP2_ARATH (FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08 Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 1
BLAST of CSPI06G01200 vs. Swiss-Prot
Match: Y1819_SYNY3 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1819 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07 Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1
BLAST of CSPI06G01200 vs. TrEMBL
Match: A0A0A0KA71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008700 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 7.0e-113 Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1
BLAST of CSPI06G01200 vs. TrEMBL
Match: M5XKK0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011122mg PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 6.6e-79 Identity = 164/227 (72.25%), Postives = 182/227 (80.18%), Query Frame = 1
BLAST of CSPI06G01200 vs. TrEMBL
Match: A0A059BHI1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02956 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78 Identity = 163/219 (74.43%), Postives = 178/219 (81.28%), Query Frame = 1
BLAST of CSPI06G01200 vs. TrEMBL
Match: K4CA08_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78 Identity = 163/219 (74.43%), Postives = 181/219 (82.65%), Query Frame = 1
BLAST of CSPI06G01200 vs. TrEMBL
Match: D7TLP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02090 PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78 Identity = 167/221 (75.57%), Postives = 178/221 (80.54%), Query Frame = 1
BLAST of CSPI06G01200 vs. TAIR10
Match: AT2G44920.2 (AT2G44920.2 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 278.1 bits (710), Expect = 5.2e-75 Identity = 156/224 (69.64%), Postives = 170/224 (75.89%), Query Frame = 1
BLAST of CSPI06G01200 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein) HSP 1 Score: 65.1 bits (157), Expect = 6.9e-11 Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
BLAST of CSPI06G01200 vs. TAIR10
Match: AT5G55000.2 (AT5G55000.2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein) HSP 1 Score: 59.3 bits (142), Expect = 3.8e-09 Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 1
BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|449441422|ref|XP_004138481.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus]) HSP 1 Score: 414.8 bits (1065), Expect = 1.0e-112 Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1
BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|659081552|ref|XP_008441390.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo]) HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106 Identity = 205/216 (94.91%), Postives = 208/216 (96.30%), Query Frame = 1
BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|645255790|ref|XP_008233656.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Prunus mume]) HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79 Identity = 165/227 (72.69%), Postives = 182/227 (80.18%), Query Frame = 1
BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|743780541|ref|XP_011033364.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X2 [Populus euphratica]) HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79 Identity = 167/222 (75.23%), Postives = 179/222 (80.63%), Query Frame = 1
BLAST of CSPI06G01200 vs. NCBI nr
Match: gi|743780532|ref|XP_011033251.1| (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]) HSP 1 Score: 302.4 bits (773), Expect = 7.2e-79 Identity = 165/225 (73.33%), Postives = 177/225 (78.67%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |