Carg05742 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05742
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc-finger homeodomain protein
Location	Cucurbita_argyrosperma_scaffold_033 : 742608 .. 743163 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTAAGAGACCATCAAACCGTTCATTATTCCCTTAGACCCAGACGAGATCACCCTCCTCCGAACCCAGATCCGGCGGCGCCACCCCCTGCGCCGTCGTCTCCGGTTCGCTACCGTGAATGTTTGAGGAACTACGCCGTGAAGAGCGGCGGGCACGTGCTCGATGGGTGCGGAGAGTTCATGCCCAGTGGGGAAGATGGTACTCCTGATGGGTTCAAGTGCGCCGCCTGCGAATGTCACCGGAGTTTCCACCGGAGAGTTGTGGAGGTGGTGGATAACGGCCGGATTAAGGTCGTGAGTTACGGTATGTTTAATTATTATTATATATTGAGATCTAATAATGGAAAGGCAAATTATGTTTTATTTAACTATAATACAAGGTAAGAGGACAGAGAGGCGGAGTTTCGGTGGTCCGGTGATGATGGCGTTCGGCGGTTCGGCGGAAGGCCCGGCGGAGTCGTCAAGCGACGGCGGAGAAGCGTCGAGGAAGGCAAAGAAGCGGGTGAGGACGCAGTTCAGCGTAGAAGAGAAGGGTAAAATGATGAGGCACTAG

mRNA sequence

ATGGAATTAAGAGACCATCAAACCGTTCATTATTCCCTTAGACCCAGACGAGATCACCCTCCTCCGAACCCAGATCCGGCGGCGCCACCCCCTGCGCCGTCGTCTCCGGTTCGCTACCGTGAATGTTTGAGGAACTACGCCGTGAAGAGCGGCGGGCACGTGCTCGATGGGTGCGGAGAGTTCATGCCCAGTGGGGAAGATGGTACTCCTGATGGGTTCAAGTGCGCCGCCTGCGAATGTCACCGGAGTTTCCACCGGAGAGTTGTGGAGGTGGTGGATAACGGCCGGATTAAGGTCGTGAGTTACGGTAAGAGGACAGAGAGGCGGAGTTTCGGTGGTCCGGTGATGATGGCGTTCGGCGGTTCGGCGGAAGGCCCGGCGGAGTCGTCAAGCGACGGCGGAGAAGCGTCGAGGAAGGCAAAGAAGCGGGTGAGGACGCAGTTCAGCGTAGAAGAGAAGGGTAAAATGATGAGGCACTAG

Coding sequence (CDS)

ATGGAATTAAGAGACCATCAAACCGTTCATTATTCCCTTAGACCCAGACGAGATCACCCTCCTCCGAACCCAGATCCGGCGGCGCCACCCCCTGCGCCGTCGTCTCCGGTTCGCTACCGTGAATGTTTGAGGAACTACGCCGTGAAGAGCGGCGGGCACGTGCTCGATGGGTGCGGAGAGTTCATGCCCAGTGGGGAAGATGGTACTCCTGATGGGTTCAAGTGCGCCGCCTGCGAATGTCACCGGAGTTTCCACCGGAGAGTTGTGGAGGTGGTGGATAACGGCCGGATTAAGGTCGTGAGTTACGGTAAGAGGACAGAGAGGCGGAGTTTCGGTGGTCCGGTGATGATGGCGTTCGGCGGTTCGGCGGAAGGCCCGGCGGAGTCGTCAAGCGACGGCGGAGAAGCGTCGAGGAAGGCAAAGAAGCGGGTGAGGACGCAGTTCAGCGTAGAAGAGAAGGGTAAAATGATGAGGCACTAG

Protein sequence

MELRDHQTVHYSLRPRRDHPPPNPDPAAPPPAPSSPVRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRIKVVSYGKRTERRSFGGPVMMAFGGSAEGPAESSSDGGEASRKAKKRVRTQFSVEEKGKMMRH

Homology

[Close]

BLAST of Carg05742 vs. NCBI nr
Match: XP_022929279.1 (zinc-finger homeodomain protein 6-like [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 8.1e-75
Identity = 154/159 (96.86%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MELRDHQTVHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60
           MEL DHQTVHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE
Sbjct: 1   MELGDHQTVHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60

Query: 61  FMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRIKVVSYGKRTERRSFGGPVMMAFG 120
           FMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRIKVVSYGKRTERRSF GPVMMAFG
Sbjct: 61  FMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRIKVVSYGKRTERRSFAGPVMMAFG 120

Query: 121 GSAEGPAESSSDGGEASRKAKKRVRTQFSVEEKGKMMRH 160
           GSAEGPAESSSDGGEAS KAKKRVRTQFS+EEKGKMM H
Sbjct: 121 GSAEGPAESSSDGGEASGKAKKRVRTQFSLEEKGKMMSH 159

[Close]

BLAST of Carg05742 vs. NCBI nr
Match: XP_022985130.1 (zinc-finger homeodomain protein 6-like [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 3.4e-73
Identity = 153/161 (95.03%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MELRDHQTVHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60
           ME RDHQT HYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE
Sbjct: 1   MEFRDHQTAHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60

Query: 61  FMPSGEDGTPDGFKCAACECHRSFHRRVVEVVD--NGRIKVVSYGKRTERRSFGGPVMMA 120
           FMPSG+DGTPDGFKCAACECHRSFHRRVVEVVD  NGRIKVVSYGKRTERRSF GPVMMA
Sbjct: 61  FMPSGDDGTPDGFKCAACECHRSFHRRVVEVVDVANGRIKVVSYGKRTERRSFAGPVMMA 120

Query: 121 FGGSAEGPAESSSDGGEASRKAKKRVRTQFSVEEKGKMMRH 160
           FGGSAEGPAESSSDGGEAS KAKKRVRTQFSVEEKGKMM H
Sbjct: 121 FGGSAEGPAESSSDGGEASGKAKKRVRTQFSVEEKGKMMSH 161

[Close]

BLAST of Carg05742 vs. NCBI nr
Match: XP_023552881.1 (zinc-finger homeodomain protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 147/178 (82.58%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MELRDHQTVHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60
           MELRDHQT HYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE
Sbjct: 1   MELRDHQTAHYSLRPRRDHPPPXXXXXXXXXXXXSPVRYRECLRNYAVKSGGHVLDGCGE 60

Query: 61  FMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRIKVVSYG----------------- 120
           FMPSGEDGT DGFKCAACECHRSFHRRVVEVVDNGRIKVVSYG                 
Sbjct: 61  FMPSGEDGTADGFKCAACECHRSFHRRVVEVVDNGRIKVVSYGMFNXXXXXXXXXXXXXX 120

Query: 121 --KRTERRSFGGPVMMAFGGSAEGPAESSSDGGEASRKAKKRVRTQFSVEEKGKMMRH 160
                    F GPVMMAFGGSAEGPAESSSDGGEAS KAKKRVRTQF VEEKGKMMRH
Sbjct: 121 XXXXXXXXXFAGPVMMAFGGSAEGPAESSSDGGEASGKAKKRVRTQFIVEEKGKMMRH 178

[Close]

BLAST of Carg05742 vs. NCBI nr
Match: XP_004146554.2 (PREDICTED: zinc-finger homeodomain protein 6-like [Cucumis sativus] >KGN53304.1 hypothetical protein Csa_4G046670 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 35  SPVRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE---V 94
           +P+RY +CL+N+AVK+GGHVLDGCGEFMPSGEDGTPD FKCAACECHRSFHRRV+E   +
Sbjct: 50  TPLRYSQCLKNHAVKTGGHVLDGCGEFMPSGEDGTPDSFKCAACECHRSFHRRVLEEEDI 109

Query: 95  VDNGRIKVV---------------SYGKRTERRSFGGPVMMAFGGSAEGPAESSSDGG-E 154
            +N R+ ++               +  K+   R+   P+MM FGGS E PAESSSDGG E
Sbjct: 110 TNNTRLHILTSAPPQYNTQFSNGNNNNKQYPGRTRVAPMMMTFGGSTEAPAESSSDGGAE 169

Query: 155 ASRKAKKRVRTQFSVEEKGKMM 158
           AS K KKR RT+FS E+KGKMM
Sbjct: 170 ASGKQKKRCRTKFSGEQKGKMM 191

[Close]

BLAST of Carg05742 vs. NCBI nr
Match: PPS17850.1 (hypothetical protein GOBAR_AA02720 [Gossypium barbadense])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 72/148 (48.65%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGR 96
           +RY+ECL+N+A   GGHV+DGCGEFMPSGE+GTP+  KCAACECHRSFHR+ +    NG 
Sbjct: 115 IRYKECLKNHAASMGGHVVDGCGEFMPSGEEGTPEALKCAACECHRSFHRKEI----NGE 174

Query: 97  IKVVSYGKRT-----ERRSFG----------GPVMMAFGGSAEGPAESS---------SD 156
              V   +R      +R S G           P+MM+FGG   GPAESS         S+
Sbjct: 175 SNAVRPPRRATPLHHQRFSLGLSASPPAMSVAPLMMSFGGG--GPAESSSEDLHVFHFSE 234

Query: 157 GGEA---SRKAKKRVRTQFSVEEKGKMM 158
           GG+       +KKR RT+FS E+K KMM
Sbjct: 235 GGQQPSHPHSSKKRFRTKFSQEQKKKMM 256

[Close]

BLAST of Carg05742 vs. TAIR10
Match: AT2G18350.1 (homeobox protein 24)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 38  RYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRI 97
           RYREC +N+A  SGGHV+DGCGEFM SGE+GT +   CAAC+CHRSFHR+ ++ +     
Sbjct: 81  RYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEIDGLFVVNF 140

Query: 98  KVVSYGKRTERRSFGGPVMMAFGGSAEGPAESSSDGGEASRKA--------------KKR 157
               + +R        P+MM+FGG     AESS++      ++              KKR
Sbjct: 141 NSFGHSQRPLGSRHVSPIMMSFGGXXXCAAESSTEDLNKFHQSFSGYGVDQFHHYQPKKR 200

[Close]

BLAST of Carg05742 vs. TAIR10
Match: AT4G24660.1 (homeobox protein 22)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGR 96
           +RYRECL+N+AV  GGH +DGC EFMPSGEDGT D  KCAAC CHR+FHR+  E +    
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRA 106

Query: 97  IKVVSYGKR-TERRSFGGPVMMAFGGSAEGP-----AESSSDGGEASRKAKKRVRTQFSV 156
            +V +Y  R  +     G + +    +   P                    KR RT+F+ 
Sbjct: 107 HRVPTYYNRPPQPHQPPGYLHLTSPAAPYRPXXXXXXXXXXXXXXXXXXXXKRFRTKFTA 166

Query: 157 EEKGKMM 158
           E+K KM+
Sbjct: 167 EQKEKML 173

[Close]

BLAST of Carg05742 vs. TAIR10
Match: AT1G75240.1 (homeobox protein 33)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVV 93
           VRYRECL+N+A   GG V DGCGEFMPSGE+GT +  +CAAC+CHR+FHR+ ++ V
Sbjct: 74  VRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMDGV 129

[Close]

BLAST of Carg05742 vs. TAIR10
Match: AT5G65410.1 (homeobox protein 25)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 38  RYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRR 88
           R+RECL+N AV  GGH +DGCGEFMP+G +GT D  KCAAC CHR+FHR+
Sbjct: 74  RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRK 123

[Close]

BLAST of Carg05742 vs. TAIR10
Match: AT1G14440.1 (homeobox protein 31)

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-17
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE 91
           ++Y+ECL+N+A   GG+  DGCGEFMPSGEDG+ +   C+AC CHR+FHR+ VE
Sbjct: 88  IKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVE 141

[Close]

BLAST of Carg05742 vs. Swiss-Prot
Match: sp|Q9ZPW7|ZHD6_ARATH (Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZHD6 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-22
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 38  RYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGRI 97
           RYREC +N+A  SGGHV+DGCGEFM SGE+GT +   CAAC+CHRSFHR+ ++ +     
Sbjct: 81  RYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEIDGLFVVNF 140

Query: 98  KVVSYGKRTERRSFGGPVMMAFGGSAEGPAESSSDGGEASRKA--------------KKR 157
               + +R        P+MM+FGG     AESS++      ++              KKR
Sbjct: 141 NSFGHSQRPLGSRHVSPIMMSFGGXXXCAAESSTEDLNKFHQSFSGYGVDQFHHYQPKKR 200

[Close]

BLAST of Carg05742 vs. Swiss-Prot
Match: sp|Q9SB61|ZHD2_ARATH (Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZHD1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.1e-18
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGR 96
           +RYRECL+N+AV  GGH +DGC EFMPSGEDGT D  KCAAC CHR+FHR+  E +    
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRA 106

Query: 97  IKVVSYGKR-TERRSFGGPVMMAFGGSAEGP-----AESSSDGGEASRKAKKRVRTQFSV 156
            +V +Y  R  +     G + +    +   P                    KR RT+F+ 
Sbjct: 107 HRVPTYYNRPPQPHQPPGYLHLTSPAAPYRPXXXXXXXXXXXXXXXXXXXXKRFRTKFTA 166

Query: 157 EEKGKMM 158
           E+K KM+
Sbjct: 167 EQKEKML 173

[Close]

BLAST of Carg05742 vs. Swiss-Prot
Match: sp|Q9FRL5|ZHD5_ARATH (Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZHD5 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVV 93
           VRYRECL+N+A   GG V DGCGEFMPSGE+GT +  +CAAC+CHR+FHR+ ++ V
Sbjct: 74  VRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMDGV 129

[Close]

BLAST of Carg05742 vs. Swiss-Prot
Match: sp|A2Z259|ZHD1_ORYSI (Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ZHD1 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 38  RYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE 91
           RYRECL+N+AV  GGH +DGCGEFM +GE+GT D  +CAAC CHR+FHR+  E
Sbjct: 56  RYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESE 108

[Close]

BLAST of Carg05742 vs. Swiss-Prot
Match: sp|Q6YXH5|ZHD1_ORYSJ (Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZHD1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 38  RYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE 91
           RYRECL+N+AV  GGH +DGCGEFM +GE+GT D  +CAAC CHR+FHR+  E
Sbjct: 56  RYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESE 108

[Close]

BLAST of Carg05742 vs. TrEMBL
Match: tr|A0A0A0KWP2|A0A0A0KWP2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046670 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.6e-37
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 35  SPVRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE---V 94
           +P+RY +CL+N+AVK+GGHVLDGCGEFMPSGEDGTPD FKCAACECHRSFHRRV+E   +
Sbjct: 50  TPLRYSQCLKNHAVKTGGHVLDGCGEFMPSGEDGTPDSFKCAACECHRSFHRRVLEEEDI 109

Query: 95  VDNGRIKVV---------------SYGKRTERRSFGGPVMMAFGGSAEGPAESSSDGG-E 154
            +N R+ ++               +  K+   R+   P+MM FGGS E PAESSSDGG E
Sbjct: 110 TNNTRLHILTSAPPQYNTQFSNGNNNNKQYPGRTRVAPMMMTFGGSTEAPAESSSDGGAE 169

Query: 155 ASRKAKKRVRTQFSVEEKGKMM 158
           AS K KKR RT+FS E+KGKMM
Sbjct: 170 ASGKQKKRCRTKFSGEQKGKMM 191

[Close]

BLAST of Carg05742 vs. TrEMBL
Match: tr|A0A2P5YQH9|A0A2P5YQH9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02720 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25
Identity = 72/148 (48.65%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 37  VRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEVVDNGR 96
           +RY+ECL+N+A   GGHV+DGCGEFMPSGE+GTP+  KCAACECHRSFHR+ +    NG 
Sbjct: 115 IRYKECLKNHAASMGGHVVDGCGEFMPSGEEGTPEALKCAACECHRSFHRKEI----NGE 174

Query: 97  IKVVSYGKRT-----ERRSFG----------GPVMMAFGGSAEGPAESS---------SD 156
              V   +R      +R S G           P+MM+FGG   GPAESS         S+
Sbjct: 175 SNAVRPPRRATPLHHQRFSLGLSASPPAMSVAPLMMSFGGG--GPAESSSEDLHVFHFSE 234

Query: 157 GGEA---SRKAKKRVRTQFSVEEKGKMM 158
           GG+       +KKR RT+FS E+K KMM
Sbjct: 235 GGQQPSHPHSSKKRFRTKFSQEQKKKMM 256

[Close]

BLAST of Carg05742 vs. TrEMBL
Match: tr|A0A1S3BSZ9|A0A1S3BSZ9_CUCME (zinc-finger homeodomain protein 6-like OS=Cucumis melo OX=3656 GN=LOC103493196 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 35  SPVRYRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVV 90
           +PVRY +CL+N+AVK+GGHVLDGCGEFMPSGEDGTPD FKCAACECHRSFHRRV+
Sbjct: 47  TPVRYSQCLKNHAVKTGGHVLDGCGEFMPSGEDGTPDSFKCAACECHRSFHRRVL 101

[Close]

BLAST of Carg05742 vs. TrEMBL
Match: tr|A0A1S2YYQ9|A0A1S2YYQ9_CICAR (zinc-finger homeodomain protein 6-like OS=Cicer arietinum OX=3827 GN=LOC101503911 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.0e-22
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 39  YRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVEV--VDNGR 98
           YRECL+N+A   G HV+DGCGEFMPSGE+GTP+ FKCAAC+CHR+FHR+ V+   V N  
Sbjct: 95  YRECLKNHAASMGSHVVDGCGEFMPSGEEGTPESFKCAACDCHRNFHRKHVQQQHVPNPN 154

Query: 99  IKV----------VSYGKRTERRSFG--GPVMMAFGGSAEGPAE-----SSSDGGEASRK 158
             +           S+   T   S G   P+MM FGG+AE  +E       + G + S +
Sbjct: 155 YHLNFPTPSSSNRFSHVLTTPTNSSGQVQPLMMTFGGAAESSSEDLNMFQCNAGAQFSLQ 214

[Close]

BLAST of Carg05742 vs. TrEMBL
Match: tr|A0A161ZN87|A0A161ZN87_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025947 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 74/174 (42.53%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 35  SPVR--YRECLRNYAVKSGGHVLDGCGEFMPSGEDGTPDGFKCAACECHRSFHRRVVE-- 94
           SPVR  YRECL+N+A   GGHV+DGCGEFMPSGE+GTP+ FKCAACECHR+FHRR  E  
Sbjct: 92  SPVRCQYRECLKNHAASIGGHVVDGCGEFMPSGEEGTPEAFKCAACECHRNFHRREAEGG 151

Query: 95  ----------------------VVDNGRIKVVSYGKRTERRSF-----------GGPVMM 154
                                  + N   +      R + R F            GPVMM
Sbjct: 152 ESRQFATPNVYYPHNPNGININSLRNANHQSQILPTRHQHRHFPNHFSHSLASPTGPVMM 211

Query: 155 AFGGSAEGPAESSSD---------GGE------ASRKAKKRVRTQFSVEEKGKM 157
           AFGG   GP ESSS+         GG+      +   +KKR RT+F+ E+K +M
Sbjct: 212 AFGG--RGPEESSSEDLNMFQSPGGGQHMGLPSSYSGSKKRFRTKFTKEQKDRM 263

The following BLAST results are available for this feature:

BLAST of Carg05742 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929279.1	8.1e-75	96.86	zinc-finger homeodomain protein 6-like [Cucurbita moschata]	[more]
XP_022985130.1	3.4e-73	95.03	zinc-finger homeodomain protein 6-like [Cucurbita maxima]	[more]
XP_023552881.1	2.4e-66	82.58	zinc-finger homeodomain protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_004146554.2	1.1e-36	59.86	PREDICTED: zinc-finger homeodomain protein 6-like [Cucumis sativus] >KGN53304.1 ...	[more]
PPS17850.1	1.0e-24	48.65	hypothetical protein GOBAR_AA02720 [Gossypium barbadense]	[more]

BLAST of Carg05742 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18350.1	1.8e-23	42.54	homeobox protein 24	[more]
AT4G24660.1	4.5e-19	40.94	homeobox protein 22	[more]
AT1G75240.1	1.7e-18	64.29	homeobox protein 33	[more]
AT5G65410.1	2.5e-17	68.00	homeobox protein 25	[more]
AT1G14440.1	3.2e-17	59.26	homeobox protein 31	[more]

BLAST of Carg05742 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZPW7\|ZHD6_ARATH	3.2e-22	42.54	Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZHD6 PE=1 S...	[more]
sp\|Q9SB61\|ZHD2_ARATH	8.1e-18	40.94	Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZHD1 PE=1 S...	[more]
sp\|Q9FRL5\|ZHD5_ARATH	3.1e-17	64.29	Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZHD5 PE=1 S...	[more]
sp\|A2Z259\|ZHD1_ORYSI	1.2e-16	66.04	Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ZHD1...	[more]
sp\|Q6YXH5\|ZHD1_ORYSJ	1.2e-16	66.04	Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZH...	[more]

BLAST of Carg05742 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWP2\|A0A0A0KWP2_CUCSA	7.6e-37	59.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046670 PE=4 SV=1	[more]
tr\|A0A2P5YQH9\|A0A2P5YQH9_GOSBA	6.7e-25	48.65	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02720 PE=4 SV...	[more]
tr\|A0A1S3BSZ9\|A0A1S3BSZ9_CUCME	1.8e-22	85.45	zinc-finger homeodomain protein 6-like OS=Cucumis melo OX=3656 GN=LOC103493196 P...	[more]
tr\|A0A1S2YYQ9\|A0A1S2YYQ9_CICAR	9.0e-22	47.18	zinc-finger homeodomain protein 6-like OS=Cicer arietinum OX=3827 GN=LOC10150391...	[more]
tr\|A0A161ZN87\|A0A161ZN87_DAUCA	1.2e-21	42.53	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025947 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006456	ZF_HD_homeobox_Cys/His_dimer

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05742-RA	Carg05742-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAM	TIGR01566	TIGR01566	coord: 38..87 e-value: 1.2E-26 score: 90.9
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 37..89 e-value: 1.0E-28 score: 99.3
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PRODOM	PD125774		coord: 37..90 e-value: 1.0E-17 score: 217.0
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROSITE	PS51523	ZF_HD_DIMER	coord: 39..88 score: 24.695
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..159
None	No IPR available	PANTHER	PTHR31948	FAMILY NOT NAMED	coord: 23..158

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05742	Cla014583	Watermelon (97103) v1	carwmB1018
Carg05742	Csa4G046670	Cucumber (Chinese Long) v2	carcuB1033
Carg05742	MELO3C016389	Melon (DHL92) v3.5.1	carmeB0992
Carg05742	ClCG07G008540	Watermelon (Charleston Gray)	carwcgB0999
Carg05742	CSPI04G05450	Wild cucumber (PI 183967)	carcpiB1057
Carg05742	Cucsa.106510	Cucumber (Gy14) v1	carcgyB1133
Carg05742	CmaCh16G006210	Cucurbita maxima (Rimu)	carcmaB1409
Carg05742	CmoCh16G006760	Cucurbita moschata (Rifu)	carcmoB1366
Carg05742	Lsi07G002550	Bottle gourd (USVL1VR-Ls)	carlsiB935
Carg05742	Cp4.1LG14g01930	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05742	CsGy4G005340	Cucumber (Gy14) v2	carcgybB1005
Carg05742	MELO3C016389.2	Melon (DHL92) v3.6.1	carmedB1004
Carg05742	CsaV3_4G005600	Cucumber (Chinese Long) v3	carcucB1063
Carg05742	Cla97C07G135570	Watermelon (97103) v2	carwmbB1084
Carg05742	Bhi01G001829	Wax gourd	carwgoB1194

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05742	Carg00640	Silver-seed gourd	carcarB432

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05742	Silver-seed gourd	carcarB646
Carg05742	Cucumber (Gy14) v2	carcgybB1006
Carg05742	Cucurbita maxima (Rimu)	carcmaB1413
Carg05742	Cucurbita maxima (Rimu)	carcmaB1414
Carg05742	Cucurbita moschata (Rifu)	carcmoB1370
Carg05742	Cucurbita moschata (Rifu)	carcmoB1371
Carg05742	Cucurbita pepo (Zucchini)	carcpeB1412
Carg05742	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05742	Cucurbita pepo (Zucchini)	carcpeB1418
Carg05742	Cucurbita pepo (Zucchini)	carcpeB1419
Carg05742	Wild cucumber (PI 183967)	carcpiB1058
Carg05742	Cucumber (Chinese Long) v2	carcuB1034
Carg05742	Cucumber (Chinese Long) v3	carcucB1068
Carg05742	Bottle gourd (USVL1VR-Ls)	carlsiB930
Carg05742	Melon (DHL92) v3.5.1	carmeB0994
Carg05742	Melon (DHL92) v3.6.1	carmedB1006
Carg05742	Watermelon (Charleston Gray)	carwcgB0993
Carg05742	Watermelon (97103) v1	carwmB1021
Carg05742	Watermelon (97103) v2	carwmbB1072
Carg05742	Wax gourd	carwgoB1193