Carg05711 (gene) Silver-seed gourd

Overview
NameCarg05711
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSKP1-like protein
LocationCucurbita_argyrosperma_scaffold_033 : 573539 .. 575116 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAACCGTCTGTCAGTTAGGGTTTCTCCATCCTCCCAATCGGAATCAACCCTTCAAAAATCCCTTAATCCTTACCACAATGTCTTCATCCAAGATGATCGTACTCAGGAGTTCTGATGGCGAAATTTTTCACATGGACGAAGCGGTGGCTCTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTCGCTAAGGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTCGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGTGAGTTCTCTGTTATTCCTCTGTTTTTATCTCTTTCTTTCGCTGGTTATAACATAATTTGGGGCTTTTTGATCATTTGTGACATGTGAATTCAAGGCTTTATTGCGGAATTCTTTAATATCTCTGTTATTGTTGACTGTTATGTTCTTGTATTCAACATGTACAAATTGACTATATATCATGAATTGTCTTCTGTTTTGATTATAATACGAAATTTAGTTAGTATGCGAACTTGCTTCCTTGTATAATATAAGCATGGAATTGCAGATTACTGTTAATTAGTCGATCATGATTCTTTAGAATGGCATATTTCGCTGTTTATTTTAGTATGATTCATGTCCAAATGTGCCTTTCCAGTGATAATCTTGAATTCACTTATAAATTCACTTATAGTGGCTTTGAAATTGGAAGATTACAAGGGTGAAAAGTGGTGTTAGCCCATTATTTTCCTCTAAATTCAGGAAGTTCATAACTCTTCTAGAGCAGGAGATTGTTGTCGCAGAGGAGGAGATTTTGGATGATAAAAGTCTTCCTAATTTAGGGAATGATCATGTCTTTATAAACAAAGAATACTCTCTCCATTAGTATGAGGCATTTTGGAGAAGCCCAAACAAAGCCACGAGAGTTTAATCTCAAAGTGGACAATATCATACCATTATGGAGAGAGTCGCCGACGTGATATCAATTTGGTTATTGACATTCAAATAGGTTGTCCTTGTTGATATCAATTTGGTCATTGACATGCAAATGGGTTGTCGTTGTTAGATATCAATTTGGTCATTGACATTCAAATGGGTTGTCCTGGTTGATATCAATTTGGTTATTAACGTTCAAATGGTTCTTGTTATCTGTGTTGGGGCTTAGGCATCACAAGATGTTTTAAATTACATGGTTTCTGTGTATATGGGTTTGCTTGTTCTTTTGTGGTGATGGATAACAATGGATGTGTACCCACCAAGCAGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGAACATTCATTCATTTCATAGCCTCCTTCAATAGGATAGCCATTGATCTTAGTTAGTAGGTTTTTTTATTT

mRNA sequence

TCCAACCGTCTGTCAGTTAGGGTTTCTCCATCCTCCCAATCGGAATCAACCCTTCAAAAATCCCTTAATCCTTACCACAATGTCTTCATCCAAGATGATCGTACTCAGGAGTTCTGATGGCGAAATTTTTCACATGGACGAAGCGGTGGCTCTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTCGCTAAGGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTCGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGAACATTCATTCATTTCATAGCCTCCTTCAATAGGATAGCCATTGATCTTAGTTAGTAGGTTTTTTTATTT

Coding sequence (CDS)

ATGTCTTCATCCAAGATGATCGTACTCAGGAGTTCTGATGGCGAAATTTTTCACATGGACGAAGCGGTGGCTCTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTCGCTAAGGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTCGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGA

Protein sequence

MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Homology
[Close]
BLAST of Carg05711 vs. NCBI nr
Match: XP_022928279.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK+IVLRSSDGE FH+DEAVALESQTIK+MIEDDCADTVIPVPNVTGSILA+VIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. NCBI nr
Match: XP_023529806.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK+I+LRSSDGE FH+DEAVALESQTIKHMIEDDCADTVIPVPNVTGSILA VIEYC
Sbjct: 1   MSSSKVILLRSSDGETFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAMVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. NCBI nr
Match: XP_004144851.1 (PREDICTED: SKP1-like protein 1B [Cucumis sativus] >KGN43257.1 hypothetical protein Csa_7G012950 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 5.9e-70
Identity = 138/155 (89.03%), Postives = 145/155 (93.55%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT +IL+KVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.2e-69
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDC DTVIP+PNVT +IL+KV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 269.2 bits (687), Expect = 8.5e-69
Identity = 135/155 (87.10%), Postives = 145/155 (93.55%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK IVL+SSDGE F ++EAVA+ESQTIKHMIEDDCAD VIP+PNV  +ILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETD KDSKA+DD+LK WDAE+VKVDQN LFDLILAANYL+IK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. TAIR10
Match: AT1G75950.1 (S phase kinase-associated protein 1)

HSP 1 Score: 235.0 bits (598), Expect = 3.2e-62
Identity = 119/159 (74.84%), Postives = 136/159 (85.53%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           S+K IVL+SSDGE F ++EAVALESQTI HM+EDDC D  +P+PNVT  ILAKVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDAKDSKAL------DDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTV 122
           HVE  A  ++A+      DD LKAWDA+F+K+DQ  LF+LILAANYL+IK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Carg05711 vs. TAIR10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 224.6 bits (571), Expect = 4.3e-59
Identity = 119/171 (69.59%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MS+ + I L+SSDGE F +DEAVALESQTIKHMIEDDC D  IP+PNVT  IL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVET----------------DAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLD 120
           K+HVE                            LK WD+EF+KVDQ  LFDLILAANYL+
Sbjct: 61  KRHVEAAEXXXXXXXXXXXXXXXXXXXXXXXXDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Carg05711 vs. TAIR10
Match: AT1G20140.1 (SKP1-like 4)

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-56
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           + KMI+L+SSDGE F ++EAVA++SQTIKHMIEDDCAD  IP+PNVTG+ILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDA-----KD--SKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A     KD    A +D LK WD+EFVKVDQ  LFDLILAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]
BLAST of Carg05711 vs. TAIR10
Match: AT2G25700.1 (SKP1-like 3)

HSP 1 Score: 203.8 bits (517), Expect = 7.9e-53
Identity = 104/160 (65.00%), Postives = 124/160 (77.50%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           + KMI+L+SSDGE F ++EAVA+ESQTIKHMIEDDC D  IP+PNVTG+ILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDAKDSKALD-------DTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A+     D         LK WD +FVKVD   LFDL+ AANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]
BLAST of Carg05711 vs. TAIR10
Match: AT4G34210.1 (SKP1-like 11)

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-52
Identity = 103/153 (67.32%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           SSKMIVL SSDG+ F ++EAVA++SQTI HM+EDDC    IP+ NV   IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMIKG 122
           H   +A  +   ++ L  WD +F+ ++Q+ +F+LILAANYL+IKSLLDLTCQTVADMIKG
Sbjct: 62  HHVDEA--NPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of Carg05711 vs. Swiss-Prot
Match: sp|Q39255|SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-61
Identity = 119/159 (74.84%), Postives = 136/159 (85.53%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           S+K IVL+SSDGE F ++EAVALESQTI HM+EDDC D  +P+PNVT  ILAKVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDAKDSKAL------DDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTV 122
           HVE  A  ++A+      DD LKAWDA+F+K+DQ  LF+LILAANYL+IK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Carg05711 vs. Swiss-Prot
Match: sp|Q9FHW7|SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.8e-58
Identity = 119/171 (69.59%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MS+ + I L+SSDGE F +DEAVALESQTIKHMIEDDC D  IP+PNVT  IL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVET----------------DAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLD 120
           K+HVE                            LK WD+EF+KVDQ  LFDLILAANYL+
Sbjct: 61  KRHVEAAEXXXXXXXXXXXXXXXXXXXXXXXXDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Carg05711 vs. Swiss-Prot
Match: sp|Q6PL11|SKP1_ORYSJ (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-56
Identity = 115/166 (69.28%), Postives = 126/166 (75.90%), Query Frame = 0 

Query: 5   KMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKKHV 64
           KMI L+SSDGE F ++EAVA+ESQTI+HMIEDDCAD  IP+PNV   IL+KVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ET---------------DAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLL 124
                                     + LK WDA+FVKVDQ  LFDLILAANYL+IK LL
Sbjct: 68  HAXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]
BLAST of Carg05711 vs. Swiss-Prot
Match: sp|Q9LNT9|ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.2e-55
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           + KMI+L+SSDGE F ++EAVA++SQTIKHMIEDDCAD  IP+PNVTG+ILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDA-----KD--SKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A     KD    A +D LK WD+EFVKVDQ  LFDLILAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]
BLAST of Carg05711 vs. Swiss-Prot
Match: sp|Q9SL93|ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 104/160 (65.00%), Postives = 124/160 (77.50%), Query Frame = 0 

Query: 3   SSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCKK 62
           + KMI+L+SSDGE F ++EAVA+ESQTIKHMIEDDC D  IP+PNVTG+ILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDAKDSKALD-------DTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A+     D         LK WD +FVKVD   LFDL+ AANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]
BLAST of Carg05711 vs. TrEMBL
Match: tr|A0A0A0K4P4|A0A0A0K4P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.9e-70
Identity = 138/155 (89.03%), Postives = 145/155 (93.55%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT +IL+KVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. TrEMBL
Match: tr|A0A1S3BI15|A0A1S3BI15_CUCME (SKP1-like protein 1B OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.5e-69
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDC DTVIP+PNVT +IL+KV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. TrEMBL
Match: tr|A0A1S2YZ15|A0A1S2YZ15_CICAR (SKP1-like protein 1A OS=Cicer arietinum OX=3827 GN=LOC101511190 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.9e-65
Identity = 130/155 (83.87%), Postives = 139/155 (89.68%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSS+K I L+SSDGE F +DEAVALESQTIKHMIEDDCAD+ IP+PNVT  ILAKVIEYC
Sbjct: 1   MSSTKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVE  + D K  +D LKAWDA+FVKVDQ  LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVEAASSDDKPTEDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of Carg05711 vs. TrEMBL
Match: tr|A0A2J6M5Q8|A0A2J6M5Q8_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X71740 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.4e-64
Identity = 130/154 (84.42%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 2   SSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYCK 61
           SSSK+IVL+SSDGE F ++EAVALESQTIKHMIEDDCADT IP+PNVT  IL+KVIEYCK
Sbjct: 3   SSSKVIVLKSSDGETFEVEEAVALESQTIKHMIEDDCADTSIPLPNVTSKILSKVIEYCK 62

Query: 62  KHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMIK 121
           KHVET   D KA +D LK++DAEFVKVDQ  LFDLILAANYL+IKSLLDLTCQTVADMIK
Sbjct: 63  KHVETPKTDDKAAEDDLKSFDAEFVKVDQGTLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRREN WAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENAWAFE 156

[Close]
BLAST of Carg05711 vs. TrEMBL
Match: tr|A0A218W6U2|A0A218W6U2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004711 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.4e-64
Identity = 127/155 (81.94%), Postives = 139/155 (89.68%), Query Frame = 0 

Query: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60
           MSS + I L+SSDGE F +DEAVA+ESQTIKHMIEDDCAD  IP+PNVT  ILAKVIEYC
Sbjct: 1   MSSPRKITLKSSDGETFEVDEAVAVESQTIKHMIEDDCADNAIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVE+ + + +A DD LK+WDA+FVKVDQ  LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVESSSSEDRANDDELKSWDADFVKVDQAALFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

The following BLAST results are available for this feature:
BLAST of Carg05711 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928279.11.4e-7696.77SKP1-like protein 1A [Cucurbita moschata][more]
XP_023529806.11.4e-7696.77SKP1-like protein 1A [Cucurbita pepo subsp. pepo][more]
XP_004144851.15.9e-7089.03PREDICTED: SKP1-like protein 1B [Cucumis sativus] >KGN43257.1 hypothetical prote... [more]
XP_008447950.12.2e-6987.74PREDICTED: SKP1-like protein 1B [Cucumis melo][more]
XP_022135870.18.5e-6987.10SKP1-like protein 1B [Momordica charantia][more]
BLAST of Carg05711 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75950.13.2e-6274.84S phase kinase-associated protein 1[more]
AT5G42190.14.3e-5969.59E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein[more]
AT1G20140.13.4e-5670.00SKP1-like 4[more]
AT2G25700.17.9e-5365.00SKP1-like 3[more]
AT4G34210.13.0e-5267.32SKP1-like 11[more]
BLAST of Carg05711 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q39255|SKP1A_ARATH5.8e-6174.84SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1[more]
sp|Q9FHW7|SKP1B_ARATH7.8e-5869.59SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1[more]
sp|Q6PL11|SKP1_ORYSJ4.3e-5669.28SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1[more]
sp|Q9LNT9|ASK4_ARATH6.2e-5570.00SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1[more]
sp|Q9SL93|ASK3_ARATH1.4e-5165.00SKP1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1[more]
BLAST of Carg05711 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4P4|A0A0A0K4P4_CUCSA3.9e-7089.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1[more]
tr|A0A1S3BI15|A0A1S3BI15_CUCME1.5e-6987.74SKP1-like protein 1B OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1[more]
tr|A0A1S2YZ15|A0A1S2YZ15_CICAR4.9e-6583.87SKP1-like protein 1A OS=Cicer arietinum OX=3827 GN=LOC101511190 PE=3 SV=1[more]
tr|A0A2J6M5Q8|A0A2J6M5Q8_LACSA1.4e-6484.42Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X71740 PE=3 SV=1[more]
tr|A0A218W6U2|A0A218W6U2_PUNGR2.4e-6481.94Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004711 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036296SKP1-like_dim_sf
IPR011333SKP1/BTB/POZ_sf
IPR016073Skp1_comp_POZ
IPR016897SKP1
IPR016072Skp1_comp_dimer
IPR001232SKP1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05711-RACarg05711-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 4..105
e-value: 1.6E-52
score: 190.5
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 106..153
e-value: 9.3E-31
score: 105.6
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..155
e-value: 1.4E-67
score: 224.6
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 5..64
e-value: 1.6E-27
score: 95.4
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 2..155
e-value: 4.9E-76
score: 256.0
NoneNo IPR availablePANTHERPTHR11165:SF88SUBFAMILY NOT NAMEDcoord: 1..155
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 1..155
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILYSSF54695POZ domaincoord: 5..67
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILYSSF81382Skp1 dimerisation domain-likecoord: 78..153

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05711Cla015822Watermelon (97103) v1carwmB1025
Carg05711Csa7G012950Cucumber (Chinese Long) v2carcuB1035
Carg05711MELO3C013349Melon (DHL92) v3.5.1carmeB0988
Carg05711ClCG02G004050Watermelon (Charleston Gray)carwcgB0997
Carg05711CSPI07G01030Wild cucumber (PI 183967)carcpiB1059
Carg05711Cucsa.370480Cucumber (Gy14) v1carcgyB1141
Carg05711CmoCh11G017450Cucurbita moschata (Rifu)carcmoB1365
Carg05711Lsi11G012050Bottle gourd (USVL1VR-Ls)carlsiB928
Carg05711Cp4.1LG04g04850Cucurbita pepo (Zucchini)carcpeB1421
Carg05711CsGy7G000850Cucumber (Gy14) v2carcgybB1007
Carg05711MELO3C013349.2Melon (DHL92) v3.6.1carmedB0998
Carg05711Cla97C02G030870Watermelon (97103) v2carwmbB1081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05711Wild cucumber (PI 183967)carcpiB1051
Carg05711Cucumber (Chinese Long) v2carcuB1027
Carg05711Cucumber (Chinese Long) v3carcucB1057
Carg05711Cucumber (Chinese Long) v3carcucB1069
Carg05711Bottle gourd (USVL1VR-Ls)carlsiB927
Carg05711Melon (DHL92) v3.5.1carmeB0986
Carg05711Melon (DHL92) v3.6.1carmedB0996
Carg05711Watermelon (Charleston Gray)carwcgB0995
Carg05711Watermelon (97103) v1carwmB1023
Carg05711Watermelon (97103) v2carwmbB1079
Carg05711Wax gourdcarwgoB1195
Carg05711Wax gourdcarwgoB1196
Carg05711Silver-seed gourdcarcarB342
Carg05711Silver-seed gourdcarcarB343
Carg05711Silver-seed gourdcarcarB377
Carg05711Cucumber (Gy14) v2carcgybB0999
Carg05711Cucumber (Gy14) v1carcgyB1135
Carg05711Cucurbita maxima (Rimu)carcmaB1408
Carg05711Cucurbita maxima (Rimu)carcmaB1411
Carg05711Cucurbita maxima (Rimu)carcmaB1412
Carg05711Cucurbita moschata (Rifu)carcmoB1368
Carg05711Cucurbita moschata (Rifu)carcmoB1369
Carg05711Cucurbita pepo (Zucchini)carcpeB1415
Carg05711Cucurbita pepo (Zucchini)carcpeB1416