Carg05670 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05670
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_033 : 256116 .. 257051 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCTTCGCTGCAACCAAATCGAAGAAGAAGTTCTTTCCGTGTTTCCGATCGACGGCTTCCAACGGCCCTGTCAGGACGGTGCGAGGTGTGGATGCTGCAGACGAACAGGTTTTTCCGTTCATGGCGGTGGAAGAGAGGAACGGTATGATGCTTCACAATGTACAGCCGTTTGATGGATGCGGCAACGTTTCTGGTCGCCAGAAAAAGGGAGGCGGCGGTGGTGCTTTGTCGCGTGCGCTTAAGGCCGTCTTATTCGGAACTTCATTGGTTTGTCCGCTGATTCTGACAGCTTTTGAAATGAAACGCTAATTTCGTTCTCTGTTTTTCTTTTTCTATGGTTGACATTTTTCGATTAATCGATTGATTTTCCTAACGCGGATATCGGATGTTCTTTGAGTGTTGCAGGCGAAGAAGATCAGAAAAAGGAAACGAAAACAAAAGGAAAATTCGAATGAGGAGAATCAGAGACGTCAACTTCTGTCTTCAATTAGCAGCAGATCATCAGATCCAAATTTCCGCAACTCTTCTACCTGTTCTTCGCGCACTTCTGCGCCATTTTCATCCGCCTCATTCTCCAGTTCGTCTCCTACCTCCCCGGAAATCAACGAAATATCATTTCGATTTCATCCAACTGCCTCGAATCGCTTGTTCAGGCAGATTAATCTCAGAAAAACCTCCCGCTGTTGGTTTGTTCTATTGGTAGGTCTTCTAAGCTTGGTTTTATGGGAAAAAATCGGAGCTACTGTGTGCACTTCGATTTGGATCCTCTGTTTCCATTTTTACCGCCGTGAAATCGGATTCAGGTCGCCGGACGACAAGGCCAGTGCGGCGGCCATGAGTTCCGACGAATACAAGAAGAGAACCATCCTGGAAGGATTTCTGAACAGAGATCGTTCGGCTGTTCGTAGTTCAATCACACACATTGATTGA

mRNA sequence

ATGGACTCCTTCGCTGCAACCAAATCGAAGAAGAAGTTCTTTCCGTGTTTCCGATCGACGGCTTCCAACGGCCCTGTCAGGACGGTGCGAGGTGTGGATGCTGCAGACGAACAGGTTTTTCCGTTCATGGCGGTGGAAGAGAGGAACGGTATGATGCTTCACAATGTACAGCCGTTTGATGGATGCGGCAACGTTTCTGGTCGCCAGAAAAAGGGAGGCGGCGGTGGTGCTTTGTCGCGTGCGCTTAAGGCCGTCTTATTCGGAACTTCATTGGCGAAGAAGATCAGAAAAAGGAAACGAAAACAAAAGGAAAATTCGAATGAGGAGAATCAGAGACGTCAACTTCTGTCTTCAATTAGCAGCAGATCATCAGATCCAAATTTCCGCAACTCTTCTACCTGTTCTTCGCGCACTTCTGCGCCATTTTCATCCGCCTCATTCTCCAGTTCGTCTCCTACCTCCCCGGAAATCAACGAAATATCATTTCGATTTCATCCAACTGCCTCGAATCGCTTGTTCAGGCAGATTAATCTCAGAAAAACCTCCCGCTGTTGGTTTGTTCTATTGGTAGGTCTTCTAAGCTTGGTTTTATGGGAAAAAATCGGAGCTACTGTGTGCACTTCGATTTGGATCCTCTGTTTCCATTTTTACCGCCGTGAAATCGGATTCAGGTCGCCGGACGACAAGGCCAGTGCGGCGGCCATGAGTTCCGACGAATACAAGAAGAGAACCATCCTGGAAGGATTTCTGAACAGAGATCGTTCGGCTGTTCGTAGTTCAATCACACACATTGATTGA

Coding sequence (CDS)

ATGGACTCCTTCGCTGCAACCAAATCGAAGAAGAAGTTCTTTCCGTGTTTCCGATCGACGGCTTCCAACGGCCCTGTCAGGACGGTGCGAGGTGTGGATGCTGCAGACGAACAGGTTTTTCCGTTCATGGCGGTGGAAGAGAGGAACGGTATGATGCTTCACAATGTACAGCCGTTTGATGGATGCGGCAACGTTTCTGGTCGCCAGAAAAAGGGAGGCGGCGGTGGTGCTTTGTCGCGTGCGCTTAAGGCCGTCTTATTCGGAACTTCATTGGCGAAGAAGATCAGAAAAAGGAAACGAAAACAAAAGGAAAATTCGAATGAGGAGAATCAGAGACGTCAACTTCTGTCTTCAATTAGCAGCAGATCATCAGATCCAAATTTCCGCAACTCTTCTACCTGTTCTTCGCGCACTTCTGCGCCATTTTCATCCGCCTCATTCTCCAGTTCGTCTCCTACCTCCCCGGAAATCAACGAAATATCATTTCGATTTCATCCAACTGCCTCGAATCGCTTGTTCAGGCAGATTAATCTCAGAAAAACCTCCCGCTGTTGGTTTGTTCTATTGGTAGGTCTTCTAAGCTTGGTTTTATGGGAAAAAATCGGAGCTACTGTGTGCACTTCGATTTGGATCCTCTGTTTCCATTTTTACCGCCGTGAAATCGGATTCAGGTCGCCGGACGACAAGGCCAGTGCGGCGGCCATGAGTTCCGACGAATACAAGAAGAGAACCATCCTGGAAGGATTTCTGAACAGAGATCGTTCGGCTGTTCGTAGTTCAATCACACACATTGATTGA

Protein sequence

MDSFAATKSKKKFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFDGCGNVSGRQKKGGGGGALSRALKAVLFGTSLAKKIRKRKRKQKENSNEENQRRQLLSSISSRSSDPNFRNSSTCSSRTSAPFSSASFSSSSPTSPEINEISFRFHPTASNRLFRQINLRKTSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEYKKRTILEGFLNRDRSAVRSSITHID

Homology

[Close]

BLAST of Carg05670 vs. NCBI nr
Match: XP_023525890.1 (uncharacterized protein LOC111789371 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95
Identity = 225/265 (84.91%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MDSFAATKSKKKFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD 60
           MDSFAA KSKKKFFPCFRSTAS+GPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD
Sbjct: 1   MDSFAANKSKKKFFPCFRSTASSGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD 60

Query: 61  GCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GCGNVSGRQK XXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  GCGNVSGRQKKXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFRFHPTASNRLFRQINLRK 180
           XXXXX                                   SFRFHPTASNRLFRQINLRK
Sbjct: 121 XXXXXPNFRNYSTCSSRISAPFSSASFCSSSPTSPEINEISFRFHPTASNRLFRQINLRK 180

Query: 181 TSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240
           TSRCWFVLLVGLLSL+LWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY
Sbjct: 181 TSRCWFVLLVGLLSLILWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240

Query: 241 KKRTILEGFLNRDRSAVRSSITHID 266
           KKRTILEGFLNRDRSAVR+SITHID
Sbjct: 241 KKRTILEGFLNRDRSAVRNSITHID 265

[Close]

BLAST of Carg05670 vs. NCBI nr
Match: XP_022981581.1 (uncharacterized protein LOC111480657 isoform X1 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 7.9e-91
Identity = 225/265 (84.91%), Postives = 230/265 (86.79%), Query Frame = 0


Query: 1   MDSFAATKSKKKFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD 60
           MDSFAATKSKKKFFPCFRSTAS+ PVRTVRG+DAADEQVFPFMAVEERNGMMLHNVQPFD
Sbjct: 1   MDSFAATKSKKKFFPCFRSTASSSPVRTVRGMDAADEQVFPFMAVEERNGMMLHNVQPFD 60

Query: 61  GCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GCG+VSGRQKXXXXXX LSRALKAVLFGTSLAK XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  GCGDVSGRQKXXXXXXXLSRALKAVLFGTSLAKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFRFHPTASNRLFRQINLRK 180
                                XXXXXXXXXX         SFRFHPTASNRLFRQINLR 
Sbjct: 121 SRSSDPNFRNSSTCSSRISAPXXXXXXXXXXPTSSEINEISFRFHPTASNRLFRQINLRN 180

Query: 181 TSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240
           TSRCWFVLLV LLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY
Sbjct: 181 TSRCWFVLLVCLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240

Query: 241 KKRTILEGFLNRDRSAVRSSITHID 266
           +KRTILEGFLNRDRSAVR+SITHID
Sbjct: 241 RKRTILEGFLNRDRSAVRNSITHID 265

[Close]

BLAST of Carg05670 vs. NCBI nr
Match: XP_022941268.1 (uncharacterized protein LOC111446618 isoform X1 [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 232/265 (87.55%), Postives = 236/265 (89.06%), Query Frame = 0


Query: 1   MDSFAATKSKKKFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD 60
           MDSFAATKSKKKFFPCFRSTAS+GPVRTVRG++AADEQVFPFMAVEERNGMMLHNVQPFD
Sbjct: 1   MDSFAATKSKKKFFPCFRSTASSGPVRTVRGMNAADEQVFPFMAVEERNGMMLHNVQPFD 60

Query: 61  GCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GCGNVSGRQ XXXXXX                  XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  GCGNVSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFRFHPTASNRLFRQINLRK 180
           XXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX    SFRFHPTASNRLFRQINLRK
Sbjct: 121 XXXXDPNFRNXXXXXXXXXXXXXXXXXXXXXXXXXXIKEISFRFHPTASNRLFRQINLRK 180

Query: 181 TSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240
           TSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY
Sbjct: 181 TSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSDEY 240

Query: 241 KKRTILEGFLNRDRSAVRSSITHID 266
           KKRTILEGFLNRDRSAVR+SITHID
Sbjct: 241 KKRTILEGFLNRDRSAVRNSITHID 265

[Close]

BLAST of Carg05670 vs. NCBI nr
Match: XP_022981582.1 (uncharacterized protein LOC111480657 isoform X2 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 153/190 (80.53%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 1   MDSFAATKSKKKFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQPFD 60
           MDSFAATKSKKKFFPCFRSTAS+ PVRTVRG+DAADEQVFPFMAVEERNGMMLHNVQPFD
Sbjct: 1   MDSFAATKSKKKFFPCFRSTASSSPVRTVRGMDAADEQVFPFMAVEERNGMMLHNVQPFD 60

Query: 61  GCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GCG+VSGRQKXXXXXX LSRALKAVLFGTSLAK XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  GCGDVSGRQKXXXXXXXLSRALKAVLFGTSLAKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFRFHPTASNRLFRQINLRK 180
                                XXXXXXXXXX         SFRFHPTASNRLFRQINLR 
Sbjct: 121 SRSSDPNFRNSSTCSSRISAPXXXXXXXXXXPTSSEINEISFRFHPTASNRLFRQINLRN 180

Query: 181 TSRCWFVLLV 191
           TSRCWFVLLV
Sbjct: 181 TSRCWFVLLV 190

[Close]

BLAST of Carg05670 vs. NCBI nr
Match: XP_023535127.1 (uncharacterized protein LOC111796643 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 3.1e-39
Identity = 115/267 (43.07%), Postives = 131/267 (49.06%), Query Frame = 0


Query: 1   MDSFAATKSKK--KFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQP 60
           M+S   TKSKK  K FPCFR+ AS  PV    G  A +EQVFPFM   +       NV P
Sbjct: 1   MESIVVTKSKKRNKLFPCFRAAASGSPV----GHGAPEEQVFPFMTARD-------NVLP 60

Query: 61  FDGCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKKXXXXXXXXXXXXXXXXXXXXXXXX 120
            D     S R K      A SRA++AV+FGTSLAKK                        
Sbjct: 61  VDRGDEDSSRWKKKGGRGAWSRAVRAVIFGTSLAKK-IGKRKAKQYQNSKESQRHLAPPW 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFRFHPTASNRLFRQINL 180
                                                     SFR +PTASNRL+ QI++
Sbjct: 121 FSSRSRSGSDLNYRNYSTRSPEPFSSSSFYSSSPSSTEKSDASFRLYPTASNRLYTQIDI 180

Query: 181 RKTSRCWFVLLVGLLSLVLWEKIGATVCTSIWILCFHFYRREIGFRSPDDKASAAAMSSD 240
           RK    WFVLLV LLSLVLW K GA +CTS+W+LC   YR   GFRSPDDKAS AAMSSD
Sbjct: 181 RKIFSGWFVLLVCLLSLVLWGKTGAIICTSVWLLC--LYRWRFGFRSPDDKASTAAMSSD 240

Query: 241 EYKKRTILEGFLNRDRSAVRSSITHID 266
           EY    I+E FL RDR A R+S   ID
Sbjct: 241 EYNDIEIMEEFLKRDRLAARNSTLRID 253

[Close]

BLAST of Carg05670 vs. TrEMBL
Match: tr|A0A0A0LIJ9|A0A0A0LIJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851180 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 50/96 (52.08%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MDSFAATKSKK--KFFPCFRSTASNGPVRTVRGVDAADEQVFPFMAVEERNGMMLHNVQP 60
          MD+ A  K KK  K FPCFRS AS G    VR  D + E VFPF+ V+E       NV+P
Sbjct: 1  MDAIATPKLKKKNKLFPCFRSAASGGGHVKVRSKDGS-EDVFPFITVDE-------NVRP 60

Query: 61 FDGCGNVSGRQKXXXXXXALSRALKAVLFGTSLAKK 95
            G    SG +K      A SRALKAVLFGTSLAKK
Sbjct: 61 LYGGDGDSGHRKKKGSAGAFSRALKAVLFGTSLAKK 88

[Close]

BLAST of Carg05670 vs. TrEMBL
Match: tr|A0A164U5V0|A0A164U5V0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025546 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.8e-05
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 187 VLLVGLLSLVLWEKIGATVCTSIWILCFH-FYRREIGFRSPDDKASAAAMSSDEYKKRTI 246
           ++ + LL LV+W KI A +CTS W+L     +++    +   D+     + S+EYKKR I
Sbjct: 192 LIALSLLVLVVWGKICAILCTSTWLLLLSASFKKRGAVKKSSDQLGREDVDSEEYKKRVI 251

Query: 247 LEGFLNRDRSAVRSS 261
           +EG L+R+R  + SS
Sbjct: 252 MEGLLDRNRGGISSS 266

The following BLAST results are available for this feature:

BLAST of Carg05670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525890.1	5.3e-95	84.91	uncharacterized protein LOC111789371 [Cucurbita pepo subsp. pepo]	[more]
XP_022981581.1	7.9e-91	84.91	uncharacterized protein LOC111480657 isoform X1 [Cucurbita maxima]	[more]
XP_022941268.1	1.3e-82	87.55	uncharacterized protein LOC111446618 isoform X1 [Cucurbita moschata]	[more]
XP_022981582.1	1.8e-47	80.53	uncharacterized protein LOC111480657 isoform X2 [Cucurbita maxima]	[more]
XP_023535127.1	3.1e-39	43.07	uncharacterized protein LOC111796643 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIJ9\|A0A0A0LIJ9_CUCSA	9.1e-11	52.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851180 PE=4 SV=1	[more]
tr\|A0A164U5V0\|A0A164U5V0_DAUCA	9.8e-05	37.33	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025546 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05670-RA	Carg05670-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..154
None	No IPR available	PANTHER	PTHR34379	FAMILY NOT NAMED	coord: 6..255

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05670	Cla023433	Watermelon (97103) v1	carwmB1026
Carg05670	Csa3G851180	Cucumber (Chinese Long) v2	carcuB1028
Carg05670	MELO3C018181	Melon (DHL92) v3.5.1	carmeB0990
Carg05670	ClCG11G018580	Watermelon (Charleston Gray)	carwcgB0992
Carg05670	CSPI03G41860	Wild cucumber (PI 183967)	carcpiB1052
Carg05670	CmaCh09G009010	Cucurbita maxima (Rimu)	carcmaB1407
Carg05670	CmaCh01G011770	Cucurbita maxima (Rimu)	carcmaB1410
Carg05670	CmoCh09G008910	Cucurbita moschata (Rifu)	carcmoB1364
Carg05670	CmoCh01G012300	Cucurbita moschata (Rifu)	carcmoB1367
Carg05670	Lsi04G012740	Bottle gourd (USVL1VR-Ls)	carlsiB933
Carg05670	Cp4.1LG06g07350	Cucurbita pepo (Zucchini)	carcpeB1422
Carg05670	Cp4.1LG02g01400	Cucurbita pepo (Zucchini)	carcpeB1420
Carg05670	CsGy3G039270	Cucumber (Gy14) v2	carcgybB1000
Carg05670	MELO3C018181.2	Melon (DHL92) v3.6.1	carmedB1000
Carg05670	CsaV3_3G044290	Cucumber (Chinese Long) v3	carcucB1058
Carg05670	Cla97C11G224690	Watermelon (97103) v2	carwmbB1077
Carg05670	Bhi09G001676	Wax gourd	carwgoB1199

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05670	Carg12772	Silver-seed gourd	carcarB641

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05670	Cucumber (Gy14) v1	carcgyB1139
Carg05670	Watermelon (Charleston Gray)	carwcgB0995