Carg05331 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05331
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SAM_2 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_010 : 1241244 .. 1241708 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

mRNA sequence

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

Coding sequence (CDS)

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

Protein sequence

MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQDIMPQNQDKAFSIQFVGIFQRKGINKFQLVNLTP

Homology

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BLAST of Carg05331 vs. NCBI nr
Match: XP_008462633.1 (PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_022925561.1 (uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 uncharacterized protein LOC111432962 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 99/216 (45.83%), Postives = 115/216 (53.24%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN    HLSGSSNS + LD+HGDDSWVVVKKQ V ILVP  +I  KSS+  AG
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+TCLE  A  LPS SKNVK    +    HCN T+KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQAGALEETCLEAPAVQLPSTSKNVK----QSVAAHCNSTVKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D+A +                                                
Sbjct: 121 AVTP-NPDEACNSRPCKVSGLLNSAKSMKQPTHLHCPGGFLTGSTLLNQRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_011657741.1 (PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus] >XP_011657742.1 PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus] >XP_011657743.1 PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus] >KGN48325.1 hypothetical protein Csa_6G476650 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 94/217 (43.32%), Postives = 112/217 (51.61%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN + +HLSGSSNS++ LDMHGDD WVVVKKQ V ILVP ++I  KS+     
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D  F+                                                
Sbjct: 121 AVTPPNPDNVFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLTGGTLLNLRLRALNLERN 180

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_022132769.1 (uncharacterized protein LOC111005550 [Momordica charantia] >XP_022132770.1 uncharacterized protein LOC111005550 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 101/216 (46.76%), Postives = 114/216 (52.78%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN   SHLSGSSNS++GLD+HGDDSWVVVKKQ V ILVP  +I +KSST  AG
Sbjct: 1   MVKTKQRQNNNPSHLSGSSNSVIGLDLHGDDSWVVVKKQKVTILVPPSSIVRKSSTPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI          +LE+ CLEV AAVLP +SKNVK  + K +P H  LT  EPLKQ
Sbjct: 61  QSQLQPI----------SLEEKCLEVPAAVLPLSSKNVKPRTSKSAPPHHILTSNEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
              PQ+ D+A +                                                
Sbjct: 121 ATRPQSPDEACNSGPSKVLGVVNATKPMLQPRRLHCPDSFLSGGTLLNLRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_023543171.1 (uncharacterized protein LOC111803122 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543172.1 uncharacterized protein LOC111803122 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 98/216 (45.37%), Postives = 114/216 (52.78%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN    HLSGSSNS + LD+HGDDSWVVVKKQ V ILVP  +I  +SS+  AG
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTRSSSPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+G LE+TCLE  A VLPS SKNVK    +    HCN T+KEPLK 
Sbjct: 61  QSQLQPITQKVSNCQAGTLEETCLESPAVVLPSTSKNVK----QSVAAHCNSTVKEPLKL 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D+A +                                                
Sbjct: 121 AVSP-NPDEACNSRPCKVSGLLKSAKSMKQPTHLHCPGVFLTGSTLLNQRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. TrEMBL
Match: tr|A0A1S3CIZ6|A0A1S3CIZ6_CUCME (uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.0e-35
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. TrEMBL
Match: tr|A0A0A0KF34|A0A0A0KF34_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 94/217 (43.32%), Postives = 112/217 (51.61%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN + +HLSGSSNS++ LDMHGDD WVVVKKQ V ILVP ++I  KS+     
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D  F+                                                
Sbjct: 121 AVTPPNPDNVFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLTGGTLLNLRLRALNLERN 180

[Close]

BLAST of Carg05331 vs. TrEMBL
Match: tr|A0A2R6Q483|A0A2R6Q483_ACTCH (Tankyrase-1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23009 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           M K KQR  + +S    S+ S +G +  GDDSWV+VKKQIV IL+P + + ++S+T   G
Sbjct: 1   MAKPKQRPQVAISAKKNSTPSGLGTEPTGDDSWVIVKKQIVRILIPPLPVNKQSTTPDLG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSL 104
            SQLQ   ++    QS    +TCL + +  +P   K+  L  L
Sbjct: 61  TSQLQAKPRKTINAQSEYPMQTCLPIHS--VPEREKSTPLSPL 101

[Close]

BLAST of Carg05331 vs. TrEMBL
Match: tr|A0A2I4GY55|A0A2I4GY55_9ROSI (uncharacterized protein LOC109011901 isoform X5 OS=Juglans regia OX=51240 GN=LOC109011901 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 64/225 (28.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           +V T + +NIT S    SS S   LD+ G+  WV+VKKQ V ILVP +  A+K  T   G
Sbjct: 8   LVATPRNKNITPSGYIDSSKSDNDLDLQGEGGWVIVKKQRVTILVPPLPAAKKLITQKPG 67

Query: 61  QSQLQPIAKEVTKCQSGALEKTC------------------------LEVSAAVLPSASK 120
            SQ Q I ++ T  Q  A    C                         +V A  L + +K
Sbjct: 68  PSQPQAIPRKTTSNQIEAPIDICPRILSVDEREKSIPLAPRKGIQITRKVPAQDLSTLAK 127

Query: 121 NVKLLSL-------------------------------KPSPVHC-------NLTLKEPL 154
            +++ S+                               +P  +HC        + + + L
Sbjct: 128 PLRVDSIMEAGGLSRVDQVGTSKTDKRFGVSDTSKAIKRPRLLHCPSGFFDGGMLVSQRL 187

[Close]

BLAST of Carg05331 vs. TrEMBL
Match: tr|A0A2I4GY39|A0A2I4GY39_9ROSI (uncharacterized protein LOC109011901 isoform X3 OS=Juglans regia OX=51240 GN=LOC109011901 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 64/225 (28.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           +V T + +NIT S    SS S   LD+ G+  WV+VKKQ V ILVP +  A+K  T   G
Sbjct: 29  LVATPRNKNITPSGYIDSSKSDNDLDLQGEGGWVIVKKQRVTILVPPLPAAKKLITQKPG 88

Query: 61  QSQLQPIAKEVTKCQSGALEKTC------------------------LEVSAAVLPSASK 120
            SQ Q I ++ T  Q  A    C                         +V A  L + +K
Sbjct: 89  PSQPQAIPRKTTSNQIEAPIDICPRILSVDEREKSIPLAPRKGIQITRKVPAQDLSTLAK 148

Query: 121 NVKLLSL-------------------------------KPSPVHC-------NLTLKEPL 154
            +++ S+                               +P  +HC        + + + L
Sbjct: 149 PLRVDSIMEAGGLSRVDQVGTSKTDKRFGVSDTSKAIKRPRLLHCPSGFFDGGMLVSQRL 208

The following BLAST results are available for this feature:

BLAST of Carg05331 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462633.1	1.4e-34	60.61	PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo]	[more]
XP_022925561.1	2.6e-33	45.83	uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 unchar...	[more]
XP_011657741.1	7.4e-33	43.32	PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus] >XP_011657742....	[more]
XP_022132769.1	7.4e-33	46.76	uncharacterized protein LOC111005550 [Momordica charantia] >XP_022132770.1 uncha...	[more]
XP_023543171.1	1.7e-32	45.37	uncharacterized protein LOC111803122 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg05331 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05331 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05331 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIZ6\|A0A1S3CIZ6_CUCME	9.0e-35	60.61	uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=...	[more]
tr\|A0A0A0KF34\|A0A0A0KF34_CUCSA	4.9e-33	43.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV=1	[more]
tr\|A0A2R6Q483\|A0A2R6Q483_ACTCH	1.6e-07	38.83	Tankyrase-1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23...	[more]
tr\|A0A2I4GY55\|A0A2I4GY55_9ROSI	1.8e-06	28.44	uncharacterized protein LOC109011901 isoform X5 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4GY39\|A0A2I4GY39_9ROSI	1.8e-06	28.44	uncharacterized protein LOC109011901 isoform X3 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05331-RA	Carg05331-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05331	Cla008406	Watermelon (97103) v1	carwmB0803
Carg05331	Csa6G476650	Cucumber (Chinese Long) v2	carcuB0824
Carg05331	MELO3C024593	Melon (DHL92) v3.5.1	carmeB0805
Carg05331	ClCG01G015070	Watermelon (Charleston Gray)	carwcgB0778
Carg05331	CSPI06G26110	Wild cucumber (PI 183967)	carcpiB0844
Carg05331	Cucsa.083860	Cucumber (Gy14) v1	carcgyB0916
Carg05331	CmaCh07G008200	Cucurbita maxima (Rimu)	carcmaB1130
Carg05331	CmaCh03G011140	Cucurbita maxima (Rimu)	carcmaB1125
Carg05331	CmoCh07G008480	Cucurbita moschata (Rifu)	carcmoB1100
Carg05331	CmoCh03G011040	Cucurbita moschata (Rifu)	carcmoB1095
Carg05331	Lsi01G011780	Bottle gourd (USVL1VR-Ls)	carlsiB742
Carg05331	Cp4.1LG10g03850	Cucurbita pepo (Zucchini)	carcpeB1128
Carg05331	Cp4.1LG19g04820	Cucurbita pepo (Zucchini)	carcpeB1135
Carg05331	CsGy6G025530	Cucumber (Gy14) v2	carcgybB0799
Carg05331	MELO3C024593.2	Melon (DHL92) v3.6.1	carmedB0816
Carg05331	CsaV3_6G041180	Cucumber (Chinese Long) v3	carcucB0850
Carg05331	Cla97C01G014080	Watermelon (97103) v2	carwmbB0839
Carg05331	Bhi03G001367	Wax gourd	carwgoB0945

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05331	Silver-seed gourd	carcarB280
Carg05331	Wild cucumber (PI 183967)	carcpiB0846
Carg05331	Wild cucumber (PI 183967)	carcpiB0847
Carg05331	Cucumber (Chinese Long) v2	carcuB0826