CmoCh07G008480 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G008480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSterile alpha motif domain-containing protein, putative isoform 1
LocationCmo_Chr07 : 4012151 .. 4014410 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACGACGGCGAAGAATTTTGGAAACAAATACAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCATCCAAATCTTCACTTCAGGTTCTTTACCAGATTCATCACACCATCCATTATCCTTGTTACCACATGCCGCCGACCTTCGCTTTCTCTCGAGGAGATCCGATTGCAGGTACGTTACCGCTATTCTTCTTATATTCGGATTTTGTAGAAATTGTTTGCGTCTGAGATGTTGAAATGAAGTTGAAATTTATGATTTCGAGCTTAAATAGCATTCGAAGAAGATCAATCACACTTAGCCGATCTTTAGAATCTTTAGGTCCATAATCAGTTTTGAGTTTTTTGAGCGTGCAATTTTCTTTTCTGTGATTAGACATTGTGTTATTTTGTTGATTTTCTGTGTCAATTTTGTTTTTCAATACAGAAATTAGTCTTGGATAAACGCTATCGCTTGATGTATATAATGTTTGGTATTACCTCGTGAAATACGTAGGTGCAGTTCTGTATGCTGTATTTTCCAAGTGCAGAGGCCGTTTTGGCCTGTGTATATTGTGAGGATTGTTAGCGATAGAGTGCAAATTAGCCTATGACATCTCATTTCGAGGCTACGATTTTTCAAATTTTAGATATCTCCTTGTTAAATGGTTAGAATCTTGGAAGTTCATGCGGATTGTCAAACTTGTAAAGGAATGCAGTGAGTGGAAGAAGTATACAAAATCACACTTGGGAAGGCTGAAGGAGTGAGGAACTGGGGAATCCTAAATGGTCTTTAGGTTTGATACTACAGAATTTGTTCACATCAAAATCAAAAAGTTAATTATTTAGTGTGTAAAGGATTTGTTGTGTGGTAATGCCACAAATGCTCTGATACCACTTGTTGTATCTTAATACCACAACCAAAACGTTCTGATACCTAATGTAGTAGAGACGGAAGCAAGATTGATTGCACTCACACACCCTCAAATAGAAATTAAACAAAGAGACACAAAAATTTACGTGGTTCGGAGAGAAGAAATTCCCCTACATTCACGGGTGGTAGCCAATTACTATAACTAAAGTGTTTACAAGTGTATCTCTCACACTCTCACACTACAAAGTCTCTCTTACCAAATTTCTCCCAATTGCCTCTAGAGAAATACAAAATGACAATGACTTCACACCTCCAAACAATGCTAGACAAGCCTTTATATAGACATAGCAATACTAATTCTCATACATGAACCAAATAAATGAGAATATGAACCAAAAAGGTTTGAACTAAATGAGAGTTATGAACCAAAATAAATAAGAATATGAATCAAAATGGTTATGAACTAAATGAGATTTAAAAACCAAAATAAATGAGAATATGAACCATCAAGAGTTATGAACTAAACCAAGATTTAGAATGGTGGATGGAGATGTACTTTCATCCAATTGTTGGTAATGGATATGTGTTTTAGTGATGTTAGCCAAAACTGTAGAAGGTTAGGTTTTTGAGCATACAAAATAAGAATGTTAGCCTTGACCTTTTTCCAAATTTCCATCTTGATGCATCATCTGAGACTGGAAGTATATCTTGTTGTTTAAACTGGTATTTGAGTTAGGCTACTGCTGAACGTATATCTATGGTTCATGGATAACTTGGTGGTCTTATTGCAGGACAATATTGTGTATCCCATTAGGAAGTAGCTACATTGTGATATATAGTCTTGTTACGTTTTCTGTATAATTTATCTTGTTTCTTCGGATCAACAGCTTCAGTTGCTTATTGTCTATAAACTATGAAATAATCAGTGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

mRNA sequence

ATGAGGACGACGGCGAAGAATTTTGGAAACAAATACAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCATCCAAATCTTCACTTCAGGTTCTTTACCAGATTCATCACACCATCCATTATCCTTGTTACCACATGCCGCCGACCTTCGCTTTCTCTCGAGGAGATCCGATTGCAGGTGCAGTTCTGTATGCTGTATTTTCCAAGTGCAGAGGCCGTTTTGGCCTGTGTATATTGCTACTGCTGAACGTATATCTATGGTTCATGGATAACTTGGTGGTCTTATTGCAGGACAATATTGTCTTCAGTTGCTTATTGTCTATAAACTATGAAATAATCAGTGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

Coding sequence (CDS)

ATGAGGACGACGGCGAAGAATTTTGGAAACAAATACAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCATCCAAATCTTCACTTCAGGTTCTTTACCAGATTCATCACACCATCCATTATCCTTGTTACCACATGCCGCCGACCTTCGCTTTCTCTCGAGGAGATCCGATTGCAGGTGCAGTTCTGTATGCTGTATTTTCCAAGTGCAGAGGCCGTTTTGGCCTGTGTATATTGCTACTGCTGAACGTATATCTATGGTTCATGGATAACTTGGTGGTCTTATTGCAGGACAATATTGTCTTCAGTTGCTTATTGTCTATAAACTATGAAATAATCAGTGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA
BLAST of CmoCh07G008480 vs. TrEMBL
Match: A0A0A0KF34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476650 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 77/132 (58.33%), Postives = 94/132 (71.21%), Query Frame = 1

Query: 119 MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 178
           MVKTKQ+QN + +HLSGSSNS++ LDMHGDD WVVVKKQ V ILVP ++I  KS+     
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 179 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 238
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 239 DIMPQNQDKAFS 251
            + P N D  F+
Sbjct: 121 AVTPPNPDNVFN 132

BLAST of CmoCh07G008480 vs. TrEMBL
Match: A0A0D2RBF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G232900 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 60/162 (37.04%), Postives = 79/162 (48.77%), Query Frame = 1

Query: 119 MVKTKQRQNITLSHLS---------GSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIA 178
           MVK+KQRQ + L H +         G+S     LD+ G+D WVVVKKQ V IL+P +  +
Sbjct: 1   MVKSKQRQ-LGLKHSNKKNARGGRLGTSYPNFELDLLGEDGWVVVKKQRVTILIPPLPSS 60

Query: 179 QKSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCN 238
           +KS  +  G  QLQ   KE             ++ S    P A K   +L  +   V   
Sbjct: 61  KKSKMANQGPGQLQGQKKE------------DVQKSPKSTPLAHKMGSMLLNRRLRVS-- 120

Query: 239 LTLKEPLKQDIMPQNQDKAFSI-QFVGIFQRKGINKFQLVNL 271
             L+  L+Q        K+  + QFV IFQ K INKFQLVNL
Sbjct: 121 -NLERKLQQAGGLTRWLKSLGLGQFVRIFQAKSINKFQLVNL 146

BLAST of CmoCh07G008480 vs. NCBI nr
Match: gi|659125335|ref|XP_008462633.1| (PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 1

Query: 119 MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 178
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 179 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 238
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 239 DIMPQNQDKAFS 251
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

BLAST of CmoCh07G008480 vs. NCBI nr
Match: gi|778717699|ref|XP_011657741.1| (PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 7.5e-32
Identity = 77/132 (58.33%), Postives = 94/132 (71.21%), Query Frame = 1

Query: 119 MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 178
           MVKTKQ+QN + +HLSGSSNS++ LDMHGDD WVVVKKQ V ILVP ++I  KS+     
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 179 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 238
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 239 DIMPQNQDKAFS 251
            + P N D  F+
Sbjct: 121 AVTPPNPDNVFN 132

BLAST of CmoCh07G008480 vs. NCBI nr
Match: gi|1009161395|ref|XP_015898873.1| (PREDICTED: uncharacterized protein LOC107432282 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 47/137 (34.31%), Postives = 64/137 (46.72%), Query Frame = 1

Query: 119 MVKTKQRQNITL--------SHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQ 178
           M KTKQRQ + +        S +  S NS   LD+H +  WV+VKKQ + ILVPS+  A 
Sbjct: 1   MAKTKQRQPVAVTANENNASSGIVDSLNSDTDLDLHVEKGWVIVKKQRITILVPSLPTAD 60

Query: 179 KSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKP------- 238
           +S     G S LQ +   + KC       TC      ++PSA +  K +S  P       
Sbjct: 61  RSPQQNPGPSHLQEMPGNIVKCGLELRTATC-----PIMPSADEQRKSMSSVPKKGVQLA 120

Query: 239 -SPVHCNLTLKEPLKQD 240
            +      TL +P KQD
Sbjct: 121 RNSAQNISTLTKPFKQD 132

BLAST of CmoCh07G008480 vs. NCBI nr
Match: gi|763749061|gb|KJB16500.1| (hypothetical protein B456_002G232900 [Gossypium raimondii])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 60/162 (37.04%), Postives = 79/162 (48.77%), Query Frame = 1

Query: 119 MVKTKQRQNITLSHLS---------GSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIA 178
           MVK+KQRQ + L H +         G+S     LD+ G+D WVVVKKQ V IL+P +  +
Sbjct: 1   MVKSKQRQ-LGLKHSNKKNARGGRLGTSYPNFELDLLGEDGWVVVKKQRVTILIPPLPSS 60

Query: 179 QKSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCN 238
           +KS  +  G  QLQ   KE             ++ S    P A K   +L  +   V   
Sbjct: 61  KKSKMANQGPGQLQGQKKE------------DVQKSPKSTPLAHKMGSMLLNRRLRVS-- 120

Query: 239 LTLKEPLKQDIMPQNQDKAFSI-QFVGIFQRKGINKFQLVNL 271
             L+  L+Q        K+  + QFV IFQ K INKFQLVNL
Sbjct: 121 -NLERKLQQAGGLTRWLKSLGLGQFVRIFQAKSINKFQLVNL 146

BLAST of CmoCh07G008480 vs. NCBI nr
Match: gi|1009173643|ref|XP_015867920.1| (PREDICTED: uncharacterized protein LOC107405395 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 47/137 (34.31%), Postives = 64/137 (46.72%), Query Frame = 1

Query: 119 MVKTKQRQNITL--------SHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQ 178
           M KTKQRQ + +        S +  S NS   LD+H +  WV+VKKQ + ILVPS+  A 
Sbjct: 1   MAKTKQRQPVAVTANENNASSGIVDSLNSDTDLDLHVEKGWVIVKKQRITILVPSLPTAD 60

Query: 179 KSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKP------- 238
           +S     G S LQ +   + KC       TC      ++PSA +  K +S  P       
Sbjct: 61  RSPQQNPGPSHLQEMPGNIVKCGLELRTATC-----PIMPSADEQRKSMSSVPKKGVQLA 120

Query: 239 -SPVHCNLTLKEPLKQD 240
            +      TL +P KQD
Sbjct: 121 RNSSQNISTLTKPFKQD 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KF34_CUCSA5.2e-3258.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476650 PE=4 SV=1[more]
A0A0D2RBF3_GOSRA2.2e-0637.04Uncharacterized protein OS=Gossypium raimondii GN=B456_002G232900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659125335|ref|XP_008462633.1|1.2e-3460.61PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo][more]
gi|778717699|ref|XP_011657741.1|7.5e-3258.33PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus][more]
gi|1009161395|ref|XP_015898873.1|3.2e-0634.31PREDICTED: uncharacterized protein LOC107432282 [Ziziphus jujuba][more]
gi|763749061|gb|KJB16500.1|3.2e-0637.04hypothetical protein B456_002G232900 [Gossypium raimondii][more]
gi|1009173643|ref|XP_015867920.1|5.4e-0634.31PREDICTED: uncharacterized protein LOC107405395 [Ziziphus jujuba][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008480.1CmoCh07G008480.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G008480CmoCh03G011040Cucurbita moschata (Rifu)cmocmoB455
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008480Silver-seed gourdcarcmoB0338
CmoCh07G008480Wax gourdcmowgoB1066
CmoCh07G008480Wild cucumber (PI 183967)cmocpiB873
CmoCh07G008480Wild cucumber (PI 183967)cmocpiB874
CmoCh07G008480Cucumber (Chinese Long) v2cmocuB863