Carg04900 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04900
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_060 : 138047 .. 140269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCAATTGCTCTTGCTCCCCTAGTTCAGCCGCTGGCAGCAAACGCCGGCTTCTCACCTCGGTGGACAAGTATGCTTTCTTCTCTTTTGGAATCTAAAGCATAAACAAAAAAAAATTCAAGAACTCTTCTATTCCATAACTTCAAAGAAGATTCGAGGACCGAGAATTCTATTTGGTATATCTCTCTCTCTCCCTTTCAGTTCAACAATTCTTAATTTTTTTTTTTTTTGAAATTATGTTTGAGATGATTTATCTTATCCCTGGAACTGATCGGCGTTTGTTGTCTTCTCCTTTCCAGGCCATTATTGATCTCCCTGTTCGAGAACCCAGTTAACCGAATTTGATTTTTGAGCTTTACGAGACCTTAAAGGAGCAGAAATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC

mRNA sequence

TCTCAATTGCTCTTGCTCCCCTAGTTCAGCCGCTGGCAGCAAACGCCGGCTTCTCACCTCGGTGGACAAGTATGCTTTCTTCTCTTTTGGAATCTAAAGCATAAACAAAAAAAAATTCAAGAACTCTTCTATTCCATAACTTCAAAGAAGATTCGAGGACCGAGAATTCTATTTGCTTTACGAGACCTTAAAGGAGCAGAAATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC

Coding sequence (CDS)

ATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC

Protein sequence

MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVSDFAASSS

Homology

[Close]

BLAST of Carg04900 vs. NCBI nr
Match: XP_023514674.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.7 bits (1184), Expect = 7.9e-126
Identity = 609/615 (99.02%), Postives = 611/615 (99.35%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVD+ALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMT NGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX 240
           MNVQPNVITFGILINHMCK RMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXRLLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXX LLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXLLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           XXXXXXXXXXXXXXKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 XXXXXXXXXXXXXXKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 616
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Carg04900 vs. NCBI nr
Match: XP_022960097.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata] >XP_022960098.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 458.0 bits (1177), Expect = 5.1e-125
Identity = 608/615 (98.86%), Postives = 608/615 (98.86%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHST QNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTTQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMT NGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX 240
           MNVQPNVITFGILINHMCK RMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXRLLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXX LLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXLLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           XXXXXXXXXXXXXX   KWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 XXXXXXXXXXXXXXXXXKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 616
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Carg04900 vs. NCBI nr
Match: XP_023004956.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima] >XP_023004958.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 447.2 bits (1149), Expect = 9.0e-122
Identity = 601/612 (98.20%), Postives = 604/612 (98.69%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVDEALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKEN+IAGLVAKFGKH VVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENKIAGLVAKFGKHRVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMT NGLKDAAPCNALLTGLGKE EFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEMEFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAXXXXXXXXXXXXXXXXXX 240
           MNVQPNVITF ILINHMCK RMIDDALEVFEKMKGEKEEAK XXXXXXXXXXXXXXXXXX
Sbjct: 181 MNVQPNVITFSILINHMCKFRMIDDALEVFEKMKGEKEEAKXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXRLLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXX  LGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXLGTMRSDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEACLXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           XXXXXXXXXXXXXXKEKKW+EKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 XXXXXXXXXXXXXXKEKKWMEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAA 613
           FTQGYKVSDFAA
Sbjct: 601 FTQGYKVSDFAA 612

[Close]

BLAST of Carg04900 vs. NCBI nr
Match: XP_022147524.1 (pentatricopeptide repeat-containing protein At5g28460 [Momordica charantia])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 177/210 (84.29%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 9   AVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLP 68
           AV LLRRLGR+GM +EALAVF+ELD H KNTYVRNVIIDLLLK+GRVD+A+ VLDEMLLP
Sbjct: 161 AVLLLRRLGRAGMABEALAVFSELDSHTKNTYVRNVIIDLLLKTGRVDSAMKVLDEMLLP 220

Query: 69  GSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLC 128
           GSEFRPNDITADIVFTKLLK+NG + RV+E+EIAGLVAKFGKHHV PN ITLTQLIS+LC
Sbjct: 221 GSEFRPNDITADIVFTKLLKVNGWEGRVREDEIAGLVAKFGKHHVFPNAITLTQLISRLC 280

Query: 129 RSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVI 188
           RSRN DLAW+VLDD+M  NGLKD APCNALLTGLGKEREFEKMNLLMR+MKDM++QPNVI
Sbjct: 281 RSRNTDLAWNVLDDVMKLNGLKDVAPCNALLTGLGKEREFEKMNLLMRRMKDMDIQPNVI 340

Query: 189 TFGILINHMCKSRMIDDALEVFEKMKGEKE 219
           TFGILINH+CK R IDDALEVFE+MKGEKE
Sbjct: 341 TFGILINHLCKFRRIDDALEVFERMKGEKE 370

[Close]

BLAST of Carg04900 vs. NCBI nr
Match: XP_022953646.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 358.2 bits (918), Expect = 5.5e-95
Identity = 178/217 (82.03%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           M+   A NAV+LLRRLGR+GMVDEALA F+  D H KNT VRNVIIDLLLKSGR+D+ALN
Sbjct: 1   MSRPAAHNAVHLLRRLGRAGMVDEALAAFSGFDSHTKNTNVRNVIIDLLLKSGRLDSALN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLPGSEFRPN ITADIVFTK+LK+N S+ RVKE+EIAGLVA+FG+HHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNHITADIVFTKILKLNESEGRVKEDEIAGLVAEFGEHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLIS LCRSRN DLAW+VLDD+  RNGLKDAAPCNALLTGLGK+REFEKMNLL+RKMKD
Sbjct: 121 TQLISMLCRSRNTDLAWNVLDDVFMRNGLKDAAPCNALLTGLGKKREFEKMNLLIRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEK 218
           MN+QPNVITFGILINH+CK R IDDALEVF+KMKG K
Sbjct: 181 MNIQPNVITFGILINHLCKFRRIDDALEVFDKMKGGK 217

[Close]

BLAST of Carg04900 vs. TAIR10
Match: AT3G61520.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-47
Identity = 95/208 (45.67%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML   S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K       + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKSRMIDDALEVFEKMKGEKEE 220
           ILIN +CKSR +D+ALEVFEKM+G++ +
Sbjct: 338 ILINTLCKSRRVDEALEVFEKMRGKRTD 361

[Close]

BLAST of Carg04900 vs. TAIR10
Match: AT5G28370.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-47
Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML   S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKSRMIDDALEVFEKMKGEKEE 220
           ILIN +CKSR +D+ALEVFE+M+G++ +
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTD 361

[Close]

BLAST of Carg04900 vs. TAIR10
Match: AT5G28460.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-47
Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML   S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKSRMIDDALEVFEKMKGEKEE 220
           ILIN +CKSR +D+ALEVFE+M+G++ +
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTD 361

[Close]

BLAST of Carg04900 vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-06
Identity = 46/206 (22.33%), Postives = 89/206 (43.20%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPH--KKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPG 71
           L+R  G++ M + A+  F ++D +   ++    N +++  L S   D    + D      
Sbjct: 108 LIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFD-----X 167

Query: 72  SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCR 131
              R N I  D +   +L  +  D    E  I  +    GK   V   I  T ++S L +
Sbjct: 168 XXXRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEV-TTIAFTTILSSLYK 227

Query: 132 SRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVIT 191
              +++A +              A  N  +    KE   E++  L+ +M  M ++P+ I+
Sbjct: 228 KGELEVADNXXXXXXXXXXXXXXAAYNVRIMSAQKESP-ERVKELIEEMSSMGLKPDTIS 287

Query: 192 FGILINHMCKSRMIDDALEVFEKMKG 216
           +  L+   C+  M+D+A +V+E ++G
Sbjct: 288 YNYLMTAYCERGMLDEAKKVYEGLEG 306

[Close]

BLAST of Carg04900 vs. TAIR10
Match: AT2G17670.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 7.6e-06
Identity = 35/160 (21.88%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 55  VDNALNVLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVV 114
           V++ + +   +L     FRP   T  I+ +   +   S      + +  L+   G   + 
Sbjct: 101 VNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSIS-NVHRVLNLMVNNG---LE 160

Query: 115 PNPITLTQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLL 174
           P+ +T    +  LC +  +D A  ++ +L  ++   D    N LL  L K ++   +   
Sbjct: 161 PDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEF 220

Query: 175 MRKMK-DMNVQPNVITFGILINHMCKSRMIDDALEVFEKM 214
           + +M+ D +V+P++++F ILI+++C S+ + +A+ +  K+
Sbjct: 221 VDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKL 256

[Close]

BLAST of Carg04900 vs. Swiss-Prot
Match: sp|Q9M316|PP292_ARATH (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g61520 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.5e-46
Identity = 95/208 (45.67%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML   S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K       + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKSRMIDDALEVFEKMKGEKEE 220
           ILIN +CKSR +D+ALEVFEKM+G++ +
Sbjct: 338 ILINTLCKSRRVDEALEVFEKMRGKRTD 361

[Close]

BLAST of Carg04900 vs. Swiss-Prot
Match: sp|Q9LKU8|PP401_ARATH (Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX=3702 GN=At5g28460 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.2e-46
Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML   S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKSRMIDDALEVFEKMKGEKEE 220
           ILIN +CKSR +D+ALEVFE+M+G++ +
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTD 361

[Close]

BLAST of Carg04900 vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-05
Identity = 46/206 (22.33%), Postives = 89/206 (43.20%), Query Frame = 0


Query: 12  LLRRLGRSGMVDEALAVFTELDPH--KKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPG 71
           L+R  G++ M + A+  F ++D +   ++    N +++  L S   D    + D      
Sbjct: 108 LIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFD-----X 167

Query: 72  SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCR 131
              R N I  D +   +L  +  D    E  I  +    GK   V   I  T ++S L +
Sbjct: 168 XXXRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEV-TTIAFTTILSSLYK 227

Query: 132 SRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVIT 191
              +++A +              A  N  +    KE   E++  L+ +M  M ++P+ I+
Sbjct: 228 KGELEVADNXXXXXXXXXXXXXXAAYNVRIMSAQKESP-ERVKELIEEMSSMGLKPDTIS 287

Query: 192 FGILINHMCKSRMIDDALEVFEKMKG 216
           +  L+   C+  M+D+A +V+E ++G
Sbjct: 288 YNYLMTAYCERGMLDEAKKVYEGLEG 306

[Close]

BLAST of Carg04900 vs. Swiss-Prot
Match: sp|Q84J71|PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX=3702 GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-04
Identity = 35/160 (21.88%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 55  VDNALNVLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVV 114
           V++ + +   +L     FRP   T  I+ +   +   S      + +  L+   G   + 
Sbjct: 101 VNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSIS-NVHRVLNLMVNNG---LE 160

Query: 115 PNPITLTQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLL 174
           P+ +T    +  LC +  +D A  ++ +L  ++   D    N LL  L K ++   +   
Sbjct: 161 PDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEF 220

Query: 175 MRKMK-DMNVQPNVITFGILINHMCKSRMIDDALEVFEKM 214
           + +M+ D +V+P++++F ILI+++C S+ + +A+ +  K+
Sbjct: 221 VDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKL 256

[Close]

BLAST of Carg04900 vs. Swiss-Prot
Match: sp|Q9LVD3|PP434_ARATH (Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g57250 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-04
Identity = 27/102 (26.47%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 113 VVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMN 172
           VV + IT + L+    + +NID    +    +      D   CN LL        + + +
Sbjct: 408 VVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEAD 467

Query: 173 LLMRKMKDMNVQPNVITFGILINHMCKSRMIDDALEVFEKMK 215
            L R M +M++ P+  T+  +I   CK+  I++ALE+F +++
Sbjct: 468 ALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR 509

[Close]

BLAST of Carg04900 vs. TrEMBL
Match: tr|A0A0A0K547|A0A0A0K547_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336570 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-89
Identity = 173/221 (78.28%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           M+ STAQ++V+LLRRLGR GMVDEALA F+ LD H KNT VRN II+LLLKSGRVDNA+N
Sbjct: 1   MSLSTAQSSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNAMN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPND TA IVF  LLKI+G + RVKE+EIAGLV+KFGKH++ P+ I L
Sbjct: 61  VLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIAL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRS N +LAW++LD+LM  NGLKDAAPCNALLTGLGK REF KMNLLMRKMKD
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAK 222
           MN+QP VITFGILINH+CK R IDDALEVFEKMKGEKEE K
Sbjct: 181 MNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETK 221

[Close]

BLAST of Carg04900 vs. TrEMBL
Match: tr|A0A1S3BGI7|A0A1S3BGI7_CUCME (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103489753 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87
Identity = 170/221 (76.92%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           M+ STAQ+AV+LLR LGR GMVDEALA F+ LD H KNT VRN II+LLLKSGRVDNALN
Sbjct: 1   MSLSTAQSAVHLLRHLGRVGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNALN 60

Query: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VL EMLLP SEFRPND TA IVF K+LKI+GS+ R KE+EIAGLV+KFGK+++ P+ I L
Sbjct: 61  VLYEMLLPESEFRPNDKTAGIVFNKMLKIDGSEGRAKEDEIAGLVSKFGKYNIFPDTIAL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRS N +LAW++LD++M  NGLKDAAPCNALLTGLGK REF KMNLLMRKMKD
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNMMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAK 222
           MN+QP VITFGILIN++CK R IDDALEVFEKMKGEKEEA+
Sbjct: 181 MNIQPTVITFGILINYLCKFRRIDDALEVFEKMKGEKEEAE 221

[Close]

BLAST of Carg04900 vs. TrEMBL
Match: tr|A0A2I4GBD3|A0A2I4GBD3_9ROSI (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC109006406 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 120/211 (56.87%), Postives = 153/211 (72.51%), Query Frame = 0


Query: 5   TAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDE 64
           T   A  L+R LGR+  VD ALAV  ELDP  KNT+  NV++D+L KSGR+  ALN+LDE
Sbjct: 160 TVNGATLLVRFLGRAERVDVALAVVDELDPSLKNTHFYNVVVDVLFKSGRIVEALNMLDE 219

Query: 65  MLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLI 124
           ML PG++  PNDIT  +VF  L         + + EI GLV+K G H VVP+   LTQLI
Sbjct: 220 MLQPGADCPPNDITGGVVFAALSGRKLFGRSISDEEIVGLVSKLGAHGVVPDSFKLTQLI 279

Query: 125 SKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQ 184
           +KLCR++ I  AW VL D+M   G  +AA CNALLTGLG++ +FE+MN LM +MK+M++Q
Sbjct: 280 TKLCRNKKIGRAWDVLHDVMKAGGTLEAASCNALLTGLGRDGDFERMNTLMTEMKEMDIQ 339

Query: 185 PNVITFGILINHMCKSRMIDDALEVFEKMKG 216
           P+V+TFGILINHMCK+R +D+ALEVFEKMKG
Sbjct: 340 PDVVTFGILINHMCKARRVDEALEVFEKMKG 370

[Close]

BLAST of Carg04900 vs. TrEMBL
Match: tr|D7UCE3|D7UCE3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g02180 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 117/207 (56.52%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 9   AVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLP 68
           A  L+R  GR+ MVDE+  V+ EL P ++ T++RN++ID+L + GRVD+AL++LDEML P
Sbjct: 162 ATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQP 221

Query: 69  GSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLC 128
            +EF PN  T  IVF+ L K +     V E EI GLV+KF +H V PN I LTQLIS+LC
Sbjct: 222 KAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLC 281

Query: 129 RSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVI 188
           RS   D AW VL  LM   G+ +AA CNALLT LG+ REF++MN L+ +MK+M++QPNV+
Sbjct: 282 RSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVV 341

Query: 189 TFGILINHMCKSRMIDDALEVFEKMKG 216
           TFGILINH+CK R +D+ALEVFEKM G
Sbjct: 342 TFGILINHLCKFRRVDEALEVFEKMNG 368

[Close]

BLAST of Carg04900 vs. TrEMBL
Match: tr|A0A2P4K3V9|A0A2P4K3V9_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_56223 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58
Identity = 116/210 (55.24%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 5   TAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDE 64
           T   A  L+R LGR+GMVD+ L +  E+DP  KNT+  NV+ID++ + GRVD+AL VLDE
Sbjct: 151 TINAATLLIRCLGRAGMVDQVLVLVKEVDPSLKNTHFCNVVIDVMFRLGRVDDALKVLDE 210

Query: 65  MLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLI 124
           ML P SE  PND T DI+F  +L+       + + EI GLV+KFG+H V P+   LTQLI
Sbjct: 211 MLQPDSECPPNDSTGDIIFGAMLRREWRGRSINDEEIVGLVSKFGEHDVFPDTFKLTQLI 270

Query: 125 SKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQ 184
           +K CR+R    AW +L D+M   G+ +AA CNALLTGLGK  +F++MN L  +MK+MN+Q
Sbjct: 271 TKFCRNRKTGRAWDLLHDVMKSGGVVEAASCNALLTGLGKGGDFDRMNKLTTEMKEMNIQ 330

Query: 185 PNVITFGILINHMCKSRMIDDALEVFEKMK 215
           PNV+TFGILIN MCKSR +D+ALEVF+KMK
Sbjct: 331 PNVVTFGILINLMCKSRRVDEALEVFKKMK 360

The following BLAST results are available for this feature:

BLAST of Carg04900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514674.1	7.9e-126	99.02	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
XP_022960097.1	5.1e-125	98.86	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
XP_023004956.1	9.0e-122	98.20	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
XP_022147524.1	3.2e-95	84.29	pentatricopeptide repeat-containing protein At5g28460 [Momordica charantia]	[more]
XP_022953646.1	5.5e-95	82.03	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]

BLAST of Carg04900 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61520.1	1.4e-47	45.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G28370.1	1.8e-47	45.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G28460.1	1.8e-47	45.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G36680.1	1.2e-06	22.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G17670.1	7.6e-06	21.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg04900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M316\|PP292_ARATH	2.5e-46	45.67	Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidop...	[more]
sp\|Q9LKU8\|PP401_ARATH	3.2e-46	45.19	Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9M065\|PP352_ARATH	2.1e-05	22.33	Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop...	[more]
sp\|Q84J71\|PP161_ARATH	1.4e-04	21.88	Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LVD3\|PP434_ARATH	2.3e-04	26.47	Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidop...	[more]

BLAST of Carg04900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K547\|A0A0A0K547_CUCSA	1.0e-89	78.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336570 PE=4 SV=1	[more]
tr\|A0A1S3BGI7\|A0A1S3BGI7_CUCME	1.3e-87	76.92	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cuc...	[more]
tr\|A0A2I4GBD3\|A0A2I4GBD3_9ROSI	1.1e-59	56.87	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Jug...	[more]
tr\|D7UCE3\|D7UCE3_VITVI	2.1e-58	56.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g02180 PE=4 SV=...	[more]
tr\|A0A2P4K3V9\|A0A2P4K3V9_QUESU	4.6e-58	55.24	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04900-RA	Carg04900-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 203..223
None	No IPR available	PANTHER	PTHR24015:SF771	F21B23.6 PROTEIN	coord: 18..573
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 18..573
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 311..533
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 43..66 e-value: 0.014 score: 15.5 coord: 119..145 e-value: 0.68 score: 10.2 coord: 12..31 e-value: 0.85 score: 9.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 546..575 e-value: 6.4E-5 score: 20.9 coord: 403..437 e-value: 1.5E-7 score: 29.1 coord: 333..367 e-value: 2.4E-11 score: 41.1 coord: 438..471 e-value: 1.8E-6 score: 25.7 coord: 155..187 e-value: 2.5E-5 score: 22.2 coord: 510..544 e-value: 4.4E-9 score: 34.0 coord: 228..262 e-value: 1.3E-9 score: 35.6 coord: 298..331 e-value: 3.0E-8 score: 31.3 coord: 263..297 e-value: 7.0E-10 score: 36.5 coord: 188..217 e-value: 1.5E-6 score: 26.0 coord: 474..508 e-value: 8.5E-8 score: 29.9 coord: 119..148 e-value: 0.0017 score: 16.4 coord: 369..401 e-value: 1.4E-5 score: 22.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 331..378 e-value: 3.7E-13 score: 49.3 coord: 507..554 e-value: 8.3E-17 score: 61.0 coord: 260..309 e-value: 5.4E-18 score: 64.8 coord: 401..444 e-value: 6.0E-14 score: 51.8
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 223..254 e-value: 7.6E-10 score: 38.2 coord: 469..500 e-value: 2.2E-10 score: 40.0 coord: 182..214 e-value: 1.8E-10 score: 40.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 116..150 score: 7.958
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 38..72 score: 8.736
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 186..220 score: 10.446
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..295 score: 13.395
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 472..506 score: 11.422
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 226..260 score: 13.921
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 436..470 score: 11.192
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 151..185 score: 9.613
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 5..35 score: 5.722
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 508..542 score: 12.277
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 401..435 score: 12.682
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 331..365 score: 13.307
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 366..400 score: 10.337
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 296..330 score: 12.375
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 543..577 score: 10.139
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 467..612 e-value: 8.6E-35 score: 122.7 coord: 99..220 e-value: 3.6E-23 score: 84.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 221..325 e-value: 1.8E-36 score: 128.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 6..98 e-value: 1.2E-10 score: 43.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 327..393 e-value: 1.2E-19 score: 72.5 coord: 394..466 e-value: 1.0E-20 score: 76.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04900	CmaCh17G012490	Cucurbita maxima (Rimu)	carcmaB0107
Carg04900	CmaCh08G000690	Cucurbita maxima (Rimu)	carcmaB0112
Carg04900	CmoCh17G012300	Cucurbita moschata (Rifu)	carcmoB0115
Carg04900	CmoCh08G000690	Cucurbita moschata (Rifu)	carcmoB0119
Carg04900	Cp4.1LG12g11160	Cucurbita pepo (Zucchini)	carcpeB0118
Carg04900	Cp4.1LG17g09880	Cucurbita pepo (Zucchini)	carcpeB0125

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04900	Carg25535	Silver-seed gourd	carcarB094

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04900	Cucumber (Gy14) v2	carcgybB0096
Carg04900	Cucumber (Gy14) v1	carcgyB0094
Carg04900	Cucurbita pepo (Zucchini)	carcpeB0124
Carg04900	Wild cucumber (PI 183967)	carcpiB0100
Carg04900	Cucumber (Chinese Long) v2	carcuB0096
Carg04900	Cucumber (Chinese Long) v3	carcucB0103
Carg04900	Bottle gourd (USVL1VR-Ls)	carlsiB075
Carg04900	Melon (DHL92) v3.5.1	carmeB0080
Carg04900	Melon (DHL92) v3.6.1	carmedB0081
Carg04900	Watermelon (Charleston Gray)	carwcgB0081
Carg04900	Watermelon (Charleston Gray)	carwcgB0083
Carg04900	Watermelon (97103) v1	carwmB0080
Carg04900	Watermelon (97103) v2	carwmbB0086
Carg04900	Wax gourd	carwgoB0097