Carg04900-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTCAATTGCTCTTGCTCCCCTAGTTCAGCCGCTGGCAGCAAACGCCGGCTTCTCACCTCGGTGGACAAGTATGCTTTCTTCTCTTTTGGAATCTAAAGCATAAACAAAAAAAAATTCAAGAACTCTTCTATTCCATAACTTCAAAGAAGATTCGAGGACCGAGAATTCTATTTGGTATATCTCTCTCTCTCCCTTTCAGTTCAACAATTCTTAATTTTTTTTTTTTTTGAAATTATGTTTGAGATGATTTATCTTATCCCTGGAACTGATCGGCGTTTGTTGTCTTCTCCTTTCCAGGCCATTATTGATCTCCCTGTTCGAGAACCCAGTTAACCGAATTTGATTTTTGAGCTTTACGAGACCTTAAAGGAGCAGAAATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC TCTCAATTGCTCTTGCTCCCCTAGTTCAGCCGCTGGCAGCAAACGCCGGCTTCTCACCTCGGTGGACAAGTATGCTTTCTTCTCTTTTGGAATCTAAAGCATAAACAAAAAAAAATTCAAGAACTCTTCTATTCCATAACTTCAAAGAAGATTCGAGGACCGAGAATTCTATTTGCTTTACGAGACCTTAAAGGAGCAGAAATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC ATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATGAGGCGCTTGCTGTGTTCACTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGGTTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATAGATCTTGCATGGAGTGTTTTAGATGATTTGATGACACGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTCCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACTGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGTGCAATCGAGACAGCCCATGCGCTCTATGACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCACGGCAGAATAAGCAGCGCGGTCGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATCAATGCTTTTTGCAAAGTGAACAATATCGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGACGATGCCACCTCTGTTGCATCGAGGATGAAAGCAGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATTTAGAATTAGCCCTTAAATTTATGGAAAAGATGACCAAGGAAGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAACACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTGAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCATGTAATGCTGATTATATAACAATGGAAATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGC MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVSDFAASSS
BLAST of Carg04900-RA vs. NCBI nr
Match: XP_023514674.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 460.7 bits (1184), Expect = 7.9e-126 Identity = 609/615 (99.02%), Postives = 611/615 (99.35%), Query Frame = 0
BLAST of Carg04900-RA vs. NCBI nr
Match: XP_022960097.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata] >XP_022960098.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 458.0 bits (1177), Expect = 5.1e-125 Identity = 608/615 (98.86%), Postives = 608/615 (98.86%), Query Frame = 0
BLAST of Carg04900-RA vs. NCBI nr
Match: XP_023004956.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima] >XP_023004958.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 447.2 bits (1149), Expect = 9.0e-122 Identity = 601/612 (98.20%), Postives = 604/612 (98.69%), Query Frame = 0
BLAST of Carg04900-RA vs. NCBI nr
Match: XP_022147524.1 (pentatricopeptide repeat-containing protein At5g28460 [Momordica charantia]) HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95 Identity = 177/210 (84.29%), Postives = 195/210 (92.86%), Query Frame = 0
BLAST of Carg04900-RA vs. NCBI nr
Match: XP_022953646.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 358.2 bits (918), Expect = 5.5e-95 Identity = 178/217 (82.03%), Postives = 197/217 (90.78%), Query Frame = 0
BLAST of Carg04900-RA vs. TAIR10
Match: AT3G61520.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-47 Identity = 95/208 (45.67%), Postives = 141/208 (67.79%), Query Frame = 0
BLAST of Carg04900-RA vs. TAIR10
Match: AT5G28370.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 188.0 bits (476), Expect = 1.8e-47 Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0
BLAST of Carg04900-RA vs. TAIR10
Match: AT5G28460.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 188.0 bits (476), Expect = 1.8e-47 Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0
BLAST of Carg04900-RA vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 52.4 bits (124), Expect = 1.2e-06 Identity = 46/206 (22.33%), Postives = 89/206 (43.20%), Query Frame = 0
BLAST of Carg04900-RA vs. TAIR10
Match: AT2G17670.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 49.7 bits (117), Expect = 7.6e-06 Identity = 35/160 (21.88%), Postives = 78/160 (48.75%), Query Frame = 0
BLAST of Carg04900-RA vs. Swiss-Prot
Match: sp|Q9M316|PP292_ARATH (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g61520 PE=2 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.5e-46 Identity = 95/208 (45.67%), Postives = 141/208 (67.79%), Query Frame = 0
BLAST of Carg04900-RA vs. Swiss-Prot
Match: sp|Q9LKU8|PP401_ARATH (Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX=3702 GN=At5g28460 PE=2 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 3.2e-46 Identity = 94/208 (45.19%), Postives = 142/208 (68.27%), Query Frame = 0
BLAST of Carg04900-RA vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 2.1e-05 Identity = 46/206 (22.33%), Postives = 89/206 (43.20%), Query Frame = 0
BLAST of Carg04900-RA vs. Swiss-Prot
Match: sp|Q84J71|PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX=3702 GN=At2g17670 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.4e-04 Identity = 35/160 (21.88%), Postives = 78/160 (48.75%), Query Frame = 0
BLAST of Carg04900-RA vs. Swiss-Prot
Match: sp|Q9LVD3|PP434_ARATH (Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g57250 PE=2 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 2.3e-04 Identity = 27/102 (26.47%), Postives = 50/102 (49.02%), Query Frame = 0
BLAST of Carg04900-RA vs. TrEMBL
Match: tr|A0A0A0K547|A0A0A0K547_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336570 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 1.0e-89 Identity = 173/221 (78.28%), Postives = 193/221 (87.33%), Query Frame = 0
BLAST of Carg04900-RA vs. TrEMBL
Match: tr|A0A1S3BGI7|A0A1S3BGI7_CUCME (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103489753 PE=4 SV=1) HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87 Identity = 170/221 (76.92%), Postives = 193/221 (87.33%), Query Frame = 0
BLAST of Carg04900-RA vs. TrEMBL
Match: tr|A0A2I4GBD3|A0A2I4GBD3_9ROSI (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC109006406 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59 Identity = 120/211 (56.87%), Postives = 153/211 (72.51%), Query Frame = 0
BLAST of Carg04900-RA vs. TrEMBL
Match: tr|D7UCE3|D7UCE3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g02180 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58 Identity = 117/207 (56.52%), Postives = 152/207 (73.43%), Query Frame = 0
BLAST of Carg04900-RA vs. TrEMBL
Match: tr|A0A2P4K3V9|A0A2P4K3V9_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_56223 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58 Identity = 116/210 (55.24%), Postives = 151/210 (71.90%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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