Carg04455 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04455
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_032 : 517171 .. 519072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCGAATTCCCGCTTCGAATCTCACCAAACTCTCGAAGCCCTTCGTCTTCCTCGCTTCAATTCCCAAGTCAAATTTTTCTTCTGCTTCATCCTCAACATTTTTACCATCAATTCCTCGGTCCGAAACTAAATTAACCGTCAACCCTCTTTACCATTTTCTCCCACAAAACCAAAACCCCTTCAACATCGTTGAACTCGTCTCCTCGCACCTCAAAACCAGCAACACGCAGTTGTCTCTTCTTCAATCCGACATTAAGGAGCTTCTTCCCCATTTGGGTCATCGTGAAATCTCCAAGATTATATTGAGGTGCCAATCTAATTTCGTCTCTGTTCTTGCCTTTTTCAATTGGGTTAAATTTGATTTGGGGATTACACTTAATTCTCAAAACTATTGTCTTATTATCCATATATTGGCATGGTCCCGACAATTTTCCATGGCGATGAAATTCTTGTCTGAATTGATTGAGTTGTCTAAGGATAATGCCTCAGGTAGTGAGGATGTTTTTCATAATCTGGTATTGTGCACTGAGCACTGTAATTGGAATCCTGTTATCTTTGAAATGCTTATTAAGGCGTATGTGAAAGTTCATATGATTCAGGAAAGTTATGAGAGCTTTAAGAAGATGGTGAAAATGGGTTTTGTTCCAAGTGTGATTGCTTGTAATTGTATTCTAAATGGACTGGCGAAGATGAAGTGTGATGCTCAATGTTGGGAACTCTATGAAGAAATGGGAAGGATTGGAGTTCACTCAAATGCATATACTTTTAATATTTTGACTTATGTTTTGTGTAGAGTTGGGGATGTAAATAAGGTTAATGAGTTCTTAGAAAAGATGGAAGAAGAGGGATTCGATCCCGACGTCGTGACGTACAATACTTTGATCGATAGCTATTGCCGAAGAGGAAGATTAGATGATGCATTCTATTTATATAGGATAATGTTTAGAAGGGGTGTGATGCCTGATCTTGTTTCATATACTTCCTTGATGAATGGTCTTTGTAAGTTAGGAAGGGTAAGAGAGGCCCATCAGCTATTTCATCGAATGATTGATCGAGAATTGGATCCCGATGTCGTATTGTATAATACGCTAATTCATGCATATTGCAAGGATGGAAGGCTGCAAGAGGCAAGATCATTGCTACACGATATGATTCGAATTGGCATTTGCCCTGATAGTTTCACTTGTAGGATTATGGTGGAAGGATATGGAAGAGGAGGTAGCTTGGTCTCAGCTTTGAATTTGGTTGTCGAACTTCGGAAACTTGGAACGATTGTTACTTACGAGATATATGATTATCTTATCGTGTCGTTGTGTCTGGAAGATCGTCCATTTGCAGCTAAGAGTGTTCTTGAAAGAATCATTAAAGATGGTTTCCAACCTAATGCTTGTATCTACAACAAGCTGATTGAATCTTTCTGCAGAGTTCATAATGTTTCTGAAGCACTGCTTTTGAAATCTGAAATGGTAAAGAGAAATTTTAAACTTAGCATTGATTCATACAAGCCTCTTATATCCTGTTTGTGTGGAATCAATAGAAGTGTAGATGGTGAAGGTTTAATGGTAGAAATGGCTGAATCTGGAGTGCTTCCGGATCATCAAATATGCAGAGTATTGATAAATGGATACTGCAAAGAAGGGAATGTTTATAAAGCAGAATCATTATTGGTATCATTTGCTAAAGATTTTGAGTTCTTTGACACTGAAAGTTTCAATGCCTTGGTTAAATTTCATCGTGATTTTGGTAATGAAACGGAGTTGATGCAGCTACAAGATCGAATGCTGAAAGTCGGTTTCGTTCCGAATAGCTTAACGTGCCGATACGTTATCCATGGATTATGGAAATCTGCAAGGCTCGACGAGCGGAGAGTTCAGGCTCCTCTCTGCCAAAGAGGGTGA

mRNA sequence

ATGCATCGAATTCCCGCTTCGAATCTCACCAAACTCTCGAAGCCCTTCGTCTTCCTCGCTTCAATTCCCAAGTCAAATTTTTCTTCTGCTTCATCCTCAACATTTTTACCATCAATTCCTCGGTCCGAAACTAAATTAACCGTCAACCCTCTTTACCATTTTCTCCCACAAAACCAAAACCCCTTCAACATCGTTGAACTCGTCTCCTCGCACCTCAAAACCAGCAACACGCAGTTGTCTCTTCTTCAATCCGACATTAAGGAGCTTCTTCCCCATTTGGGTCATCGTGAAATCTCCAAGATTATATTGAGGTGCCAATCTAATTTCGTCTCTGTTCTTGCCTTTTTCAATTGGGTTAAATTTGATTTGGGGATTACACTTAATTCTCAAAACTATTGTCTTATTATCCATATATTGGCATGGTCCCGACAATTTTCCATGGCGATGAAATTCTTGTCTGAATTGATTGAGTTGTCTAAGGATAATGCCTCAGGTAGTGAGGATGTTTTTCATAATCTGGTATTGTGCACTGAGCACTGTAATTGGAATCCTGTTATCTTTGAAATGCTTATTAAGGCGTATGTGAAAGTTCATATGATTCAGGAAAGTTATGAGAGCTTTAAGAAGATGGTGAAAATGGGTTTTGTTCCAAGTGTGATTGCTTGTAATTGTATTCTAAATGGACTGGCGAAGATGAAGTGTGATGCTCAATGTTGGGAACTCTATGAAGAAATGGGAAGGATTGGAGTTCACTCAAATGCATATACTTTTAATATTTTGACTTATGTTTTGTGTAGAGTTGGGGATGTAAATAAGGTTAATGAGTTCTTAGAAAAGATGGAAGAAGAGGGATTCGATCCCGACGTCGTGACGTACAATACTTTGATCGATAGCTATTGCCGAAGAGGAAGATTAGATGATGCATTCTATTTATATAGGATAATGTTTAGAAGGGGTGTGATGCCTGATCTTGTTTCATATACTTCCTTGATGAATGGTCTTTGTAAGTTAGGAAGGGTAAGAGAGGCCCATCAGCTATTTCATCGAATGATTGATCGAGAATTGGATCCCGATGTCGTATTGTATAATACGCTAATTCATGCATATTGCAAGGATGGAAGGCTGCAAGAGGCAAGATCATTGCTACACGATATGATTCGAATTGGCATTTGCCCTGATAGTTTCACTTGTAGGATTATGGTGGAAGGATATGGAAGAGGAGGTAGCTTGGTCTCAGCTTTGAATTTGGTTGTCGAACTTCGGAAACTTGGAACGATTGTTACTTACGAGATATATGATTATCTTATCGTGTCGTTGTGTCTGGAAGATCGTCCATTTGCAGCTAAGAGTGTTCTTGAAAGAATCATTAAAGATGGTTTCCAACCTAATGCTTGTATCTACAACAAGCTGATTGAATCTTTCTGCAGAGTTCATAATGTTTCTGAAGCACTGCTTTTGAAATCTGAAATGGTAAAGAGAAATTTTAAACTTAGCATTGATTCATACAAGCCTCTTATATCCTGTTTGTGTGGAATCAATAGAAGTGTAGATGGTGAAGGTTTAATGGTAGAAATGGCTGAATCTGGAGTGCTTCCGGATCATCAAATATGCAGAGTATTGATAAATGGATACTGCAAAGAAGGGAATGTTTATAAAGCAGAATCATTATTGGTATCATTTGCTAAAGATTTTGAGTTCTTTGACACTGAAAGTTTCAATGCCTTGGTTAAATTTCATCGTGATTTTGGTAATGAAACGGAGTTGATGCAGCTACAAGATCGAATGCTGAAAGTCGGTTTCGTTCCGAATAGCTTAACGTGCCGATACGTTATCCATGGATTATGGAAATCTGCAAGGCTCGACGAGCGGAGAGTTCAGGCTCCTCTCTGCCAAAGAGGGTGA

Coding sequence (CDS)

ATGCATCGAATTCCCGCTTCGAATCTCACCAAACTCTCGAAGCCCTTCGTCTTCCTCGCTTCAATTCCCAAGTCAAATTTTTCTTCTGCTTCATCCTCAACATTTTTACCATCAATTCCTCGGTCCGAAACTAAATTAACCGTCAACCCTCTTTACCATTTTCTCCCACAAAACCAAAACCCCTTCAACATCGTTGAACTCGTCTCCTCGCACCTCAAAACCAGCAACACGCAGTTGTCTCTTCTTCAATCCGACATTAAGGAGCTTCTTCCCCATTTGGGTCATCGTGAAATCTCCAAGATTATATTGAGGTGCCAATCTAATTTCGTCTCTGTTCTTGCCTTTTTCAATTGGGTTAAATTTGATTTGGGGATTACACTTAATTCTCAAAACTATTGTCTTATTATCCATATATTGGCATGGTCCCGACAATTTTCCATGGCGATGAAATTCTTGTCTGAATTGATTGAGTTGTCTAAGGATAATGCCTCAGGTAGTGAGGATGTTTTTCATAATCTGGTATTGTGCACTGAGCACTGTAATTGGAATCCTGTTATCTTTGAAATGCTTATTAAGGCGTATGTGAAAGTTCATATGATTCAGGAAAGTTATGAGAGCTTTAAGAAGATGGTGAAAATGGGTTTTGTTCCAAGTGTGATTGCTTGTAATTGTATTCTAAATGGACTGGCGAAGATGAAGTGTGATGCTCAATGTTGGGAACTCTATGAAGAAATGGGAAGGATTGGAGTTCACTCAAATGCATATACTTTTAATATTTTGACTTATGTTTTGTGTAGAGTTGGGGATGTAAATAAGGTTAATGAGTTCTTAGAAAAGATGGAAGAAGAGGGATTCGATCCCGACGTCGTGACGTACAATACTTTGATCGATAGCTATTGCCGAAGAGGAAGATTAGATGATGCATTCTATTTATATAGGATAATGTTTAGAAGGGGTGTGATGCCTGATCTTGTTTCATATACTTCCTTGATGAATGGTCTTTGTAAGTTAGGAAGGGTAAGAGAGGCCCATCAGCTATTTCATCGAATGATTGATCGAGAATTGGATCCCGATGTCGTATTGTATAATACGCTAATTCATGCATATTGCAAGGATGGAAGGCTGCAAGAGGCAAGATCATTGCTACACGATATGATTCGAATTGGCATTTGCCCTGATAGTTTCACTTGTAGGATTATGGTGGAAGGATATGGAAGAGGAGGTAGCTTGGTCTCAGCTTTGAATTTGGTTGTCGAACTTCGGAAACTTGGAACGATTGTTACTTACGAGATATATGATTATCTTATCGTGTCGTTGTGTCTGGAAGATCGTCCATTTGCAGCTAAGAGTGTTCTTGAAAGAATCATTAAAGATGGTTTCCAACCTAATGCTTGTATCTACAACAAGCTGATTGAATCTTTCTGCAGAGTTCATAATGTTTCTGAAGCACTGCTTTTGAAATCTGAAATGGTAAAGAGAAATTTTAAACTTAGCATTGATTCATACAAGCCTCTTATATCCTGTTTGTGTGGAATCAATAGAAGTGTAGATGGTGAAGGTTTAATGGTAGAAATGGCTGAATCTGGAGTGCTTCCGGATCATCAAATATGCAGAGTATTGATAAATGGATACTGCAAAGAAGGGAATGTTTATAAAGCAGAATCATTATTGGTATCATTTGCTAAAGATTTTGAGTTCTTTGACACTGAAAGTTTCAATGCCTTGGTTAAATTTCATCGTGATTTTGGTAATGAAACGGAGTTGATGCAGCTACAAGATCGAATGCTGAAAGTCGGTTTCGTTCCGAATAGCTTAACGTGCCGATACGTTATCCATGGATTATGGAAATCTGCAAGGCTCGACGAGCGGAGAGTTCAGGCTCCTCTCTGCCAAAGAGGGTGA

Protein sequence

MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQNPFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLAKMKCDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRVGDVNKVNEFLEKMEEEGFDPDVVTYNTLIDSYCRRGRLDDAFYLYRIMFRRGVMPDLVSYTSLMNGLCKLGRVREAHQLFHRMIDRELDPDVVLYNTLIHAYCKDGRLQEARSLLHDMIRIGICPDSFTCRIMVEGYGRGGSLVSALNLVVELRKLGTIVTYEIYDYLIVSLCLEDRPFAAKSVLERIIKDGFQPNACIYNKLIESFCRVHNVSEALLLKSEMVKRNFKLSIDSYKPLISCLCGINRSVDGEGLMVEMAESGVLPDHQICRVLINGYCKEGNVYKAESLLVSFAKDFEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGFVPNSLTCRYVIHGLWKSARLDERRVQAPLCQRG

Homology

[Close]

BLAST of Carg04455 vs. NCBI nr
Match: XP_022922085.1 (pentatricopeptide repeat-containing protein At5g40400 [Cucurbita moschata])

HSP 1 Score: 461.8 bits (1187), Expect = 3.6e-126
Identity = 625/633 (98.74%), Postives = 628/633 (99.21%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKL VNPLYHFLPQNQN
Sbjct: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLIVNPLYHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVELVSSHLKTSNT LSLLQSDIKELLPHLGHRE+SKIILRCQSNFVSVLAFFNWVK
Sbjct: 61  PFNIVELVSSHLKTSNTNLSLLQSDIKELLPHLGHREVSKIILRCQSNFVSVLAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           FDLGITL+SQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC
Sbjct: 121 FDLGITLSSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLXXXXXXXXXXX 240
           NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLXXXXXXXXXXX
Sbjct: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF 600
           XXXXXXXXXXXXXXXXXXXXX   EFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXKDFEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF 600

Query: 601 VPNSLTCRYVIHGLWKSARLDERRVQAPLCQRG 634
           VPNSLTCRYVIHGLWKSARLD+RRVQAPLCQRG
Sbjct: 601 VPNSLTCRYVIHGLWKSARLDKRRVQAPLCQRG 633

[Close]

BLAST of Carg04455 vs. NCBI nr
Match: XP_023535833.1 (pentatricopeptide repeat-containing protein At5g40400 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 625/633 (98.74%), Postives = 627/633 (99.05%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           MHRIPASNLTKLSKPF FLASIPKSNFSSASSSTFL SIPRSETKL VNPLYHFLPQNQN
Sbjct: 1   MHRIPASNLTKLSKPFFFLASIPKSNFSSASSSTFLQSIPRSETKLIVNPLYHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK
Sbjct: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC
Sbjct: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLXXXXXXXXXXX 240
           NWNPVIFEML+KAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL XXXXXXXXXX
Sbjct: 181 NWNPVIFEMLMKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLAXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF 600
           XXXXXXXXXXXXXXXXXXXXXX  EFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXDFEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF 600

Query: 601 VPNSLTCRYVIHGLWKSARLDERRVQAPLCQRG 634
           VPNSLTCRYVIHGLWKSARLD+RRVQAPLCQRG
Sbjct: 601 VPNSLTCRYVIHGLWKSARLDKRRVQAPLCQRG 633

[Close]

BLAST of Carg04455 vs. NCBI nr
Match: XP_022991028.1 (pentatricopeptide repeat-containing protein At5g40400 [Cucurbita maxima])

HSP 1 Score: 454.9 bits (1169), Expect = 4.4e-124
Identity = 624/633 (98.58%), Postives = 627/633 (99.05%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFL S+PRSETKL VNPLYHFLPQNQN
Sbjct: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLQSVPRSETKLIVNPLYHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVELVSSHLKTSNT LSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK
Sbjct: 61  PFNIVELVSSHLKTSNTHLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC
Sbjct: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGLXXXXXXXXXXX 240
           NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACN ILNGL XXXXXXXXXX
Sbjct: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNRILNGLAXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXEFFDTESFNALVKFHRDFGNETELMQLQDRMLKVGF 600
           XXXXXXXXXXXXXXXXXXXXXXX EFFDTESFNAL+KFHRDFGNETELMQLQDRMLKVGF
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXFEFFDTESFNALLKFHRDFGNETELMQLQDRMLKVGF 600

Query: 601 VPNSLTCRYVIHGLWKSARLDERRVQAPLCQRG 634
           VPNSLTCRYVIHGLWKSARLD+RRVQAPLCQRG
Sbjct: 601 VPNSLTCRYVIHGLWKSARLDKRRVQAPLCQRG 633

[Close]

BLAST of Carg04455 vs. NCBI nr
Match: XP_022134396.1 (pentatricopeptide repeat-containing protein At5g40400 [Momordica charantia] >XP_022134397.1 pentatricopeptide repeat-containing protein At5g40400 [Momordica charantia] >XP_022134398.1 pentatricopeptide repeat-containing protein At5g40400 [Momordica charantia])

HSP 1 Score: 345.5 bits (885), Expect = 3.8e-91
Identity = 174/229 (75.98%), Postives = 194/229 (84.72%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           MHR   S+L KLS  F  LA +PKS FSSASSSTFL  IP S+ +L VNPL+HFLPQNQN
Sbjct: 1   MHRTSTSSLAKLSPSFFCLAFVPKSAFSSASSSTFLQPIPESQAQLIVNPLFHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVE+V SHLKT N +L+ LQS+IKELLPHLGHRE+SK++LRCQSNF S LAFFNWVK
Sbjct: 61  PFNIVEIVCSHLKTGNPELARLQSEIKELLPHLGHREVSKVLLRCQSNFGSALAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           +DL +  NS+NYCLIIHILAWSRQ  +AMKFLSELIELS+      EDVF NLVLCTEHC
Sbjct: 121 YDLNLRPNSKNYCLIIHILAWSRQLPLAMKFLSELIELSE------EDVFQNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           NWNPVIFEMLIKAY+KV MIQESY SFKKMV++GFVPSVIACNCILNGL
Sbjct: 181 NWNPVIFEMLIKAYMKVGMIQESYWSFKKMVRLGFVPSVIACNCILNGL 223

[Close]

BLAST of Carg04455 vs. NCBI nr
Match: XP_008458797.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g40400 [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 2.5e-90
Identity = 176/229 (76.86%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           M R  ASNL KLS+ F FL+S  KS  S    STFL SIP SE K  VNPLYHFLPQNQN
Sbjct: 1   MLRTTASNLPKLSQSFFFLSSFSKSTLSXXXXSTFLQSIPESEAKSIVNPLYHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVELVS HLKT+N +L+LLQ++IK L+P+LGH +ISKI+LRCQSNFVS LAFFNWVK
Sbjct: 61  PFNIVELVSLHLKTNNPRLALLQANIKGLIPYLGHCQISKILLRCQSNFVSALAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           +DL I LNS NYCLIIHILAWSRQF +AMK LSELIELSKD  S SEDVF NLVLCTEHC
Sbjct: 121 YDLDIRLNSHNYCLIIHILAWSRQFPLAMKLLSELIELSKD-VSSSEDVFQNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           NWNPVIFEMLIKAYVK+ +I ESY SFKKMVK+GFVPSVIACNCIL+GL
Sbjct: 181 NWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPSVIACNCILHGL 228

[Close]

BLAST of Carg04455 vs. TAIR10
Match: AT5G40400.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-41
Identity = 90/198 (45.45%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 27  FSSASSSTFLPSIPRSET--KLTVNPLYHFLPQNQNPFNIVELVSSHLKTSNTQLSL--L 86
           FSS SSS     +PR     K  +NPLY+ LPQ+QNP  IV+++ S L  S+  + L  L
Sbjct: 11  FSSYSSSI----VPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNL 70

Query: 87  QSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWS 146
           + ++K L+PHLG+ EIS+++LR QS+    + FF WVKFDLG   N  NYCL++HIL  S
Sbjct: 71  RDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSS 130

Query: 147 RQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQE 206
           ++F +AM+FL ELIEL+  +     DVF  LV  T+ CNW+PV+F+ML+K Y+K+ +++E
Sbjct: 131 KKFPLAMQFLCELIELT--SKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEE 190

Query: 207 SYESFKKMVKMGFVPSVI 221
            +  F++++  GF  SV+
Sbjct: 191 GFRVFREVLDSGFSVSVV 202

[Close]

BLAST of Carg04455 vs. TAIR10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 9.5e-12
Identity = 45/184 (24.46%), Postives = 86/184 (46.74%), Query Frame = 0


Query: 55  LPQNQNP------FNIVELVSSHLKTSNTQLSLLQSD---IKELLPHLGHREISKIILRC 114
           +P  +NP       + V +  SH         L+QSD   + +L  HL    +  ++L+ 
Sbjct: 41  IPHRRNPEPKGQDLDFVNVAHSH---------LIQSDWDKLNKLSDHLDSFRVKNVLLKI 100

Query: 115 QSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASG 174
           Q +++  L FFNW K     + + + + +++H L  +R+F  A   L ++  L       
Sbjct: 101 QKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDV--LVNGGVDL 160

Query: 175 SEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCI 230
              VF  L+     C+  P +F+ L K +  +   + + ++F +M   GF+P+V +CN  
Sbjct: 161 PAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAY 213

[Close]

BLAST of Carg04455 vs. TAIR10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-10
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 113 LAFFNWVKFDLGITLNS--QNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVF 172
           L F  WV    G+  +   Q  C+  HIL  +R +  A   L EL  +S      S  VF
Sbjct: 94  LKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMS----GKSSFVF 153

Query: 173 HNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
             L+     CN NP ++++LI+ Y++  MIQ+S E F+ M   GF PSV  CN IL  +
Sbjct: 154 GALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSV 208

[Close]

BLAST of Carg04455 vs. TAIR10
Match: AT5G01110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-07
Identity = 40/167 (23.95%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 64  IVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDL 123
           +VE +   LK  N       ++++  L  L    + +++ RC+++      F + + F  
Sbjct: 54  LVEKICFSLKQGN-------NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHF 113

Query: 124 -GITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNW 183
                 S +   +IHIL  S + S A   L  +I  S        ++ ++L     +C  
Sbjct: 114 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRS---GVSRLEIVNSLDSTFSNCGS 173

Query: 184 NPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           N  +F++LI+ YV+   ++E++E+F  +   GF  S+ ACN ++  L
Sbjct: 174 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSL 210

[Close]

BLAST of Carg04455 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05
Identity = 32/130 (24.62%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 98  ISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIE 157
           + ++++  + +      FF W     G   + ++YC++ HIL  +R +  A   L E++ 
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMV- 170

Query: 158 LSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVP 217
           LSK +     DVF  L      C     +F+ L    + + M++E+ + F KM +    P
Sbjct: 171 LSKADC----DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFP 230

Query: 218 SVIACNCILN 228
              +CN +L+
Sbjct: 231 KTRSCNGLLH 235

[Close]

BLAST of Carg04455 vs. Swiss-Prot
Match: sp|Q9FND8|PP409_ARATH (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX=3702 GN=At5g40400 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-40
Identity = 90/198 (45.45%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 27  FSSASSSTFLPSIPRSET--KLTVNPLYHFLPQNQNPFNIVELVSSHLKTSNTQLSL--L 86
           FSS SSS     +PR     K  +NPLY+ LPQ+QNP  IV+++ S L  S+  + L  L
Sbjct: 11  FSSYSSSI----VPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNL 70

Query: 87  QSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWS 146
           + ++K L+PHLG+ EIS+++LR QS+    + FF WVKFDLG   N  NYCL++HIL  S
Sbjct: 71  RDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSS 130

Query: 147 RQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQE 206
           ++F +AM+FL ELIEL+  +     DVF  LV  T+ CNW+PV+F+ML+K Y+K+ +++E
Sbjct: 131 KKFPLAMQFLCELIELT--SKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEE 190

Query: 207 SYESFKKMVKMGFVPSVI 221
            +  F++++  GF  SV+
Sbjct: 191 GFRVFREVLDSGFSVSVV 202

[Close]

BLAST of Carg04455 vs. Swiss-Prot
Match: sp|Q9SZ10|PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26680 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-10
Identity = 45/184 (24.46%), Postives = 86/184 (46.74%), Query Frame = 0


Query: 55  LPQNQNP------FNIVELVSSHLKTSNTQLSLLQSD---IKELLPHLGHREISKIILRC 114
           +P  +NP       + V +  SH         L+QSD   + +L  HL    +  ++L+ 
Sbjct: 41  IPHRRNPEPKGQDLDFVNVAHSH---------LIQSDWDKLNKLSDHLDSFRVKNVLLKI 100

Query: 115 QSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASG 174
           Q +++  L FFNW K     + + + + +++H L  +R+F  A   L ++  L       
Sbjct: 101 QKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDV--LVNGGVDL 160

Query: 175 SEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCI 230
              VF  L+     C+  P +F+ L K +  +   + + ++F +M   GF+P+V +CN  
Sbjct: 161 PAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAY 213

[Close]

BLAST of Carg04455 vs. Swiss-Prot
Match: sp|Q9LVQ5|PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-09
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 113 LAFFNWVKFDLGITLNS--QNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVF 172
           L F  WV    G+  +   Q  C+  HIL  +R +  A   L EL  +S      S  VF
Sbjct: 54  LKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMS----GKSSFVF 113

Query: 173 HNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
             L+     CN NP ++++LI+ Y++  MIQ+S E F+ M   GF PSV  CN IL  +
Sbjct: 114 GALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSV 168

[Close]

BLAST of Carg04455 vs. Swiss-Prot
Match: sp|Q9LFC5|PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-06
Identity = 40/167 (23.95%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 64  IVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDL 123
           +VE +   LK  N       ++++  L  L    + +++ RC+++      F + + F  
Sbjct: 54  LVEKICFSLKQGN-------NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHF 113

Query: 124 -GITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNW 183
                 S +   +IHIL  S + S A   L  +I  S        ++ ++L     +C  
Sbjct: 114 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRS---GVSRLEIVNSLDSTFSNCGS 173

Query: 184 NPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           N  +F++LI+ YV+   ++E++E+F  +   GF  S+ ACN ++  L
Sbjct: 174 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSL 210

[Close]

BLAST of Carg04455 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-04
Identity = 32/130 (24.62%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 98  ISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIE 157
           + ++++  + +      FF W     G   + ++YC++ HIL  +R +  A   L E++ 
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMV- 170

Query: 158 LSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVP 217
           LSK +     DVF  L      C     +F+ L    + + M++E+ + F KM +    P
Sbjct: 171 LSKADC----DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFP 230

Query: 218 SVIACNCILN 228
              +CN +L+
Sbjct: 231 KTRSCNGLLH 235

[Close]

BLAST of Carg04455 vs. TrEMBL
Match: tr|A0A1S3C995|A0A1S3C995_CUCME (pentatricopeptide repeat-containing protein At5g40400 OS=Cucumis melo OX=3656 GN=LOC103498097 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.6e-90
Identity = 176/229 (76.86%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQN 60
           M R  ASNL KLS+ F FL+S  KS  S    STFL SIP SE K  VNPLYHFLPQNQN
Sbjct: 1   MLRTTASNLPKLSQSFFFLSSFSKSTLSXXXXSTFLQSIPESEAKSIVNPLYHFLPQNQN 60

Query: 61  PFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVK 120
           PFNIVELVS HLKT+N +L+LLQ++IK L+P+LGH +ISKI+LRCQSNFVS LAFFNWVK
Sbjct: 61  PFNIVELVSLHLKTNNPRLALLQANIKGLIPYLGHCQISKILLRCQSNFVSALAFFNWVK 120

Query: 121 FDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHC 180
           +DL I LNS NYCLIIHILAWSRQF +AMK LSELIELSKD  S SEDVF NLVLCTEHC
Sbjct: 121 YDLDIRLNSHNYCLIIHILAWSRQFPLAMKLLSELIELSKD-VSSSEDVFQNLVLCTEHC 180

Query: 181 NWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           NWNPVIFEMLIKAYVK+ +I ESY SFKKMVK+GFVPSVIACNCIL+GL
Sbjct: 181 NWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPSVIACNCILHGL 228

[Close]

BLAST of Carg04455 vs. TrEMBL
Match: tr|A0A0A0KSF1|A0A0A0KSF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523120 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 174/236 (73.73%), Postives = 189/236 (80.08%), Query Frame = 0


Query: 1   MHRIPASNLTKLSKPFVFLAS-------IPKSNFSSASSSTFLPSIPRSETKLTVNPLYH 60
           M R  ASNL KL++ F F  S                     L SIP SE KL VNPLYH
Sbjct: 1   MLRTTASNLPKLAQSFFFHTSXXXXXXXXXXXXXXXXXXXXXLQSIPESEAKLIVNPLYH 60

Query: 61  FLPQNQNPFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVL 120
           FLPQNQNPFNIVELVSSHLKT+N +L+LLQS IKEL+PHLGHR+ISKI+LRCQSNFVS L
Sbjct: 61  FLPQNQNPFNIVELVSSHLKTNNPRLALLQSHIKELIPHLGHRQISKILLRCQSNFVSAL 120

Query: 121 AFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNL 180
           AFFNWVK+DL I L+S NYCLIIHILAWSRQF +AMKFLSELIELSKD  S SEDVF NL
Sbjct: 121 AFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIELSKD-VSSSEDVFQNL 180

Query: 181 VLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           VLCTEHCNWNPVIFEMLIKAYVK+ +I ESY SFKKMVK+GFVP+VIACNCILNGL
Sbjct: 181 VLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGL 235

[Close]

BLAST of Carg04455 vs. TrEMBL
Match: tr|A0A067LPH7|A0A067LPH7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10269 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 130/217 (59.91%), Postives = 166/217 (76.50%), Query Frame = 0


Query: 13  SKPFVFLASIPKSNFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQNPFNIVELVSSHL 72
           SKPF++   IP+S +S +SS   + S P S  K   NPLYH LP+ QNP NIV ++ S L
Sbjct: 23  SKPFLY-HFIPQSPYSFSSSDLDIISNPSS--KSLSNPLYHLLPRTQNPNNIVNIIYSFL 82

Query: 73  KTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNY 132
           K  NTQL++LQ+DIK LL HLG  EIS+++LRCQS+ +S LAFFNWVK DL I  ++ NY
Sbjct: 83  KQDNTQLAILQNDIKGLLAHLGTNEISRVLLRCQSDSISALAFFNWVKNDLDIKPSTHNY 142

Query: 133 CLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIK 192
           CL++HILA SR+F  AMKFL+ELI L KD AS SEDVF +LVLC E CNW+PVIF+MLIK
Sbjct: 143 CLLVHILACSREFKQAMKFLTELIRLVKDCAS-SEDVFQSLVLCCEDCNWDPVIFDMLIK 202

Query: 193 AYVKVHMIQESYESFKKMVKMGFVPSVIACNCILNGL 230
           AYVK  +I+E + +F K+V++G+VPSV+ACN +LNGL
Sbjct: 203 AYVKEGLIKEGFSTFMKIVEVGYVPSVVACNSVLNGL 235

[Close]

BLAST of Carg04455 vs. TrEMBL
Match: tr|A0A2P5AYG8|A0A2P5AYG8_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_288570 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 119/192 (61.98%), Postives = 147/192 (76.56%), Query Frame = 0


Query: 38  SIPRSETKLTVNPLYHFLPQNQNPFNIVELVSSHLKTSNTQLSLLQSDIKELLPHLGHRE 97
           +IP  ++K  +NPLYHFLP  QNP  IV+L+ S L+  N  +SLLQ+ IK LLPHLG  E
Sbjct: 52  TIPDPDSKSGLNPLYHFLPPPQNPTKIVDLICSSLRQENNSISLLQNSIKGLLPHLGSHE 111

Query: 98  ISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQNYCLIIHILAWSRQFSMAMKFLSELIE 157
           IS+++LRCQS++ S L FFNWVK DLGI   SQNYC I+HILAWSR+FS AM  LSELI 
Sbjct: 112 ISRVLLRCQSDYSSALIFFNWVKNDLGINPTSQNYCFILHILAWSRKFSPAMGLLSELIV 171

Query: 158 LSKDNASGSEDVFHNLVLCTEHCNWNPVIFEMLIKAYVKVHMIQESYESFKKMVKMGFVP 217
            +KD  S  ED+F  LVLCTE CNW+PVIF+ML+KAYVK  MI E + +FK MV++GF P
Sbjct: 172 TAKD-VSTEEDIFQTLVLCTEDCNWDPVIFDMLVKAYVKAGMILEGFSAFKNMVEIGFFP 231

Query: 218 SVIACNCILNGL 230
           SV++CNC+LNGL
Sbjct: 232 SVVSCNCLLNGL 242

[Close]

BLAST of Carg04455 vs. TrEMBL
Match: tr|A0A2I4GEQ0|A0A2I4GEQ0_9ROSI (pentatricopeptide repeat-containing protein At5g40400 OS=Juglans regia OX=51240 GN=LOC109007240 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 122/213 (57.28%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 13  SKPFVFLASIPKS--NFSSASSSTFLPSIPRSETKLTVNPLYHFLPQNQNPFNIVELVSS 72
           S+PF  +  + +S  +FSS+ SS+FL ++P SE+K    PLY FLPQ +NP N+V L+  
Sbjct: 27  SRPFATINFVFQSTCSFSSSCSSSFLQTLPDSESKSISKPLYQFLPQTRNPNNLVNLICL 86

Query: 73  HLKTSNTQLSLLQSDIKELLPHLGHREISKIILRCQSNFVSVLAFFNWVKFDLGITLNSQ 132
           +LK  NT L+LLQ+DIK LLPHLG  EIS+++LRCQS+  S L FFNWVK DLG+   +Q
Sbjct: 87  NLKQENTHLALLQNDIKGLLPHLGAHEISRVLLRCQSDLSSALTFFNWVKSDLGLKPTTQ 146

Query: 133 NYCLIIHILAWSRQFSMAMKFLSELIELSKDNASGSEDVFHNLVLCTEHCNWNPVIFEML 192
           NYC+I+HIL WSRQ   AMKFLSELIE+++D  S  +DVF +L+L +E CNW+P++F+ML
Sbjct: 147 NYCIIVHILVWSRQLPQAMKFLSELIEIARD-VSPKDDVFESLILYSEDCNWDPLVFDML 206

Query: 193 IKAYVKVHMIQESYESFKKMVKMGFVPSVIACN 224
           IKAYVK +MIQE + +F + V++GFVPSVIACN
Sbjct: 207 IKAYVKGNMIQEGFRTFSRTVEVGFVPSVIACN 238

The following BLAST results are available for this feature:

BLAST of Carg04455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922085.1	3.6e-126	98.74	pentatricopeptide repeat-containing protein At5g40400 [Cucurbita moschata]	[more]
XP_023535833.1	1.4e-125	98.74	pentatricopeptide repeat-containing protein At5g40400 [Cucurbita pepo subsp. pep...	[more]
XP_022991028.1	4.4e-124	98.58	pentatricopeptide repeat-containing protein At5g40400 [Cucurbita maxima]	[more]
XP_022134396.1	3.8e-91	75.98	pentatricopeptide repeat-containing protein At5g40400 [Momordica charantia] >XP_...	[more]
XP_008458797.1	2.5e-90	76.86	PREDICTED: pentatricopeptide repeat-containing protein At5g40400 [Cucumis melo]	[more]

BLAST of Carg04455 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40400.1	2.0e-41	45.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G26680.1	9.5e-12	24.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55840.1	1.1e-10	36.13	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G01110.1	2.4e-07	23.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02150.1	1.0e-05	24.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg04455 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FND8\|PP409_ARATH	3.5e-40	45.45	Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SZ10\|PP338_ARATH	1.7e-10	24.46	Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidop...	[more]
sp\|Q9LVQ5\|PP432_ARATH	1.9e-09	36.13	Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LFC5\|PP360_ARATH	4.4e-06	23.95	Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C894\|PP143_ARATH	1.8e-04	24.62	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]

BLAST of Carg04455 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C995\|A0A1S3C995_CUCME	1.6e-90	76.86	pentatricopeptide repeat-containing protein At5g40400 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KSF1\|A0A0A0KSF1_CUCSA	3.8e-87	73.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523120 PE=4 SV=1	[more]
tr\|A0A067LPH7\|A0A067LPH7_JATCU	2.1e-61	59.91	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10269 PE=4 SV=1	[more]
tr\|A0A2P5AYG8\|A0A2P5AYG8_PARAD	2.1e-61	61.98	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_288570 P...	[more]
tr\|A0A2I4GEQ0\|A0A2I4GEQ0_9ROSI	3.5e-61	57.28	pentatricopeptide repeat-containing protein At5g40400 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04455-RA	Carg04455-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 187..215 e-value: 0.075 score: 13.2 coord: 539..557 e-value: 0.0042 score: 17.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 290..323 e-value: 1.3E-10 score: 38.8 coord: 255..289 e-value: 2.3E-6 score: 25.4 coord: 185..219 e-value: 8.5E-4 score: 17.3 coord: 325..359 e-value: 2.2E-10 score: 38.0 coord: 466..498 e-value: 2.2E-5 score: 22.3 coord: 360..393 e-value: 1.2E-9 score: 35.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 357..404 e-value: 1.8E-15 score: 56.7 coord: 462..510 e-value: 1.3E-8 score: 34.8 coord: 217..266 e-value: 3.4E-9 score: 36.6 coord: 287..336 e-value: 3.8E-19 score: 68.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 128..158 score: 5.952
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 323..357 score: 13.439
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 463..497 score: 9.876
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 13.987
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 183..217 score: 10.501
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 428..462 score: 7.837
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 533..563 score: 7.267
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 498..532 score: 8.528
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 568..602 score: 8.561
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..322 score: 14.491
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 253..287 score: 11.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 218..252 score: 8.188
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 393..427 score: 8.451
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 443..585 e-value: 2.4E-24 score: 88.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 71..233 e-value: 2.3E-15 score: 58.4 coord: 338..442 e-value: 2.7E-26 score: 94.0 coord: 234..337 e-value: 9.4E-32 score: 111.8
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 18..613
None	No IPR available	PANTHER	PTHR24015:SF657	SUBFAMILY NOT NAMED	coord: 18..613
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 194..389

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04455	Cla010427	Watermelon (97103) v1	carwmB0679
Carg04455	Csa5G523120	Cucumber (Chinese Long) v2	carcuB0707
Carg04455	MELO3C021571	Melon (DHL92) v3.5.1	carmeB0682
Carg04455	ClCG09G019220	Watermelon (Charleston Gray)	carwcgB0657
Carg04455	CSPI05G18260	Wild cucumber (PI 183967)	carcpiB0721
Carg04455	Cucsa.011320	Cucumber (Gy14) v1	carcgyB0766
Carg04455	CmaCh04G026880	Cucurbita maxima (Rimu)	carcmaB0967
Carg04455	CmoCh04G028180	Cucurbita moschata (Rifu)	carcmoB0940
Carg04455	Lsi02G015850	Bottle gourd (USVL1VR-Ls)	carlsiB623
Carg04455	Cp4.1LG01g23300	Cucurbita pepo (Zucchini)	carcpeB0965
Carg04455	CsGy5G017900	Cucumber (Gy14) v2	carcgybB0685
Carg04455	CsaV3_5G027190	Cucumber (Chinese Long) v3	carcucB0724
Carg04455	Cla97C09G180670	Watermelon (97103) v2	carwmbB0714
Carg04455	Bhi06G000461	Wax gourd	carwgoB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04455	Silver-seed gourd	carcarB306
Carg04455	Silver-seed gourd	carcarB393
Carg04455	Silver-seed gourd	carcarB398
Carg04455	Silver-seed gourd	carcarB444
Carg04455	Cucumber (Gy14) v2	carcgybB0683
Carg04455	Cucumber (Gy14) v1	carcgyB0770
Carg04455	Cucurbita maxima (Rimu)	carcmaB0958
Carg04455	Cucurbita maxima (Rimu)	carcmaB0960
Carg04455	Cucurbita maxima (Rimu)	carcmaB0961
Carg04455	Cucurbita moschata (Rifu)	carcmoB0934
Carg04455	Cucurbita moschata (Rifu)	carcmoB0935
Carg04455	Cucurbita moschata (Rifu)	carcmoB0936
Carg04455	Cucurbita pepo (Zucchini)	carcpeB0962
Carg04455	Cucurbita pepo (Zucchini)	carcpeB0967
Carg04455	Cucurbita pepo (Zucchini)	carcpeB0969
Carg04455	Wild cucumber (PI 183967)	carcpiB0719
Carg04455	Cucumber (Chinese Long) v2	carcuB0705
Carg04455	Cucumber (Chinese Long) v3	carcucB0722
Carg04455	Bottle gourd (USVL1VR-Ls)	carlsiB626
Carg04455	Melon (DHL92) v3.5.1	carmeB0687
Carg04455	Melon (DHL92) v3.6.1	carmedB0700
Carg04455	Melon (DHL92) v3.6.1	carmedB0694
Carg04455	Watermelon (Charleston Gray)	carwcgB0659
Carg04455	Watermelon (97103) v1	carwmB0681
Carg04455	Watermelon (97103) v2	carwmbB0708
Carg04455	Wax gourd	carwgoB0800