Carg04439 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04439
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chromo domain-containing protein isoform 1
Location	Cucurbita_argyrosperma_scaffold_032 : 457184 .. 457678 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

mRNA sequence

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

Coding sequence (CDS)

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

Protein sequence

MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

Homology

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_022962836.1 (uncharacterized protein LOC111463206 [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXX 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXX
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXX 120

Query: 121 XXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           XXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 XXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 164

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_022989907.1 (uncharacterized protein LOC111486958 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 4.7e-78
Identity = 160/169 (94.67%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSV-----E 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG AREEGLPEIVPGSV      
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETGLGPAREEGLPEIVPGSVXXXXXX 120

Query: 121 XXXXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           XXXXXXX VGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 XXXXXXXXVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 169

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_023536558.1 (uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 8.9e-77
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXX 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG AREE LPEI+PGS  XXXXX
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETGLGPAREEELPEIMPGS-XXXXXX 120

Query: 121 XXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           XX VGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 XXXVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 163

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_008458773.1 (PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 132/167 (79.04%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXX 120
           KLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET   +  E+GLPEI PGS E  
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAA-ETGGCVGNEKGLPEISPGSGEED 120

Query: 121 XXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
                  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 ET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: KGN51384.1 (hypothetical protein Csa_5G524770 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 130/167 (77.84%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 86  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 145

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXX 120
           KLPWM+GRRCLQ+A   RKKRKL+ R+ ECDGA AA ET   +  E+GLPE+ PGS E  
Sbjct: 146 KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETGGCVGNEKGLPEVSPGSGEED 205

Query: 121 XXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
                  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 206 ET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 247

[Close]

BLAST of Carg04439 vs. TAIR10
Match: AT3G01516.1 (unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 63/161 (39.13%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 25  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRK 84
           CSGK CRS  A  +ADCVA+CCCPC+VV+   LA VK+PWMIGR+C+ R    +K     
Sbjct: 33  CSGKRCRSWAAAAIADCVALCCCPCAVVNIFTLAFVKVPWMIGRKCIGRGGPSKKXXXXX 92

Query: 85  R------------------------------ECDGAAAASETALGLAREEGLPEIVPGSV 144
                                          E D      E    L +EE     +    
Sbjct: 93  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEFDDHRFVVERDGSLTKEEAKTASLKEEE 152

Query: 145 EXXXXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTG 156
           E            SAR EAER+WL+LYQ+G LGFGRVSFTG
Sbjct: 153 ET---------RISARVEAERVWLELYQIGHLGFGRVSFTG 184

[Close]

BLAST of Carg04439 vs. TAIR10
Match: AT5G14690.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-05
Identity = 51/175 (29.14%), Postives = 59/175 (33.71%), Query Frame = 0


Query: 23  IDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIR 82
           + CS K CRS  A               +++ L L LVK+PWMIGRRCL           
Sbjct: 41  VKCSSKRCRSWAAAXXXXXXXXXXXXXXIINLLTLTLVKVPWMIGRRCLXXXXXXXXXXX 100

Query: 83  RKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXXXXGV------------------ 142
                                            XXXXXXX                    
Sbjct: 101 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 160

Query: 143 ------------------------GNFSARFEAERIWLQLYQLGQLGFGRVSFTG 156
                                      SAR EAER+WL+LYQ+G LGFGRVSFTG
Sbjct: 161 XXXXXXXXXXXXXXXXCKGEDHDESRISARVEAERVWLELYQIGHLGFGRVSFTG 215

[Close]

BLAST of Carg04439 vs. TrEMBL
Match: tr|A0A1S3C8M3|A0A1S3C8M3_CUCME (uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 7.5e-64
Identity = 132/167 (79.04%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXX 120
           KLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET   +  E+GLPEI PGS E  
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAA-ETGGCVGNEKGLPEISPGSGEED 120

Query: 121 XXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
                  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 ET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. TrEMBL
Match: tr|A0A0A0KR58|A0A0A0KR58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 6.3e-63
Identity = 130/167 (77.84%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 86  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 145

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXX 120
           KLPWM+GRRCLQ+A   RKKRKL+ R+ ECDGA AA ET   +  E+GLPE+ PGS E  
Sbjct: 146 KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETGGCVGNEKGLPEVSPGSGEED 205

Query: 121 XXXXXGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
                  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 206 ET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 247

[Close]

BLAST of Carg04439 vs. TrEMBL
Match: tr|A0A2R6P9A1|A0A2R6P9A1_ACTCH (Chromo domain-containing protein isoform 2 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30621 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 83/145 (57.24%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 15  PVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA 74
           P DD  D I+CSGKHCRSCTAGL+ADCVAVCCCPC+VVS  ALA +K PWM+GRRCL   
Sbjct: 44  PADDSGDPIECSGKHCRSCTAGLIADCVAVCCCPCAVVSCFALAFLKAPWMMGRRCLGIG 103

Query: 75  RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXXXXGVGNFSARFEAE 134
           +KKR+ +  +REC+      +T   L   +G+ EI  G            GN SARFEAE
Sbjct: 104 KKKRRRLENERECE------KTGSDLVDMDGISEIGTGL----------EGNLSARFEAE 163

Query: 135 RIWLQLYQLGQLGFGRVSFTGNSNQ 160
           R+WL+LYQ+G LGFGRVSFTG  +Q
Sbjct: 164 RVWLELYQVGHLGFGRVSFTGIPSQ 172

[Close]

BLAST of Carg04439 vs. TrEMBL
Match: tr|A0A2R6P982|A0A2R6P982_ACTCH (Chromo domain-containing protein isoform 1 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30621 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 83/145 (57.24%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 15  PVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA 74
           P DD  D I+CSGKHCRSCTAGL+ADCVAVCCCPC+VVS  ALA +K PWM+GRRCL   
Sbjct: 44  PADDSGDPIECSGKHCRSCTAGLIADCVAVCCCPCAVVSCFALAFLKAPWMMGRRCLGIG 103

Query: 75  RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEXXXXXXXGVGNFSARFEAE 134
           +KKR+ +  +REC+      +T   L   +G+ EI  G            GN SARFEAE
Sbjct: 104 KKKRRRLENERECE------KTGSDLVDMDGISEIGTGL----------EGNLSARFEAE 163

Query: 135 RIWLQLYQLGQLGFGRVSFTGNSNQ 160
           R+WL+LYQ+G LGFGRVSFTG  +Q
Sbjct: 164 RVWLELYQVGHLGFGRVSFTGIPSQ 172

[Close]

BLAST of Carg04439 vs. TrEMBL
Match: tr|A0A2I4EUD8|A0A2I4EUD8_9ROSI (uncharacterized protein LOC108992819 OS=Juglans regia OX=51240 GN=LOC108992819 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 86/153 (56.21%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 8   PTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIG 67
           PTR+ R+  DD  D I CSGKHCR+CTAGLVADCVA+CCCP +VV FLALALVK+PWM+G
Sbjct: 23  PTRKGRYTTDDDGDQIKCSGKHCRACTAGLVADCVALCCCPFAVVEFLALALVKVPWMVG 82

Query: 68  RRCLQRARKKRKLIRRKREC-----DGAAAASETALGLAREEGLPEIVPGSVEXXXXXXX 127
           RRCL   RKK +    KR+C     D               EG+PEI  G  E       
Sbjct: 83  RRCLGLGRKKGQRPEMKRKCKRSEGDCVVERDGNVRKRREVEGMPEIASGFDEEER---- 142

Query: 128 GVGNFSARFEAERIWLQLYQLGQLGFGRVSFTG 156
            + + SARFEAER+WL+LYQ+G LGFGRVSFTG
Sbjct: 143 -MDSGSARFEAERVWLELYQVGHLGFGRVSFTG 170

The following BLAST results are available for this feature:

BLAST of Carg04439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962836.1	1.1e-82	100.00	uncharacterized protein LOC111463206 [Cucurbita moschata]	[more]
XP_022989907.1	4.7e-78	94.67	uncharacterized protein LOC111486958 [Cucurbita maxima]	[more]
XP_023536558.1	8.9e-77	95.73	uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]	[more]
XP_008458773.1	1.1e-63	79.04	PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 P...	[more]
KGN51384.1	9.6e-63	77.84	hypothetical protein Csa_5G524770 [Cucumis sativus]	[more]

BLAST of Carg04439 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01516.1	1.0e-21	39.13	unknown protein	[more]
AT5G14690.1	1.7e-05	29.14	unknown protein	[more]

BLAST of Carg04439 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04439 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8M3\|A0A1S3C8M3_CUCME	7.5e-64	79.04	uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=...	[more]
tr\|A0A0A0KR58\|A0A0A0KR58_CUCSA	6.3e-63	77.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1	[more]
tr\|A0A2R6P9A1\|A0A2R6P9A1_ACTCH	3.9e-36	57.24	Chromo domain-containing protein isoform 2 OS=Actinidia chinensis var. chinensis...	[more]
tr\|A0A2R6P982\|A0A2R6P982_ACTCH	3.9e-36	57.24	Chromo domain-containing protein isoform 1 OS=Actinidia chinensis var. chinensis...	[more]
tr\|A0A2I4EUD8\|A0A2I4EUD8_9ROSI	1.1e-35	56.21	uncharacterized protein LOC108992819 OS=Juglans regia OX=51240 GN=LOC108992819 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04439-RA	Carg04439-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33264	FAMILY NOT NAMED	coord: 19..154
None	No IPR available	PANTHER	PTHR33264:SF6	SUBFAMILY NOT NAMED	coord: 19..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04439	Cla010409	Watermelon (97103) v1	carwmB0679
Carg04439	Csa5G524770	Cucumber (Chinese Long) v2	carcuB0707
Carg04439	MELO3C021551	Melon (DHL92) v3.5.1	carmeB0682
Carg04439	ClCG09G019030	Watermelon (Charleston Gray)	carwcgB0657
Carg04439	CSPI05G18420	Wild cucumber (PI 183967)	carcpiB0721
Carg04439	Cucsa.011480	Cucumber (Gy14) v1	carcgyB0766
Carg04439	CmaCh04G027030	Cucurbita maxima (Rimu)	carcmaB0967
Carg04439	CmoCh04G028330	Cucurbita moschata (Rifu)	carcmoB0940
Carg04439	CmoCh15G003530	Cucurbita moschata (Rifu)	carcmoB0936
Carg04439	Cp4.1LG01g23350	Cucurbita pepo (Zucchini)	carcpeB0965
Carg04439	CsGy5G018060	Cucumber (Gy14) v2	carcgybB0685
Carg04439	MELO3C021551.2	Melon (DHL92) v3.6.1	carmedB0694
Carg04439	Cla97C09G180500	Watermelon (97103) v2	carwmbB0714
Carg04439	Bhi06G000436	Wax gourd	carwgoB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04439	Silver-seed gourd	carcarB306
Carg04439	Silver-seed gourd	carcarB393
Carg04439	Silver-seed gourd	carcarB398
Carg04439	Silver-seed gourd	carcarB444
Carg04439	Cucumber (Gy14) v2	carcgybB0683
Carg04439	Cucumber (Gy14) v1	carcgyB0770
Carg04439	Cucurbita maxima (Rimu)	carcmaB0958
Carg04439	Cucurbita maxima (Rimu)	carcmaB0960
Carg04439	Cucurbita maxima (Rimu)	carcmaB0961
Carg04439	Cucurbita moschata (Rifu)	carcmoB0934
Carg04439	Cucurbita moschata (Rifu)	carcmoB0935
Carg04439	Cucurbita pepo (Zucchini)	carcpeB0962
Carg04439	Cucurbita pepo (Zucchini)	carcpeB0967
Carg04439	Cucurbita pepo (Zucchini)	carcpeB0969
Carg04439	Wild cucumber (PI 183967)	carcpiB0719
Carg04439	Cucumber (Chinese Long) v2	carcuB0705
Carg04439	Cucumber (Chinese Long) v3	carcucB0722
Carg04439	Cucumber (Chinese Long) v3	carcucB0724
Carg04439	Bottle gourd (USVL1VR-Ls)	carlsiB623
Carg04439	Bottle gourd (USVL1VR-Ls)	carlsiB626
Carg04439	Melon (DHL92) v3.5.1	carmeB0687
Carg04439	Melon (DHL92) v3.6.1	carmedB0700
Carg04439	Watermelon (Charleston Gray)	carwcgB0659
Carg04439	Watermelon (97103) v1	carwmB0681
Carg04439	Watermelon (97103) v2	carwmbB0708
Carg04439	Wax gourd	carwgoB0800