Carg04213 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04213
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Sterile alpha motif domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_044 : 859547 .. 860119 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGTTCTCATGGCTTTCAAAAACGACCCTAGATCCTTCTCTCGTCTATGAATATGGCCTCGCCTTATCCCACAATGAGCTCGAACAGGAAGACATCGTTTATTTCAACCACGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGTCTCGAGATCCTCAAGCTAGCTCGCAAGGACGGCGCTCTCCATCCTCGCCCGATCACTCGTCTCCTTCTCGCAATCAAGAGAACCAAGCGCTGTTTCGCCAAGTTGATTCGCAATTTCTCTGTCCATGATGGAGACGACAGCAAAGCCCTAGTCGTCGTCCCTAAATCGACCTATTCTGGGAAATTGCTGAAGAGGAATAAGAAATTGATGGTCGCGAAACAGCAAGGGAGGTTTCTACTCACTAATGGAAGTCCAGCGCCAGGTGTGTGGCCGCGAATCGAGAGCTTCTCCGGTCCGCTTGTGTACGATCTTCGCCGGGATGAGAAAAAGGAGGAGGAGGAGGATGGTTACTGGAGCAATGGCGTTGAGGAGATCAGGTGGGATACGATGTTTCAGAATTTGAAACCTACCTAA

mRNA sequence

ATGGATTGGTTCTCATGGCTTTCAAAAACGACCCTAGATCCTTCTCTCGTCTATGAATATGGCCTCGCCTTATCCCACAATGAGCTCGAACAGGAAGACATCGTTTATTTCAACCACGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGTCTCGAGATCCTCAAGCTAGCTCGCAAGGACGGCGCTCTCCATCCTCGCCCGATCACTCGTCTCCTTCTCGCAATCAAGAGAACCAAGCGCTGTTTCGCCAAGTTGATTCGCAATTTCTCTGTCCATGATGGAGACGACAGCAAAGCCCTAGTCGTCGTCCCTAAATCGACCTATTCTGGGAAATTGCTGAAGAGGAATAAGAAATTGATGGTCGCGAAACAGCAAGGGAGGTTTCTACTCACTAATGGAAGTCCAGCGCCAGGTGTGTGGCCGCGAATCGAGAGCTTCTCCGGTCCGCTTGTGTACGATCTTCGCCGGGATGAGAAAAAGGAGGAGGAGGAGGATGGTTACTGGAGCAATGGCGTTGAGGAGATCAGGTGGGATACGATGTTTCAGAATTTGAAACCTACCTAA

Coding sequence (CDS)

ATGGATTGGTTCTCATGGCTTTCAAAAACGACCCTAGATCCTTCTCTCGTCTATGAATATGGCCTCGCCTTATCCCACAATGAGCTCGAACAGGAAGACATCGTTTATTTCAACCACGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGTCTCGAGATCCTCAAGCTAGCTCGCAAGGACGGCGCTCTCCATCCTCGCCCGATCACTCGTCTCCTTCTCGCAATCAAGAGAACCAAGCGCTGTTTCGCCAAGTTGATTCGCAATTTCTCTGTCCATGATGGAGACGACAGCAAAGCCCTAGTCGTCGTCCCTAAATCGACCTATTCTGGGAAATTGCTGAAGAGGAATAAGAAATTGATGGTCGCGAAACAGCAAGGGAGGTTTCTACTCACTAATGGAAGTCCAGCGCCAGGTGTGTGGCCGCGAATCGAGAGCTTCTCCGGTCCGCTTGTGTACGATCTTCGCCGGGATGAGAAAAAGGAGGAGGAGGAGGATGGTTACTGGAGCAATGGCGTTGAGGAGATCAGGTGGGATACGATGTTTCAGAATTTGAAACCTACCTAA

Protein sequence

MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNKKLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEEIRWDTMFQNLKPT

Homology

[Close]

BLAST of Carg04213 vs. NCBI nr
Match: XP_023525324.1 (uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.4 bits (999), Expect = 6.9e-105
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120
           RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120

Query: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEEIRW 180
           KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEEIRW
Sbjct: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEEIRW 180

Query: 181 DTMFQNLKPT 191
           DTMFQNLKPT
Sbjct: 181 DTMFQNLKPT 190

[Close]

BLAST of Carg04213 vs. NCBI nr
Match: XP_022948497.1 (uncharacterized protein LOC111452156 [Cucurbita moschata])

HSP 1 Score: 386.0 bits (990), Expect = 7.6e-104
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120
           RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120

Query: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEEIRW 180
           KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDG WSNGVEEIRW
Sbjct: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGCWSNGVEEIRW 180

Query: 181 DTMFQNLKPT 191
           DTMFQNLKPT
Sbjct: 181 DTMFQNLKPT 190

[Close]

BLAST of Carg04213 vs. NCBI nr
Match: XP_022998747.1 (uncharacterized protein LOC111493318 [Cucurbita maxima])

HSP 1 Score: 365.9 bits (938), Expect = 8.2e-98
Identity = 182/191 (95.29%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120
           RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK
Sbjct: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYSGKLLKRNK 120

Query: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRD-EKKEEEEDGYWSNGVEEIR 180
           KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRD         GYWSNGVEEIR
Sbjct: 121 KLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDXXXXXXXXXGYWSNGVEEIR 180

Query: 181 WDTMFQNLKPT 191
           WDTMFQNLKPT
Sbjct: 181 WDTMFQNLKPT 191

[Close]

BLAST of Carg04213 vs. NCBI nr
Match: XP_022153409.1 (uncharacterized protein LOC111020921 [Momordica charantia])

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 155/193 (80.31%), Postives = 167/193 (86.53%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 32  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 91

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFS--VHDGDDSKALVVVPKSTYSGKLLKR 120
           RK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      DDSKALVVVPKSTY+GKLLKR
Sbjct: 92  RKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPKSTYAGKLLKR 151

Query: 121 NKKLMVAKQQGRFLLTNG-SPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVEE 180
           NKKL+     G  LLTNG SPAP   PR +SFSGP+VY+LRR    EEEEDGYW NGVEE
Sbjct: 152 NKKLIXXXXXGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR----EEEEDGYWGNGVEE 211

Query: 181 IRWDTMFQNLKPT 191
           IRWDTMFQNLKPT
Sbjct: 212 IRWDTMFQNLKPT 219

[Close]

BLAST of Carg04213 vs. NCBI nr
Match: PON90040.1 (Sterile alpha motif/pointed domain containing protein [Trema orientalis])

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 142/203 (69.95%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKT L+PSLVYEYGLA +HNELE+EDI+YFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKD-----GALHP-RPITRLLLAIKRTKRCFAKLIRNFSVH-DGDDSKALVVVPKSTYS- 120
           RK+     G L P RP+TRLL+AIKRTK+C AK IR  S   + ++S AL+VVP+ +Y  
Sbjct: 61  RKEMKSGGGVLGPVRPMTRLLVAIKRTKKCLAKYIRMLSPRINREESSALMVVPRPSYGA 120

Query: 121 ---GKLLKRNKKLMVAKQQGRFLLTNGSP-APGVWPRIESFSGPLVYDLRRDEKKEE-EE 180
              G +LKRNKKLMVAKQ     LTNGSP   G  PR+ESFS P+VYDLR++EK EE +E
Sbjct: 121 RFRGAMLKRNKKLMVAKQSRVLQLTNGSPMVVGFGPRVESFSSPVVYDLRKEEKMEEDDE 180

Query: 181 DGYWSNGVEEIRWDTMFQNLKPT 191
           DGYWSNGVEEIRWDTMFQ+LKPT
Sbjct: 181 DGYWSNGVEEIRWDTMFQDLKPT 203

[Close]

BLAST of Carg04213 vs. TAIR10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-46
Identity = 106/204 (51.96%), Postives = 136/204 (66.67%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLS+T L+ SL+YEYGL+ S+NELE EDI YFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKD---GALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYS---GK 120
           R+D     L  R I R+L+AIK+T +CF++ +R + +   + S+ALVVV +ST S   G+
Sbjct: 61  RRDRKPSPLTARSIFRVLIAIKKTGKCFSEHVRAW-IRREESSRALVVVSRSTSSSGNGR 120

Query: 121 LLKRNKKLMVAKQQG------RFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEED 180
                KK +V    G      R LLTNG+P      R++SFS P V          E++D
Sbjct: 121 WKSARKKRLVMPSNGNGVKEERLLLTNGTPC-----RLDSFSNPKV------SSGYEDDD 180

Query: 181 GYWSNG--VEEIRWDTMFQNLKPT 191
            +W N    E+I+WD+MFQNLKPT
Sbjct: 181 NHWGNKDVEEKIKWDSMFQNLKPT 192

[Close]

BLAST of Carg04213 vs. TAIR10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-46
Identity = 103/207 (49.76%), Postives = 140/207 (67.63%), Query Frame = 0


Query: 3   WFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARK 62
           WFSWLS+T L+PSL++EYGL+ S NELE EDI YF+HEFLQS+GISIAKHRLEILKLAR+
Sbjct: 5   WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 63  DGALHP----RPITRLLLAIKRTKRCFAKLIRNF--SVHDGDDSKALVVVPKST------ 122
           D    P    R I+R++ AIK+T++C +  +R +     +   S+ALV+VPK T      
Sbjct: 65  DRKNSPPLTSRSISRVVTAIKKTRKCLSDHVRAWIRREEESASSRALVLVPKKTSNGIGK 124

Query: 123 YSGKLLKRNKKLMV-------AKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKK 182
           + G  LKRNK+ ++        ++Q R LLTNG+P      RI+SFS P+V+D    ++K
Sbjct: 125 WRGGFLKRNKRSVMPSNGNGGLEKQERLLLTNGTPC-----RIDSFSSPMVFDYSFKDEK 184

Query: 183 EEEEDGYWSNGVEEIRWDTMFQNLKPT 191
              +D Y+    E+I+WD+MFQNLKPT
Sbjct: 185 LYAQDTYF----EDIKWDSMFQNLKPT 202

[Close]

BLAST of Carg04213 vs. TAIR10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1))

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-19
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
          MDWFSWLSKT LDP+L YEYGL  +  +L+ EDI  FNH FL+ +G+++ KHR+EILKL+
Sbjct: 1  MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 61 RKD----GALHPRPITRLLLA--IKRTK 83
          +++     + + RP++  L++  IK TK
Sbjct: 61 KRETQALSSYNHRPVSAKLISVVIKATK 88

[Close]

BLAST of Carg04213 vs. TrEMBL
Match: tr|A0A2P5EWX7|A0A2P5EWX7_9ROSA (Sterile alpha motif/pointed domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_140720 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.4e-68
Identity = 142/203 (69.95%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKT L+PSLVYEYGLA +HNELE+EDI+YFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKD-----GALHP-RPITRLLLAIKRTKRCFAKLIRNFSVH-DGDDSKALVVVPKSTYS- 120
           RK+     G L P RP+TRLL+AIKRTK+C AK IR  S   + ++S AL+VVP+ +Y  
Sbjct: 61  RKEMKSGGGVLGPVRPMTRLLVAIKRTKKCLAKYIRMLSPRINREESSALMVVPRPSYGA 120

Query: 121 ---GKLLKRNKKLMVAKQQGRFLLTNGSP-APGVWPRIESFSGPLVYDLRRDEKKEE-EE 180
              G +LKRNKKLMVAKQ     LTNGSP   G  PR+ESFS P+VYDLR++EK EE +E
Sbjct: 121 RFRGAMLKRNKKLMVAKQSRVLQLTNGSPMVVGFGPRVESFSSPVVYDLRKEEKMEEDDE 180

Query: 181 DGYWSNGVEEIRWDTMFQNLKPT 191
           DGYWSNGVEEIRWDTMFQ+LKPT
Sbjct: 181 DGYWSNGVEEIRWDTMFQDLKPT 203

[Close]

BLAST of Carg04213 vs. TrEMBL
Match: tr|A0A2P5BS85|A0A2P5BS85_PARAD (Sterile alpha motif/pointed domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_214830 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.9e-67
Identity = 140/203 (68.97%), Postives = 163/203 (80.30%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKT L+PSLVYEYGLA +HNELE+EDI+YFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKD-----GALHP-RPITRLLLAIKRTKRCFAKLIRNFSVH-DGDDSKALVVVPKSTYS- 120
           RKD     G L P RP+TRLL+A+KRTK+C AK IR  S   + ++S AL+VV + +Y  
Sbjct: 61  RKDMKSGGGVLGPVRPMTRLLVAVKRTKKCLAKYIRMLSPRINREESSALMVVARPSYGA 120

Query: 121 ---GKLLKRNKKLMVAKQQGRFLLTNGSP-APGVWPRIESFSGPLVYDLRRDEKKEE-EE 180
              G +LKRNKKLMVAKQ     LTNGSP   G  PR+ESFS P+VYDLR++EK EE +E
Sbjct: 121 RFRGAMLKRNKKLMVAKQSRVLQLTNGSPMVVGFGPRVESFSSPVVYDLRKEEKMEEDDE 180

Query: 181 DGYWSNGVEEIRWDTMFQNLKPT 191
           DGYWSNGVE+IRWDTMFQ+LKPT
Sbjct: 181 DGYWSNGVEDIRWDTMFQDLKPT 203

[Close]

BLAST of Carg04213 vs. TrEMBL
Match: tr|A0A2C9UYZ2|A0A2C9UYZ2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061500 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.2e-66
Identity = 132/194 (68.04%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWL+KT L+PSLVYEYGLA SHNELE++DI YFNHEFLQS+GISIAKHRLEILKLA
Sbjct: 1   MDWFSWLAKTGLEPSLVYEYGLAFSHNELEEDDIGYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDGDDSKALVVVPKSTYS----GKLL 120
           RK+    P P+TR+L+AIKRTKRC AK IR +S     +  ALVVVP+  Y+    G +L
Sbjct: 61  RKEKGASPHPMTRVLVAIKRTKRCLAKYIRAWSRR---EESALVVVPRPGYATRWRGAML 120

Query: 121 KRNKKLMVAKQQGRFLLTNGSPAPGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVE 180
           KRNKKLM+A  QGR LLTNGSP     PR++SFS P+VYDL ++ K + ++DGYWS GVE
Sbjct: 121 KRNKKLMLA-NQGRLLLTNGSPVVVSGPRLDSFSSPVVYDLHKEAKMDGDDDGYWSTGVE 180

Query: 181 EIRWDTMFQNLKPT 191
           EIRWDTMFQNLKPT
Sbjct: 181 EIRWDTMFQNLKPT 190

[Close]

BLAST of Carg04213 vs. TrEMBL
Match: tr|A0A1S3BZ95|A0A1S3BZ95_CUCME (uncharacterized protein LOC103494673 OS=Cucumis melo OX=3656 GN=LOC103494673 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.4e-66
Identity = 134/194 (69.07%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLSKT+L PSLVYEYGLAL++NELE EDI+YFNHEFLQSIGISIAKHRLEILKL 
Sbjct: 10  MDWFSWLSKTSLHPSLVYEYGLALANNELEYEDILYFNHEFLQSIGISIAKHRLEILKLV 69

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDG--DDSKALVVVPKSTYSGKLLKR 120
           RK+ ALHPRPITR+LLA+K+TKR FA LIRNF+ HD   ++SKALV+VPKS+Y+ K+LKR
Sbjct: 70  RKENALHPRPITRILLALKKTKRRFANLIRNFTHHDDQLEESKALVLVPKSSYAAKILKR 129

Query: 121 NKKLMVAKQQGRFLLTNGSP--APGVWPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVE 180
           NK   V K QGRFLLTNGSP     +  RI+ FSGP++YD+R               GVE
Sbjct: 130 NKTFSVGKTQGRFLLTNGSPDHDVNIGRRIQHFSGPILYDVR---SSXXXXXXXXXEGVE 189

Query: 181 EIRWDTMFQNLKPT 191
           EIRWD MFQNLKPT
Sbjct: 190 EIRWDAMFQNLKPT 200

[Close]

BLAST of Carg04213 vs. TrEMBL
Match: tr|A0A0A0KVK9|A0A0A0KVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006310 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.1e-65
Identity = 133/194 (68.56%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60
           MDWFSWLS+T+L PSLVYEYGLAL++NELE EDI+YFNHEFLQSIGISIAKHRLEILKL 
Sbjct: 10  MDWFSWLSRTSLHPSLVYEYGLALANNELEHEDILYFNHEFLQSIGISIAKHRLEILKLV 69

Query: 61  RKDGALHPRPITRLLLAIKRTKRCFAKLIRNFSVHDG--DDSKALVVVPKSTYSGKLLKR 120
            K+ ALHPRPITR+LLA+K+TKR FA LIRNF+ HD   ++SKALV+VPKS+Y+ K+LKR
Sbjct: 70  HKENALHPRPITRILLALKKTKRRFANLIRNFTHHDDQLEESKALVLVPKSSYAAKILKR 129

Query: 121 NKKLMVAKQQGRFLLTNGSPAPGV--WPRIESFSGPLVYDLRRDEKKEEEEDGYWSNGVE 180
           NK   V K QGRFLLTNGSP P V    RI+ FSGP++YD R               GVE
Sbjct: 130 NKTFSVGKTQGRFLLTNGSPDPDVKIGRRIQHFSGPILYDAR---SXXXXXXXXXXXGVE 189

Query: 181 EIRWDTMFQNLKPT 191
           EIRWD MFQNL+PT
Sbjct: 190 EIRWDAMFQNLRPT 200

The following BLAST results are available for this feature:

BLAST of Carg04213 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525324.1	6.9e-105	100.00	uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo]	[more]
XP_022948497.1	7.6e-104	99.47	uncharacterized protein LOC111452156 [Cucurbita moschata]	[more]
XP_022998747.1	8.2e-98	95.29	uncharacterized protein LOC111493318 [Cucurbita maxima]	[more]
XP_022153409.1	1.1e-78	80.31	uncharacterized protein LOC111020921 [Momordica charantia]	[more]
PON90040.1	5.2e-68	69.95	Sterile alpha motif/pointed domain containing protein [Trema orientalis]	[more]

BLAST of Carg04213 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80520.1	2.3e-46	51.96	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G15760.1	4.0e-46	49.76	Sterile alpha motif (SAM) domain-containing protein	[more]
AT2G12462.1	4.1e-19	50.00	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con...	[more]

BLAST of Carg04213 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04213 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5EWX7\|A0A2P5EWX7_9ROSA	3.4e-68	69.95	Sterile alpha motif/pointed domain containing protein OS=Trema orientalis OX=630...	[more]
tr\|A0A2P5BS85\|A0A2P5BS85_PARAD	2.9e-67	68.97	Sterile alpha motif/pointed domain containing protein OS=Parasponia andersonii O...	[more]
tr\|A0A2C9UYZ2\|A0A2C9UYZ2_MANES	4.2e-66	68.04	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061500 PE=4 SV=...	[more]
tr\|A0A1S3BZ95\|A0A1S3BZ95_CUCME	5.4e-66	69.07	uncharacterized protein LOC103494673 OS=Cucumis melo OX=3656 GN=LOC103494673 PE=...	[more]
tr\|A0A0A0KVK9\|A0A0A0KVK9_CUCSA	2.1e-65	68.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006310 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013761	SAM/pointed_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04213-RA	Carg04213-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.150.50		coord: 1..65 e-value: 4.0E-6 score: 28.3
None	No IPR available	PANTHER	PTHR33915:SF1	SUBFAMILY NOT NAMED	coord: 1..190
None	No IPR available	PANTHER	PTHR33915	FAMILY NOT NAMED	coord: 1..190
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 2..62 e-value: 1.99544E-5 score: 39.1449
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	SSF47769	SAM/Pointed domain	coord: 19..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04213	Cla012738	Watermelon (97103) v1	carwmB0191
Carg04213	Csa4G006310	Cucumber (Chinese Long) v2	carcuB0225
Carg04213	MELO3C017849	Melon (DHL92) v3.5.1	carmeB0211
Carg04213	ClCG07G012300	Watermelon (Charleston Gray)	carwcgB0200
Carg04213	CSPI04G01870	Wild cucumber (PI 183967)	carcpiB0232
Carg04213	Cucsa.096120	Cucumber (Gy14) v1	carcgyB0236
Carg04213	CmaCh01G001620	Cucurbita maxima (Rimu)	carcmaB0278
Carg04213	CmaCh14G013660	Cucurbita maxima (Rimu)	carcmaB0274
Carg04213	CmoCh14G014010	Cucurbita moschata (Rifu)	carcmoB0281
Carg04213	CmoCh01G001710	Cucurbita moschata (Rifu)	carcmoB0285
Carg04213	Lsi07G004280	Bottle gourd (USVL1VR-Ls)	carlsiB183
Carg04213	Cp4.1LG04g09190	Cucurbita pepo (Zucchini)	carcpeB0291
Carg04213	Cp4.1LG03g13540	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04213	Cp4.1LG02g15100	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04213	CsGy4G001790	Cucumber (Gy14) v2	carcgybB0214
Carg04213	MELO3C017849.2	Melon (DHL92) v3.6.1	carmedB0216
Carg04213	CsaV3_4G001840	Cucumber (Chinese Long) v3	carcucB0229
Carg04213	Cla97C07G139080	Watermelon (97103) v2	carwmbB0206
Carg04213	Bhi01G002793	Wax gourd	carwgoB0247

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04213	Carg06521	Silver-seed gourd	carcarB138

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04213	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04213	Melon (DHL92) v3.5.1	carmeB0210
Carg04213	Melon (DHL92) v3.6.1	carmedB0215
Carg04213	Watermelon (Charleston Gray)	carwcgB0197
Carg04213	Watermelon (Charleston Gray)	carwcgB0199
Carg04213	Watermelon (Charleston Gray)	carwcgB0201
Carg04213	Watermelon (97103) v1	carwmB0189
Carg04213	Watermelon (97103) v1	carwmB0192
Carg04213	Watermelon (97103) v1	carwmB0193
Carg04213	Watermelon (97103) v2	carwmbB0207
Carg04213	Watermelon (97103) v2	carwmbB0205
Carg04213	Watermelon (97103) v2	carwmbB0209
Carg04213	Wax gourd	carwgoB0246
Carg04213	Wax gourd	carwgoB0250
Carg04213	Silver-seed gourd	carcarB139
Carg04213	Silver-seed gourd	carcarB239
Carg04213	Cucumber (Gy14) v2	carcgybB0215
Carg04213	Cucumber (Gy14) v1	carcgyB0235
Carg04213	Cucurbita maxima (Rimu)	carcmaB0273
Carg04213	Cucurbita maxima (Rimu)	carcmaB0276
Carg04213	Cucurbita maxima (Rimu)	carcmaB0277
Carg04213	Cucurbita maxima (Rimu)	carcmaB0284
Carg04213	Cucurbita moschata (Rifu)	carcmoB0280
Carg04213	Cucurbita moschata (Rifu)	carcmoB0283
Carg04213	Cucurbita moschata (Rifu)	carcmoB0284
Carg04213	Cucurbita pepo (Zucchini)	carcpeB0280
Carg04213	Cucurbita pepo (Zucchini)	carcpeB0283
Carg04213	Cucurbita pepo (Zucchini)	carcpeB0292
Carg04213	Wild cucumber (PI 183967)	carcpiB0233
Carg04213	Wild cucumber (PI 183967)	carcpiB0236
Carg04213	Cucumber (Chinese Long) v2	carcuB0226
Carg04213	Cucumber (Chinese Long) v3	carcucB0230
Carg04213	Bottle gourd (USVL1VR-Ls)	carlsiB179