Carg03809 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03809
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	tRNA dimethylallyltransferase
Location	Cucurbita_argyrosperma_scaffold_011 : 127436 .. 129667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTTTCCCTGTTATCAAGGTTACTCATGCACAGGCCACCTGCACCTTTCTGAACTACAAATTTGTTTCGGGGTTTTTGTGCTTACGAAAATCGGGAGAAAGTGAAAGACTGGAAATTTCATCTTATTCTCGTTCTTTTACGGATTTTGGGCCTTGAATTGTAAGGAGTGGACCGGCCCTAAATGATAGCATGGACCTTGCCATAATGCCTGGGTTGCTTTGCCAAAGTTTCAGAAGTTTTTTCTTTTCAGCCTCGGCCATGGCTTATTCCTGGGTTGATTTTCGGGGTCTTTTCCGCTTCAGTTTCTGTGCATTTGGCTGTTGTTCTGTTTGAGCAGGAATAGGATGGAAAGGTTCTTCTCGGTGCGGCAAATCCAAACTCAATGCGACTCTTCCCACTCAATCATGCTTGTTTCAGGGCCTCCTTCCTGGTACTGCCCCATATCCCTCTCTCGCTTCTTCTTCATTTCGTTGAATTCATTCTAGTTTCCCTCAAAATTTTGCAGCGGAAAGACTTCCTTGCTTTTTCAGTTTGCTTTTAATTTGGGTTTGGAGGGAAATGTTGCCTTCATCTGCAACCGCCGCAAATTAGAGAATAAACCTCCATATCTCTCGCAGGCATCTCTCTCCTTGTTTCTGTCTGTGTGTGTTGTGGTCATATTGAATAGAATGTTGCATATTTGCTGAAACTTAGAACCCTTTGGGCCTAACATCCAGGGAGTTGATCCAGCATCCGAAACCTTTCAGCGCATACAAATGAAGTCGGTGGTCATTCCATTCTTTATCCTAATTAAATGACGATCGTCCTTCACTTGCTTTACTTGAACGTGTGAATTCTCTAATTCTGACTTCAGGTATTTGGAGGACGACGAGGGAATTAACAAGTACTTCTCTGCATTTCACCTGCATCGTACACTTCCCGTGGCAGTTGTTATTGACGATTTTGGAGATTTTTTCGAGGAAAGGTCTTCATATTTTCCCATGTTTTTTTTTATCTTTCCAACTTCTATCCACTGGTACTCTGTGCATTACTATGTATTTCTGTAGGTTTTTATTCCCTTTTTCATTTCACCTTCTCTTTGTAAGGCGATGTCAGGAAAAATATGCCAATCCTCGCGGAAGAGACCTAGCAATGGTTAGAACACTAGCACTTTGTCATAATGCCATGAGCCTAGCGAAGTGGGTTTGCATCTCTCAGAACTTCCAATGAATAAATTACTCTCCTAGATGACACCCTCTTCTTTGCTGCTTCTAACTTGAAAGATTTTTCAGTCAGTGTAGGCCTTGCCAGCTTGTGTTGTCTGATACCCACCACGGAGAGTCCCCAAGGTTGATATTCATTTATAAGAGATGGGTTCCAACCATTTTCACCATTAGAGGTTAGTTTAAGCTGAGTGACTGCTCAACCCAAATTCAAAGCAGTTGACCCCATTTTTTGTTATTTGTGTATTGCATGGCAATTTCAGAAAATACAAATGATAAGTGGTGCAAAGTGATTGTGTTGTCTTCTTGATGGTGGTTAACTGATATGCCCTTTTGGCCACCTGTATTGAACTATTTCTGGTTTATGTTGAAGGTGATGGGTCTGGATGGTTCATCCTGAGAAGTATTAACAATTGTGGAAATGACTGTTGTTTGAGGACTAAAAGTGCAAAATACTCGATTTCTCTTCAGTTCCTGAGTTTGGAGGAAGTTTCTGAAGACATTACAGAATAATGGATTTCCTTGCAGCTTGAGTACTTCATCATTTGTAAGTCTGTAGGTTGACCTATTCTTTTTAGGAATTATACGCTGATATATTAGTATTTGTTTATGAAGAACAATCTTCTGATATTAGTATCATTATTATATAAACTTGGTGTCTGTTCAACTTTTATGATGGGTGGTTAATTGTTGCCTGTATAATCTTACCAATCAATCAAGTTTTTCCATCATCTCAATTTTGAAACAGCATGAAATTCTTTCAGTTTTCTCACTAAACCAGCAAGCAGTTTTGAGTATTGTTTATGGTAGATTATTGCCTTTCAGCTCCCTGTATTTATCTGAGAAGAGGTGGTCTTATGTTCTTTCAGAATATCTAACTCTGTTTTCTACTAATCATTCACAAGCACAGGGGAAAGCCAGCAGAAAAGAAAAGAACAGAAAAGAAAACAACTGAAAGTTGACCCTGGGCTCAACCCTTGTTTACAAATCCTGGTTCCCGTTAAGATTTTATAGTAAACCCCTTTTTG

mRNA sequence

TGTCTTTCCCTGTTATCAAGGTTACTCATGCACAGGCCACCTGCACCTTTCTGAACTACAAATTTGTTTCGGGGTTTTTGTGCTTACGAAAATCGGGAGAAAGTGAAAGACTGGAAATTTCATCTTATTCTCGTTCTTTTACGGATTTTGGGCCTTGAATTGTAAGGAGTGGACCGGCCCTAAATGATAGCATGGACCTTGCCATAATGCCTGGGTTGCTTTGCCAAAGTTTCAGAAGTTTTTTCTTTTCAGCCTCGGCCATGGCTTATTCCTGGGTTGATTTTCGGGGTCTTTTCCGCTTCAGTTTCTGTGCATTTGGCTGTTGTTCTGTTTGAGCAGGAATAGGATGGAAAGGTTCTTCTCGGTGCGGCAAATCCAAACTCAATGCGACTCTTCCCACTCAATCATGCTTGTTTCAGGGCCTCCTTCCTGCGGAAAGACTTCCTTGCTTTTTCAGTTTGCTTTTAATTTGGGTTTGGAGGGAAATGTTGCCTTCATCTGCAACCGCCGCAAATTAGAGAATAAACCTCCATATCTCTCGCAGGCATCTCTCTCCTTGTTTCTGTCTGGAGTTGATCCAGCATCCGAAACCTTTCAGCGCATACAAATGAAGTATTTGGAGGACGACGAGGGAATTAACAAGTACTTCTCTGCATTTCACCTGCATCGTACACTTCCCGTGGCAGTTGTTATTGACGATTTTGGAGATTTTTTCGAGGAAAGGTCTTCATATTTTCCCATGTTTTTATTCCCTTTTTCATTTCACCTTCTCTTTGTAAGGCGATGTCAGGAAAAATATGCCAATCCTCGCGGAAGAGACCTAGCAATGGTTAGAACACTAGCACTTTGTCATAATGCCATGAGCCTAGCGAATCAGTGTAGGCCTTGCCAGCTTGTGTTGTCTGATACCCACCACGGAGAGTCCCCAAGGTTGATATTCATTTATAAGAGATGGGTTCCAACCATTTTCACCATTAGAGGTGATGGGTCTGGATGGTTCATCCTGAGAAGTATTAACAATTGTGGAAATGACTGTTGTTTGAGGACTAAAAGTGCAAAATACTCGATTTCTCTTCAGTTCCTGAGTTTGGAGGAAGTTTCTGAAGACATTACAGAATAATGGATTTCCTTGCAGCTTGAGTACTTCATCATTTGTAAGTCTGTAGGTTGACCTATTCTTTTTAGGAATTATACGCTGATATATTAGTATTTGTTTATGAAGAACAATCTTCTGATATTAGTATCATTATTATATAAACTTGGTGTCTGTTCAACTTTTATGATGGGTGGTTAATTGTTGCCTGTATAATCTTACCAATCAATCAAGTTTTTCCATCATCTCAATTTTGAAACAGCATGAAATTCTTTCAGTTTTCTCACTAAACCAGCAAGCAGTTTTGAGTATTGTTTATGGTAGATTATTGCCTTTCAGCTCCCTGTATTTATCTGAGAAGAGGTGGTCTTATGTTCTTTCAGAATATCTAACTCTGTTTTCTACTAATCATTCACAAGCACAGGGGAAAGCCAGCAGAAAAGAAAAGAACAGAAAAGAAAACAACTGAAAGTTGACCCTGGGCTCAACCCTTGTTTACAAATCCTGGTTCCCGTTAAGATTTTATAGTAAACCCCTTTTTG

Coding sequence (CDS)

ATGGAAAGGTTCTTCTCGGTGCGGCAAATCCAAACTCAATGCGACTCTTCCCACTCAATCATGCTTGTTTCAGGGCCTCCTTCCTGCGGAAAGACTTCCTTGCTTTTTCAGTTTGCTTTTAATTTGGGTTTGGAGGGAAATGTTGCCTTCATCTGCAACCGCCGCAAATTAGAGAATAAACCTCCATATCTCTCGCAGGCATCTCTCTCCTTGTTTCTGTCTGGAGTTGATCCAGCATCCGAAACCTTTCAGCGCATACAAATGAAGTATTTGGAGGACGACGAGGGAATTAACAAGTACTTCTCTGCATTTCACCTGCATCGTACACTTCCCGTGGCAGTTGTTATTGACGATTTTGGAGATTTTTTCGAGGAAAGGTCTTCATATTTTCCCATGTTTTTATTCCCTTTTTCATTTCACCTTCTCTTTGTAAGGCGATGTCAGGAAAAATATGCCAATCCTCGCGGAAGAGACCTAGCAATGGTTAGAACACTAGCACTTTGTCATAATGCCATGAGCCTAGCGAATCAGTGTAGGCCTTGCCAGCTTGTGTTGTCTGATACCCACCACGGAGAGTCCCCAAGGTTGATATTCATTTATAAGAGATGGGTTCCAACCATTTTCACCATTAGAGGTGATGGGTCTGGATGGTTCATCCTGAGAAGTATTAACAATTGTGGAAATGACTGTTGTTTGAGGACTAAAAGTGCAAAATACTCGATTTCTCTTCAGTTCCTGAGTTTGGAGGAAGTTTCTGAAGACATTACAGAATAA

Protein sequence

MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENKPPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYSISLQFLSLEEVSEDITE

Homology

[Close]

BLAST of Carg03809 vs. NCBI nr
Match: XP_022959968.1 (uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959970.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959971.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata])

HSP 1 Score: 456.4 bits (1173), Expect = 6.2e-125
Identity = 225/255 (88.24%), Postives = 227/255 (89.02%), Query Frame = 0


Query: 3   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENKPP 62
           RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENKPP
Sbjct: 6   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP 65

Query: 63  YLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF 122
           YLSQ        GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF
Sbjct: 66  YLSQ--------GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF 125

Query: 123 FEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQ 182
           FEE                   RRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQ
Sbjct: 126 FEE-------------------RRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQ 185

Query: 183 LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYSIS 242
           LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGN+CCLRTKSAKYSI+
Sbjct: 186 LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNECCLRTKSAKYSIA 233

Query: 243 LQFLSLEEVSEDITE 258
           LQFLSLEEVSEDITE
Sbjct: 246 LQFLSLEEVSEDITE 233

[Close]

BLAST of Carg03809 vs. NCBI nr
Match: XP_023005109.1 (uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima] >XP_023005110.1 uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima])

HSP 1 Score: 451.8 bits (1161), Expect = 1.5e-123
Identity = 224/257 (87.16%), Postives = 226/257 (87.94%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           MERFFSVRQIQTQCD SHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MERFFSVRQIQTQCDPSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDPASETFQRIQMKYLED+EGINKYFSAFHLHRTLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPASETFQRIQMKYLEDNEGINKYFSAFHLHRTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQEKYANPRGRDLAMVRTLAL HNAMSLANQCRP
Sbjct: 121 DFFEE-------------------RRCQEKYANPRGRDLAMVRTLALSHNAMSLANQCRP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGW ILRSINNCGNDCCLRTKSAKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWLILRSINNCGNDCCLRTKSAKYS 230

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEEVSEDITE
Sbjct: 241 IALQFLSLEEVSEDITE 230

[Close]

BLAST of Carg03809 vs. NCBI nr
Match: XP_023514984.1 (uncharacterized protein LOC111779141 [Cucurbita pepo subsp. pepo] >XP_023514985.1 uncharacterized protein LOC111779141 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447.6 bits (1150), Expect = 2.9e-122
Identity = 224/257 (87.16%), Postives = 226/257 (87.94%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQEKYANPRGRDLAMVRTLALCHNAMSLA   +P
Sbjct: 121 DFFEE-------------------RRCQEKYANPRGRDLAMVRTLALCHNAMSLA---KP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 227

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEEVSEDITE
Sbjct: 241 IALQFLSLEEVSEDITE 227

[Close]

BLAST of Carg03809 vs. NCBI nr
Match: XP_022959972.1 (uncharacterized protein LOC111460863 isoform X2 [Cucurbita moschata])

HSP 1 Score: 442.6 bits (1137), Expect = 9.3e-121
Identity = 221/255 (86.67%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 3   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENKPP 62
           RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENKPP
Sbjct: 6   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP 65

Query: 63  YLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF 122
           YLSQ        GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF
Sbjct: 66  YLSQ--------GVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDF 125

Query: 123 FEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQ 182
           FEE                   RRCQEKYANPRGRDLAMVRTLALCHNAMSLA   +PCQ
Sbjct: 126 FEE-------------------RRCQEKYANPRGRDLAMVRTLALCHNAMSLA---KPCQ 185

Query: 183 LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYSIS 242
           LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGN+CCLRTKSAKYSI+
Sbjct: 186 LVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNECCLRTKSAKYSIA 230

Query: 243 LQFLSLEEVSEDITE 258
           LQFLSLEEVSEDITE
Sbjct: 246 LQFLSLEEVSEDITE 230

[Close]

BLAST of Carg03809 vs. NCBI nr
Match: XP_023005111.1 (uncharacterized protein LOC111498201 isoform X2 [Cucurbita maxima])

HSP 1 Score: 437.6 bits (1124), Expect = 3.0e-119
Identity = 220/257 (85.60%), Postives = 223/257 (86.77%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           MERFFSVRQIQTQCD SHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MERFFSVRQIQTQCDPSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDPASETFQRIQMKYLED+EGINKYFSAFHLHRTLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPASETFQRIQMKYLEDNEGINKYFSAFHLHRTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQEKYANPRGRDLAMVRTLAL HNAMSLA   +P
Sbjct: 121 DFFEE-------------------RRCQEKYANPRGRDLAMVRTLALSHNAMSLA---KP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGW ILRSINNCGNDCCLRTKSAKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWLILRSINNCGNDCCLRTKSAKYS 227

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEEVSEDITE
Sbjct: 241 IALQFLSLEEVSEDITE 227

[Close]

BLAST of Carg03809 vs. TAIR10
Match: AT3G23255.2 (unknown protein)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-61
Identity = 129/262 (49.24%), Postives = 170/262 (64.89%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSH---SIMLVSGPPSCGKTSLLFQFAFNLGLEG---NVAFICNR 60
           +ERFF  +  ++  D +H   ++ L+SGP S GKTSLLFQ A N+        V FIC+R
Sbjct: 2   VERFFPTK--RSSGDENHRRGNLSLLSGPISSGKTSLLFQLALNVASASTTTRVVFICHR 61

Query: 61  RKLENKPPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRT--LPV 120
           +K+E+ PP+LSQ        G+DP+S+ F RIQ+KY++DDEGI KYF+AFHLH    LP 
Sbjct: 62  KKIESNPPFLSQ--------GIDPSSDVFNRIQIKYVDDDEGIRKYFAAFHLHHVDDLPS 121

Query: 121 AVVIDDFGDFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAM 180
           AV+IDDFGD+F + +S                        N R RD+AMVRTLALCHNA+
Sbjct: 122 AVIIDDFGDYFSKLNSVM----------------------NSRARDMAMVRTLALCHNAI 181

Query: 181 SLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCL 240
             AN+   C+LVLS+T+HG+SPR +FIYKRW+P IFTI+G G G F+L S     ND   
Sbjct: 182 VDANRKALCELVLSETNHGDSPRSLFIYKRWIPKIFTIKGHGDGSFLLTS-----NDTSE 224

Query: 241 RTKSAKYSISLQFLSLEEVSED 255
           R  SAKYSI+LQ+L LE++ +D
Sbjct: 242 R--SAKYSIALQYLILEQIIDD 224

[Close]

BLAST of Carg03809 vs. TrEMBL
Match: tr|A0A1S3CAT0|A0A1S3CAT0_CUCME (uncharacterized protein LOC103498887 OS=Cucumis melo OX=3656 GN=LOC103498887 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 3.1e-117
Identity = 209/257 (81.32%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           ME+FFSV+QI T+C+SSHSI LVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDP SETF+RIQMKYLEDD+GI KYFSAFHLH TLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQ KYANPRGRD+AMVRTLALCHNA+SLANQCRP
Sbjct: 121 DFFEE-------------------RRCQAKYANPRGRDIAMVRTLALCHNAVSLANQCRP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDG+GWFILRSINNCGNDCCLRTK AKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGNDCCLRTKRAKYS 230

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEE+SED  E
Sbjct: 241 IALQFLSLEEISEDSRE 230

[Close]

BLAST of Carg03809 vs. TrEMBL
Match: tr|E5GB61|E5GB61_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 3.1e-117
Identity = 209/257 (81.32%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           ME+FFSV+QI T+C+SSHSI LVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDP SETF+RIQMKYLEDD+GI KYFSAFHLH TLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQ KYANPRGRD+AMVRTLALCHNA+SLANQCRP
Sbjct: 121 DFFEE-------------------RRCQAKYANPRGRDIAMVRTLALCHNAVSLANQCRP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDG+GWFILRSINNCGNDCCLRTK AKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGNDCCLRTKRAKYS 230

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEE+SED  E
Sbjct: 241 IALQFLSLEEISEDSRE 230

[Close]

BLAST of Carg03809 vs. TrEMBL
Match: tr|A0A0A0K9H1|A0A0A0K9H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091880 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-116
Identity = 210/257 (81.71%), Postives = 218/257 (84.82%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVAFICNRRKLENK 60
           ME+FFSV+QI T C+SSHSI LVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  PPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFG 120
           PPYLSQ        GVDP SETFQRIQMKYLEDD+GI KYFSAFHLH TLPVAVVIDDFG
Sbjct: 61  PPYLSQ--------GVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFG 120

Query: 121 DFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRP 180
           DFFEE                   RRCQEKYANPRGRDLAMVRTLALC NA+SLANQCRP
Sbjct: 121 DFFEE-------------------RRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRP 180

Query: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSAKYS 240
           CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDG+GWFILRSINNCG DCCLRTK AKYS
Sbjct: 181 CQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYS 230

Query: 241 ISLQFLSLEEVSEDITE 258
           I+LQFLSLEE+SED  E
Sbjct: 241 IALQFLSLEEISEDSRE 230

[Close]

BLAST of Carg03809 vs. TrEMBL
Match: tr|M5XZR9|M5XZR9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216800 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 3.4e-87
Identity = 169/262 (64.50%), Postives = 196/262 (74.81%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDS-SHSIMLVSGPPSCGKTSLLFQFAFNLGL--------EGNVAFI 60
           ++RFFSVRQ+  Q +S SH +ML+SGPPSCGKTSL+FQFAFN  +         G V FI
Sbjct: 2   VQRFFSVRQMDLQQNSQSHPVMLLSGPPSCGKTSLIFQFAFNSAMGEGHHGNTNGKVMFI 61

Query: 61  CNRRKLENKPPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLP 120
           CNRRKLE KPPYLSQ        GVD +SETFQRIQMKY++DDEGI KYF+AFHLH T P
Sbjct: 62  CNRRKLEVKPPYLSQ--------GVDSSSETFQRIQMKYVDDDEGIKKYFAAFHLHETFP 121

Query: 121 VAVVIDDFGDFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNA 180
           VAVVIDDFGDFF+ERS                   CQE+Y NPRGRDLAMVRTLALCHNA
Sbjct: 122 VAVVIDDFGDFFDERS-------------------CQERYGNPRGRDLAMVRTLALCHNA 181

Query: 181 MSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCC 240
           M  AN+  PC+L+LSDTHHG+SPRL+FIYKRWV TIFTI+GDGSG F+L+  +N G    
Sbjct: 182 MVHANETSPCKLLLSDTHHGDSPRLLFIYKRWVTTIFTIQGDGSGSFVLKDNSNSG---- 231

Query: 241 LRTKSAKYSISLQFLSLEEVSE 254
            RTK+AKYSISLQ+L LEE++E
Sbjct: 242 -RTKTAKYSISLQYLFLEEITE 231

[Close]

BLAST of Carg03809 vs. TrEMBL
Match: tr|A0A2I4FBS5|A0A2I4FBS5_9ROSI (uncharacterized protein LOC108997358 isoform X1 OS=Juglans regia OX=51240 GN=LOC108997358 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.0e-84
Identity = 159/257 (61.87%), Postives = 194/257 (75.49%), Query Frame = 0


Query: 1   MERFFSVRQIQTQCDSSHS-IMLVSGPPSCGKTSLLFQFAFN--LGLEGNVAFICNRRKL 60
           +ERFFSVRQ++    S +  IML+SGPPSCGKTSLLFQFAFN  +G    V FICNRRKL
Sbjct: 2   VERFFSVRQVELLNHSHYDPIMLLSGPPSCGKTSLLFQFAFNSAVGSSHEVVFICNRRKL 61

Query: 61  ENKPPYLSQASLSLFLSGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVID 120
           E+KPPYLSQ        G+DP+S+TFQRIQMKY+E+DEGI  YF+AFHLH T+P AVVID
Sbjct: 62  ESKPPYLSQ--------GIDPSSDTFQRIQMKYVEEDEGIKNYFAAFHLHETIPAAVVID 121

Query: 121 DFGDFFEERSSYFPMFLFPFSFHLLFVRRCQEKYANPRGRDLAMVRTLALCHNAMSLANQ 180
           DFGDFFEERS                   CQEKY NPRGRDLAMVRTLALCHNA++ AN+
Sbjct: 122 DFGDFFEERS-------------------CQEKYNNPRGRDLAMVRTLALCHNAIAHANK 181

Query: 181 CRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNDCCLRTKSA 240
             PC+L+LSD HHG+SPRL+FIYKRW+P IFTI+GDG G F+L+S ++      +R ++A
Sbjct: 182 TGPCKLLLSDKHHGDSPRLLFIYKRWIPAIFTIKGDGLGSFVLKSNSSSVTGSSVRMRTA 231

Query: 241 KYSISLQFLSLEEVSED 255
           KYSI+LQ L+LE ++E+
Sbjct: 242 KYSIALQHLTLEGITEE 231

The following BLAST results are available for this feature:

BLAST of Carg03809 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959968.1	6.2e-125	88.24	uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_0229599...	[more]
XP_023005109.1	1.5e-123	87.16	uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima] >XP_023005110...	[more]
XP_023514984.1	2.9e-122	87.16	uncharacterized protein LOC111779141 [Cucurbita pepo subsp. pepo] >XP_023514985....	[more]
XP_022959972.1	9.3e-121	86.67	uncharacterized protein LOC111460863 isoform X2 [Cucurbita moschata]	[more]
XP_023005111.1	3.0e-119	85.60	uncharacterized protein LOC111498201 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg03809 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23255.2	1.5e-61	49.24	unknown protein	[more]

BLAST of Carg03809 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03809 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAT0\|A0A1S3CAT0_CUCME	3.1e-117	81.32	uncharacterized protein LOC103498887 OS=Cucumis melo OX=3656 GN=LOC103498887 PE=...	[more]
tr\|E5GB61\|E5GB61_CUCME	3.1e-117	81.32	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0K9H1\|A0A0A0K9H1_CUCSA	1.6e-116	81.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091880 PE=4 SV=1	[more]
tr\|M5XZR9\|M5XZR9_PRUPE	3.4e-87	64.50	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216800 PE=4 SV=1	[more]
tr\|A0A2I4FBS5\|A0A2I4FBS5_9ROSI	6.0e-84	61.87	uncharacterized protein LOC108997358 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03809-RA	Carg03809-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 16..241 e-value: 1.7E-7 score: 32.9
None	No IPR available	PANTHER	PTHR12181	LIPIN	coord: 2..254
None	No IPR available	PANTHER	PTHR12181:SF54	SUBFAMILY NOT NAMED	coord: 2..254
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 19..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03809	Cla001483	Watermelon (97103) v1	carwmB0986
Carg03809	Csa6G091880	Cucumber (Chinese Long) v2	carcuB0995
Carg03809	MELO3C022353	Melon (DHL92) v3.5.1	carmeB0951
Carg03809	ClCG06G001760	Watermelon (Charleston Gray)	carwcgB0956
Carg03809	CSPI06G07400	Wild cucumber (PI 183967)	carcpiB1018
Carg03809	Cucsa.349240	Cucumber (Gy14) v1	carcgyB1099
Carg03809	CmaCh08G000210	Cucurbita maxima (Rimu)	carcmaB1361
Carg03809	CmoCh08G000230	Cucurbita moschata (Rifu)	carcmoB1322
Carg03809	Lsi09G017650	Bottle gourd (USVL1VR-Ls)	carlsiB890
Carg03809	Cp4.1LG17g09450	Cucurbita pepo (Zucchini)	carcpeB1359
Carg03809	MELO3C022353.2	Melon (DHL92) v3.6.1	carmedB0957
Carg03809	CsaV3_6G007790	Cucumber (Chinese Long) v3	carcucB1024
Carg03809	Cla97C06G111060	Watermelon (97103) v2	carwmbB1032
Carg03809	Bhi12G002130	Wax gourd	carwgoB1141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03809	Silver-seed gourd	carcarB014
Carg03809	Cucumber (Gy14) v2	carcgybB0968
Carg03809	Cucurbita maxima (Rimu)	carcmaB1351
Carg03809	Cucurbita moschata (Rifu)	carcmoB1312
Carg03809	Cucurbita pepo (Zucchini)	carcpeB1355