CsaV3_6G007790 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G007790
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	tRNA dimethylallyltransferase
Location	chr6 : 6244426 .. 6247363 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTCTCCGGTCTGATTTTCACATTCGCTTCAGCTGTATGCGTTTTGGCTGTTGTTATATATATTCGATCAGCAACAAGATGGAAAAGTTCTTCTCAGTGCAGCAAATCCACACTCACTGCGAATCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGGTACTGACCATCCACATCTTCTCTCTCGTTTCTTCTTCATTTCATTGAATTCTTTCTAACTTTCCTCAAAATTTGCAGTGGAAAAACCTCCTTGCTTTTTCAGTTCGCTTTTAATTTGGGTCTGGAGGGCAATGTTACCTTCATCTGCAACCGCCGCAAATTAGAAAACAAACCTCCATATCTTTCTCAGGCATCTCTCACTTTTTCTGCTTCTGTCTCTTTCATTGGCGGTTATATTGAATAGCATAGAATACTGTACATTTTCTGAATCTTGGGGTTCTTTGGGACTAACATTCAGGGAGTTGATCCAACATCCGAGACCTTTCAGCGTATACAAATGAAGTCGGTGATCGTTTTATTCTTTGTACTAATTAGGTTGCCATATTTGATAATTGAGTACTTCTGCCTTTCCTTTAATTGCTTTACTTGAACCTGTATTCTCTAATTCTGAATTCCAAGGTATTTGGAGGACGACGATGGAATTAAGAAGTACTTCTCTGCGTTTCACTTACATAGTACACTTCCTGTGGCGGTTGTTATTGATGATTTTGGGGATTTTTTCGAGGAAAGGTCTTCAAATTTTCCATTACCTTTTTTTTACTTATCTTTTTATAGGTTTTTCTTTCTCCTTTTCACTTCATCATCTATTGAACAGGCGATGTCAAGAAAAGTATGCTAATCCTCGCGGAAGAGATTTAGCAATGGTTAGAACATTAGCTCTTTGTCAAAATGCCGTGAGTCTAGCAAAGTAGGTTTGCATATATCAGAACTTTCTGTGAATAAATTGATCTCTTAGATTACATCTACACCCTTTTCTTTGCTGCTTATAACTAAGAAGATTTTTCAGTCAATGTAGGCCTTGCCAGCTTGTGTTGTCCGATACACACCATGGAGAGTCCCCAAGGTTGATTTTCATATATAAGAGATGGGTTCCAACCATTTTCACCATAAGAGGTTAGTTTGAGTTGAGTGACTGCTCAACCTAAATTCAAAGCAGATTCCCTTGCTTTTTGTTATTTGTGTTTTACATGGTCAAACCAGAAAATACAGATCTGCAAGTGGAGCAAACTAATTCTGTGGCCTTCATGATGGTTAACTTGGCTGATATGCCATTTTGACCTTTTCTTATTGAATTAATTTTGGTTTATGTTGTAGGTGATGGGGCTGGTTGGTTCATCCTGAGAAGTATTAACAATTGTGGAATCGATTGTTGTTTGAGGACTAAAAGAGCAAAGTATTCGATTGCTCTTCAGTTTCTGAGTTTGGAGGAAATTTCTGAAGACAGTAGGGAACAGTGAATATCTTGGCAGCTTCAGCAATTCATTTGTAAGTATGTCTATTAATCTATTCTTTTTAAAACTTCTGTGATATTTTACTGTTGACATATTAGTATTTGTTGTTATAGAACAATCTTCTGATATCAGTTTCTCTATTGTCTAATCTTAGTTCTGTATAAGATAACTTTTTTGATGGGTGATTCATTGTTGTCTGTATATTATAAATCAATCAAGCTTTTGATATGTCAATCTTGAAACAGCTTGAAATTCTTTCTATTTTCTCACCAAGTGAACAAGCAGTTTGTTTGTGGAAAATTATTGCCTTCCAGACGATCACAAAAAAAGTTCTCTCTGTTGTTCTATTACCATAGCTTGTATTTCTCTTAGAAGAGATGGTCTTTATGTTCTTTCAGAATATCGAGTATTGATCAGCATTGAAGAGCTTTGTAGTTTTATTAATCATTTACAGGCATAAGAGAAAGTCAACAAAAGAGAAGAAAATTTAAAAAACAACTGAAAGTTGACCCTAGGCTCAACACTTGTTTATATGTACTAATTCCCAATAAGATTTTTTTCTAGTAAACTCCTTTTTGATACTCTGGATCACAGAATTCACCACCCAAATCATCACAAGCCTCCGCTGGAAAGACTCTGCAGCAATCATTAAAAAACAAGAATATGAATGCATGTAGAAGTATGAAATAGTGTTGTTTCATAGGAAACGAATTAATAGAGGATGAAAGGTCCTATGGTTTATTGCTTTGAGATCTTACGTCTTGGGACTGTCATATTGTAGATACTCTCTCTCAACTGGCTCTGTAACACTATTCCCTTTTTTGGCCTCTGGTTTTAGCTTTACTTCAGGATACATTTCCACATCACAAGCTTCACCTCCAACAGTGTCACAAGCCTCTGCTGGAAAAACACTGCAAAAATAGACACAAAAGAGTAAATGAAGGTTTTAAAATCAGACATATTGTGGGGTAACAACCAAATATAAAATGATTTGGCTTACGAGGACATGGAGCTGTAGTCAACAGTTGAAGGGTCTTGTCCTACTGCACTTGCCTTTGCTTTTAGGGTTCCTTTGCTTTGCCTTGGCATGGACCTCGTTGGGATTGAGAAGGCCATTGATTTGGCTGTTGGTGGGAGGAGGGAGCATGATGGAGATGCTATGGAAAGAGCTGCCTGGAACTGCATGATGAACAATGGTTCGGTTCGGTCTGCTGTGAAGTTGGTGCTTGGATGTATCTTTAGAGTAGAATTCAGATTTATAAGGTTAAACAGATAAAGTTGGCAAGATATCTCGTGACTGGATAAGGTTTTAAATCAATAATGTTGAGATGAAAGCAACTTTTTTTCTCCTTGAGAAACGAGTGGTTGTGTAGATTTGAATTGACATTATTATATCTCGTCTCTTTCTCCCTCATTTCTTGATATTTCTTATATCACAAACATTCTCGAAGAAAATCCATAGATATGCTTTGATTCCGTT

mRNA sequence

ATGCGTTTTGGCTGTTGTTATATATATTCGATCAGCAACAAGATGGAAAAGTTCTTCTCAGTGCAGCAAATCCACACTCACTGCGAATCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGTGGAAAAACCTCCTTGCTTTTTCAGTTCGCTTTTAATTTGGGTCTGGAGGGCAATGTTACCTTCATCTGCAACCGCCGCAAATTAGAAAACAAACCTCCATATCTTTCTCAGGGAGTTGATCCAACATCCGAGACCTTTCAGCGTATACAAATGAAGTATTTGGAGGACGACGATGGAATTAAGAAGTACTTCTCTGCGTTTCACTTACATAGTACACTTCCTGTGGCGGTTGTTATTGATGATTTTGGGGATTTTTTCGAGGAAAGGCGATGTCAAGAAAAGTATGCTAATCCTCGCGGAAGAGATTTAGCAATGGTTAGAACATTAGCTCTTTGTCAAAATGCCGTGAGTCTAGCAAATCAATGTAGGCCTTGCCAGCTTGTGTTGTCCGATACACACCATGGAGAGTCCCCAAGGTTGATTTTCATATATAAGAGATGGGTTCCAACCATTTTCACCATAAGAGGTGATGGGGCTGGTTGGTTCATCCTGAGAAGTATTAACAATTGTGGAATCGATTGTTGTTTGAGGACTAAAAGAGCAAAGTATTCGATTGCTCTTCAGTTTCTGAGTTTGGAGGAAATTTCTGAAGACAGTAGGGAACAGTGA

Coding sequence (CDS)

ATGCGTTTTGGCTGTTGTTATATATATTCGATCAGCAACAAGATGGAAAAGTTCTTCTCAGTGCAGCAAATCCACACTCACTGCGAATCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGTGGAAAAACCTCCTTGCTTTTTCAGTTCGCTTTTAATTTGGGTCTGGAGGGCAATGTTACCTTCATCTGCAACCGCCGCAAATTAGAAAACAAACCTCCATATCTTTCTCAGGGAGTTGATCCAACATCCGAGACCTTTCAGCGTATACAAATGAAGTATTTGGAGGACGACGATGGAATTAAGAAGTACTTCTCTGCGTTTCACTTACATAGTACACTTCCTGTGGCGGTTGTTATTGATGATTTTGGGGATTTTTTCGAGGAAAGGCGATGTCAAGAAAAGTATGCTAATCCTCGCGGAAGAGATTTAGCAATGGTTAGAACATTAGCTCTTTGTCAAAATGCCGTGAGTCTAGCAAATCAATGTAGGCCTTGCCAGCTTGTGTTGTCCGATACACACCATGGAGAGTCCCCAAGGTTGATTTTCATATATAAGAGATGGGTTCCAACCATTTTCACCATAAGAGGTGATGGGGCTGGTTGGTTCATCCTGAGAAGTATTAACAATTGTGGAATCGATTGTTGTTTGAGGACTAAAAGAGCAAAGTATTCGATTGCTCTTCAGTTTCTGAGTTTGGAGGAAATTTCTGAAGACAGTAGGGAACAGTGA

Protein sequence

MRFGCCYIYSISNKMEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ

Homology

[Close]

BLAST of CsaV3_6G007790 vs. NCBI nr
Match: XP_011656789.1 (PREDICTED: uncharacterized protein LOC101205665 [Cucumis sativus])

HSP 1 Score: 517.7 bits (1332), Expect = 2.2e-143
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MRFGCCYIYSISNKMEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEG 60
           MRFGCCYIYSISNKMEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEG
Sbjct: 1   MRFGCCYIYSISNKMEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEG 60

Query: 61  NVTFICNRRKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAV 120
           NVTFICNRRKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAV
Sbjct: 61  NVTFICNRRKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAV 120

Query: 121 VIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGES 180
           VIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGES
Sbjct: 121 VIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGES 180

Query: 181 PRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISE 240
           PRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISE
Sbjct: 181 PRLIFIYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISE 240

Query: 241 DSREQ 246
           DSREQ
Sbjct: 241 DSREQ 245

[Close]

BLAST of CsaV3_6G007790 vs. NCBI nr
Match: KGN46415.1 (hypothetical protein Csa_6G091880 [Cucumis sativus])

HSP 1 Score: 486.9 bits (1252), Expect = 4.1e-134
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ
Sbjct: 181 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 231

[Close]

BLAST of CsaV3_6G007790 vs. NCBI nr
Match: XP_008459907.1 (PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >XP_008459908.1 PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >ADN33703.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 473.0 bits (1216), Expect = 6.1e-130
Identity = 224/231 (96.97%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           MEKFFSVQQIHT CESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDPTSETF+RIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           Q KYANPRGRD+AMVRTLALC NAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QAKYANPRGRDIAMVRTLALCHNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           FTIRGDGAGWFILRSINNCG DCCLRTKRAKYSIALQFLSLEEISEDSRE+
Sbjct: 181 FTIRGDGAGWFILRSINNCGNDCCLRTKRAKYSIALQFLSLEEISEDSRER 231

[Close]

BLAST of CsaV3_6G007790 vs. NCBI nr
Match: XP_022959968.1 (uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959970.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959971.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata])

HSP 1 Score: 445.7 bits (1145), Expect = 1.0e-121
Identity = 209/228 (91.67%), Postives = 217/228 (95.18%), Query Frame = 0


Query: 17  KFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP 76
           +FFSV+QI T C+SSHSI LVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP
Sbjct: 6   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP 65

Query: 77  YLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRCQE 136
           YLSQGVDP SETFQRIQMKYLEDD+GI KYFSAFHLH TLPVAVVIDDFGDFFEERRCQE
Sbjct: 66  YLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDFFEERRCQE 125

Query: 137 KYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFT 196
           KYANPRGRDLAMVRTLALC NA+SLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFT
Sbjct: 126 KYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFT 185

Query: 197 IRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSRE 245
           IRGDG+GWFILRSINNCG +CCLRTK AKYSIALQFLSLEE+SED  E
Sbjct: 186 IRGDGSGWFILRSINNCGNECCLRTKSAKYSIALQFLSLEEVSEDITE 233

[Close]

BLAST of CsaV3_6G007790 vs. NCBI nr
Match: XP_023005109.1 (uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima] >XP_023005110.1 uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120
Identity = 208/230 (90.43%), Postives = 216/230 (93.91%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           ME+FFSV+QI T C+ SHSI LVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MERFFSVRQIQTQCDPSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDP SETFQRIQMKYLED++GI KYFSAFHLH TLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPASETFQRIQMKYLEDNEGINKYFSAFHLHRTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           QEKYANPRGRDLAMVRTLAL  NA+SLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QEKYANPRGRDLAMVRTLALSHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSRE 245
           FTIRGDG+GW ILRSINNCG DCCLRTK AKYSIALQFLSLEE+SED  E
Sbjct: 181 FTIRGDGSGWLILRSINNCGNDCCLRTKSAKYSIALQFLSLEEVSEDITE 230

[Close]

BLAST of CsaV3_6G007790 vs. TAIR10
Match: AT3G23255.2 (unknown protein)

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-64
Identity = 123/236 (52.12%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSH---SIKLVSGPPSCGKTSLLFQFAFNLGLEGNVT---FICNR 74
           +E+FF  ++  +  + +H   ++ L+SGP S GKTSLLFQ A N+      T   FIC+R
Sbjct: 2   VERFFPTKR--SSGDENHRRGNLSLLSGPISSGKTSLLFQLALNVASASTTTRVVFICHR 61

Query: 75  RKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLH--STLPVAVVIDDFG 134
           +K+E+ PP+LSQG+DP+S+ F RIQ+KY++DD+GI+KYF+AFHLH    LP AV+IDDFG
Sbjct: 62  KKIESNPPFLSQGIDPSSDVFNRIQIKYVDDDEGIRKYFAAFHLHHVDDLPSAVIIDDFG 121

Query: 135 DFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFI 194
           D+F +        N R RD+AMVRTLALC NA+  AN+   C+LVLS+T+HG+SPR +FI
Sbjct: 122 DYFSK---LNSVMNSRARDMAMVRTLALCHNAIVDANRKALCELVLSETNHGDSPRSLFI 181

Query: 195 YKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDS 243
           YKRW+P IFTI+G G G F+L S +          + AKYSIALQ+L LE+I +DS
Sbjct: 182 YKRWIPKIFTIKGHGDGSFLLTSNDT-------SERSAKYSIALQYLILEQIIDDS 225

[Close]

BLAST of CsaV3_6G007790 vs. TrEMBL
Match: tr|A0A0A0K9H1|A0A0A0K9H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091880 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 2.7e-134
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ
Sbjct: 181 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 231

[Close]

BLAST of CsaV3_6G007790 vs. TrEMBL
Match: tr|A0A1S3CAT0|A0A1S3CAT0_CUCME (uncharacterized protein LOC103498887 OS=Cucumis melo OX=3656 GN=LOC103498887 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 224/231 (96.97%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           MEKFFSVQQIHT CESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDPTSETF+RIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           Q KYANPRGRD+AMVRTLALC NAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QAKYANPRGRDIAMVRTLALCHNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           FTIRGDGAGWFILRSINNCG DCCLRTKRAKYSIALQFLSLEEISEDSRE+
Sbjct: 181 FTIRGDGAGWFILRSINNCGNDCCLRTKRAKYSIALQFLSLEEISEDSRER 231

[Close]

BLAST of CsaV3_6G007790 vs. TrEMBL
Match: tr|E5GB61|E5GB61_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 224/231 (96.97%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74
           MEKFFSVQQIHT CESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134
           PPYLSQGVDPTSETF+RIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC
Sbjct: 61  PPYLSQGVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194
           Q KYANPRGRD+AMVRTLALC NAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI
Sbjct: 121 QAKYANPRGRDIAMVRTLALCHNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

Query: 195 FTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           FTIRGDGAGWFILRSINNCG DCCLRTKRAKYSIALQFLSLEEISEDSRE+
Sbjct: 181 FTIRGDGAGWFILRSINNCGNDCCLRTKRAKYSIALQFLSLEEISEDSRER 231

[Close]

BLAST of CsaV3_6G007790 vs. TrEMBL
Match: tr|M5XZR9|M5XZR9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216800 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.7e-88
Identity = 162/237 (68.35%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 15  MEKFFSVQQIHTHCES-SHSIKLVSGPPSCGKTSLLFQFAFNLGL--------EGNVTFI 74
           +++FFSV+Q+     S SH + L+SGPPSCGKTSL+FQFAFN  +         G V FI
Sbjct: 2   VQRFFSVRQMDLQQNSQSHPVMLLSGPPSCGKTSLIFQFAFNSAMGEGHHGNTNGKVMFI 61

Query: 75  CNRRKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDF 134
           CNRRKLE KPPYLSQGVD +SETFQRIQMKY++DD+GIKKYF+AFHLH T PVAVVIDDF
Sbjct: 62  CNRRKLEVKPPYLSQGVDSSSETFQRIQMKYVDDDEGIKKYFAAFHLHETFPVAVVIDDF 121

Query: 135 GDFFEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIF 194
           GDFF+ER CQE+Y NPRGRDLAMVRTLALC NA+  AN+  PC+L+LSDTHHG+SPRL+F
Sbjct: 122 GDFFDERSCQERYGNPRGRDLAMVRTLALCHNAMVHANETSPCKLLLSDTHHGDSPRLLF 181

Query: 195 IYKRWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDS 243
           IYKRWV TIFTI+GDG+G F+L+  +N G     RTK AKYSI+LQ+L LEEI+E S
Sbjct: 182 IYKRWVTTIFTIQGDGSGSFVLKDNSNSG-----RTKTAKYSISLQYLFLEEITEAS 233

[Close]

BLAST of CsaV3_6G007790 vs. TrEMBL
Match: tr|A0A2I4FBU9|A0A2I4FBU9_9ROSI (uncharacterized protein LOC108997358 isoform X2 OS=Juglans regia OX=51240 GN=LOC108997358 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.9e-88
Identity = 158/237 (66.67%), Postives = 195/237 (82.28%), Query Frame = 0


Query: 15  MEKFFSVQQI----HTHCESSHSIKLVSGPPSCGKTSLLFQFAFN--LGLEGNVTFICNR 74
           +E+FFSV+Q+    H+H +    I L+SGPPSCGKTSLLFQFAFN  +G    V FICNR
Sbjct: 2   VERFFSVRQVELLNHSHYD---PIMLLSGPPSCGKTSLLFQFAFNSAVGSSHEVVFICNR 61

Query: 75  RKLENKPPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDF 134
           RKLE+KPPYLSQG+DP+S+TFQRIQMKY+E+D+GIK YF+AFHLH T+P AVVIDDFGDF
Sbjct: 62  RKLESKPPYLSQGIDPSSDTFQRIQMKYVEEDEGIKNYFAAFHLHETIPAAVVIDDFGDF 121

Query: 135 FEERRCQEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYK 194
           FEER CQEKY NPRGRDLAMVRTLALC NA++ AN+  PC+L+LSD HHG+SPRL+FIYK
Sbjct: 122 FEERSCQEKYNNPRGRDLAMVRTLALCHNAIAHANKTGPCKLLLSDKHHGDSPRLLFIYK 181

Query: 195 RWVPTIFTIRGDGAGWFILRSINNCGIDCCLRTKRAKYSIALQFLSLEEISEDSREQ 246
           RW+P IFTI+GDG G F+L+S ++      +R + AKYSIALQ L+LE I+E+S ++
Sbjct: 182 RWIPAIFTIKGDGLGSFVLKSNSSSVTGSSVRMRTAKYSIALQHLTLEGITEESEQR 235

The following BLAST results are available for this feature:

BLAST of CsaV3_6G007790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656789.1	2.2e-143	100.00	PREDICTED: uncharacterized protein LOC101205665 [Cucumis sativus]	[more]
KGN46415.1	4.1e-134	100.00	hypothetical protein Csa_6G091880 [Cucumis sativus]	[more]
XP_008459907.1	6.1e-130	96.97	PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >XP_008459908.1 P...	[more]
XP_022959968.1	1.0e-121	91.67	uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_0229599...	[more]
XP_023005109.1	2.0e-120	90.43	uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima] >XP_023005110...	[more]

BLAST of CsaV3_6G007790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23255.2	5.4e-64	52.12	unknown protein	[more]

BLAST of CsaV3_6G007790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9H1\|A0A0A0K9H1_CUCSA	2.7e-134	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091880 PE=4 SV=1	[more]
tr\|A0A1S3CAT0\|A0A1S3CAT0_CUCME	4.1e-130	96.97	uncharacterized protein LOC103498887 OS=Cucumis melo OX=3656 GN=LOC103498887 PE=...	[more]
tr\|E5GB61\|E5GB61_CUCME	4.1e-130	96.97	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|M5XZR9\|M5XZR9_PRUPE	1.7e-88	68.35	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216800 PE=4 SV=1	[more]
tr\|A0A2I4FBU9\|A0A2I4FBU9_9ROSI	2.9e-88	66.67	uncharacterized protein LOC108997358 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G007790.1	CsaV3_6G007790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 30..207 e-value: 1.1E-6 score: 30.3
None	No IPR available	PANTHER	PTHR12181:SF54	SUBFAMILY NOT NAMED	coord: 15..243
None	No IPR available	PANTHER	PTHR12181	LIPIN	coord: 15..243
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 33..177

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G007790	CSPI06G07400	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G007790	Cucsa.349240	Cucumber (Gy14) v1	cgycucB532
CsaV3_6G007790	CmaCh08G000210	Cucurbita maxima (Rimu)	cmacucB1072
CsaV3_6G007790	CmoCh08G000230	Cucurbita moschata (Rifu)	cmocucB1054
CsaV3_6G007790	Cp4.1LG17g09450	Cucurbita pepo (Zucchini)	cpecucB0403
CsaV3_6G007790	Carg03809	Silver-seed gourd	carcucB1024
CsaV3_6G007790	Cla001483	Watermelon (97103) v1	cucwmB562
CsaV3_6G007790	MELO3C022353	Melon (DHL92) v3.5.1	cucmeB444
CsaV3_6G007790	ClCG06G001760	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G007790	Lsi09G017650	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G007790	MELO3C022353.2	Melon (DHL92) v3.6.1	cucmedB435
CsaV3_6G007790	Cla97C06G111060	Watermelon (97103) v2	cucwmbB487
CsaV3_6G007790	Bhi12G002130	Wax gourd	cucwgoB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G007790	Silver-seed gourd	carcucB0012
CsaV3_6G007790	Silver-seed gourd	carcucB0734
CsaV3_6G007790	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G007790	Cucumber (Gy14) v1	cgycucB239
CsaV3_6G007790	Cucurbita maxima (Rimu)	cmacucB0439
CsaV3_6G007790	Cucurbita moschata (Rifu)	cmocucB0148
CsaV3_6G007790	Cucurbita moschata (Rifu)	cmocucB0433
CsaV3_6G007790	Cucurbita pepo (Zucchini)	cpecucB0166
CsaV3_6G007790	Cucurbita pepo (Zucchini)	cpecucB0784
CsaV3_6G007790	Cucurbita pepo (Zucchini)	cpecucB1075
CsaV3_6G007790	Wild cucumber (PI 183967)	cpicucB053