Carg03548 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03548
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_006 : 616268 .. 618359 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACACTTCTCCACCAAACCCTACTCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCGTCAAGCTCTCCCTCTCCTCCGCCTCAGCCCCACCAGATCATCCCAAAACAACAACCCCCCACAAAATTTTTCCTCCTCTTCCTCCTCCTCCTCTGCCGCGGCGGCCGCCAACGTTTCGGTGACTGTTGCACTCCACATAGGGTTACCAAGCCCTAGCGCCTCAGAAATGGCAACCCTTTTGCTGTCTAGTAATCAAAATCAAGAGGAAGAAGACGAGGATGAAGACGACGAAGAACACGAAGAACACGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGGTAACCTTCAAAATTTCACTAACTTTGATCTTAATTCTCCCAAAAAAAACCCAATTTTTTTGTTTTTGCATGGATTTGTTGACTCAATTAATGTCTGTCTCCACTTTTTCTGATCCAACTCTGAGTAGCTTCTTTAAGTGATTGAACAACACAGGCAATGTTCTTTGTGCCTCCCTCCCTCTCTCCCTTTACTACTTTGAACTCTGTGCTGTTCTTCTTCCAAATTTTTTCCTTTCTTTTTTACTCCAAATTTTCTCCTTCTTTCTCGGGAAACAAACACATGCTTTTGCGTATTCTATATTCCATACCCTCTTACCCACTTGATTTCAAGAACAATTCTTTCTTTTTTCTTCAATTTCTTCCTTTTCTCTCAAATGGGTTCTCTAAAAATTTGATCTTTATGATATAAGAGTGCTACAAACATCAAAAGCTTGTATTTTTCTCTAATGGGTACTCCAAAAATTTGTTCTTTATGATATTAGAGTGCTACAAACATCAAAAGTTCGTATTTTTCTCTAATGGGTACTCCAAAAATTTGTTCTTTATGATATTAGAGTGCTACAAACATCAAAAGTTCGTATTTTTCTCTAATGGGTACTCCAAAAATTTGTTCTTTATGATGTTTGAGTGCTACAAACATCAAAATGATAAGGAATTATGCTAAAGTTTGTATTTTTCTCTGATGGGTACTCTAAAAGTTTGATCTTTATGATATAAGAGTGCTAGAATCATCAAAATGAGAGGGAATTATGCAAAAGTTTGTATTTTTCTTTAATGGGTACTTCTAAATCGTTCGTTTTCTTTAAACAATCATTGTCGTTTGAGAATTACAAGAACTCATCAATCAAATCCTTTCAACTTTTGAATCGAATCAACATCGGCCAACGTGAGTATGACCGAGTAAGAATCATCATTTTTTTAGGTTTGAAGTTTAAATCCGCTTCGAGTATAAGAAAAAAAAAAGGGTTTTTGTTTATAAAGTTTTAGGCTTTGTTTGATAACGATTTGGTTTGTTTGATATAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATCATCGTCATCATCGTCATCACGGGTTCGATGAAGAGGAGGACCCGGCTTATTCGGAAGTCGAACAAGATCATGATTGA

mRNA sequence

ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACACTTCTCCACCAAACCCTACTCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCTAATCAAAATCAAGAGGAAGAAGACGAGGATGAAGACGACGAAGAACACGAAGAACACGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATCATCGTCATCATCGTCATCACGGGTTCGATGAAGAGGAGGACCCGGCTTATTCGGAAGTCGAACAAGATCATGATTGA

Coding sequence (CDS)

ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACACTTCTCCACCAAACCCTACTCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCTAATCAAAATCAAGAGGAAGAAGACGAGGATGAAGACGACGAAGAACACGAAGAACACGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATCATCGTCATCATCGTCATCACGGGTTCGATGAAGAGGAGGACCCGGCTTATTCGGAAGTCGAACAAGATCATGATTGA

Protein sequence

MDDPSTNFFTNLFKFNTSPPNPTPPPPPPPPYFLPTHLHAPPSSPPLLIKIKRKKTRMKTTKNTKNTKEEEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHHHRHHRHHGFDEEEDPAYSEVEQDHD

Homology

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BLAST of Carg03548 vs. NCBI nr
Match: XP_022934659.1 (zinc finger protein WIP2-like [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 144 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 203

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 204 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 263

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN XXXXXXXXXX
Sbjct: 264 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN-XXXXXXXXXX 323

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD
Sbjct: 324 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 353

[Close]

BLAST of Carg03548 vs. NCBI nr
Match: XP_023528242.1 (zinc finger protein WIP2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 150 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 209

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 210 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 269

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN XXXXXXXXXX
Sbjct: 270 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN-XXXXXXXXXX 329

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD
Sbjct: 330 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 359

[Close]

BLAST of Carg03548 vs. NCBI nr
Match: XP_008443097.1 (PREDICTED: zinc finger protein WIP2-like [Cucumis melo])

HSP 1 Score: 392.9 bits (1008), Expect = 9.6e-106
Identity = 200/211 (94.79%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVC+KTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 145 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGP 204

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 205 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 264

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX
Sbjct: 265 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 324

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXXXXX          AYSEVEQDHD
Sbjct: 325 XXXXXXXXXXXQRFDNEEDDHAYSEVEQDHD 355

[Close]

BLAST of Carg03548 vs. NCBI nr
Match: XP_022983017.1 (zinc finger protein WIP2-like [Cucurbita maxima])

HSP 1 Score: 390.2 bits (1001), Expect = 6.2e-105
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 141 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 200

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 201 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 260

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN XXXXXXXXXX
Sbjct: 261 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYN-XXXXXXXXXX 320

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXXXXXXXXXXXXXX AYSEVEQDHD
Sbjct: 321 XXXXXXXXXXXXXXXXXXXXXAYSEVEQDHD 350

[Close]

BLAST of Carg03548 vs. NCBI nr
Match: XP_011652116.1 (PREDICTED: zinc finger protein WIP2-like [Cucumis sativus] >KGN59334.1 hypothetical protein Csa_3G810580 [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 194/211 (91.94%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVC+KTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 146 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGP 205

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 206 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 265

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHA   XXXXXXXXXXX
Sbjct: 266 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAXXXXXXXXXXXXXX 325

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXX             AYSEVEQDHD
Sbjct: 326 XXXXXXXXQRFDNEEDDH---AYSEVEQDHD 353

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BLAST of Carg03548 vs. TAIR10
Match: AT3G57670.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-101
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQ
Sbjct: 195 SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ 254

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           PTGMLRLPCYCC+PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG
Sbjct: 255 PTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 314

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH AY
Sbjct: 315 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAY 355

[Close]

BLAST of Carg03548 vs. TAIR10
Match: AT1G51220.1 (WIP domain protein 5)

HSP 1 Score: 332.4 bits (851), Expect = 2.8e-91
Identity = 141/157 (89.81%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 91  LNKG-QYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQP 150
           L++G  YWIPTPSQILIGPTQF+CP+CFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQP
Sbjct: 157 LHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP 216

Query: 151 TGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGD 210
           TGMLRLPC+CC+PGC+NNIDHPRAKPLKDFRTLQTHYKRKHG KPF CR CGKAFAV+GD
Sbjct: 217 TGMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGD 276

Query: 211 WRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH 247
           WRTHEKNCGKLWYC CGSDFKHKRSLKDH+KAFGNGH
Sbjct: 277 WRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGH 313

[Close]

BLAST of Carg03548 vs. TAIR10
Match: AT3G20880.1 (WIP domain protein 4)

HSP 1 Score: 328.9 bits (842), Expect = 3.1e-90
Identity = 135/151 (89.40%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 96  YWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRL 155
           +WIPTPSQIL+GPTQFSCP+CFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQPT ML+L
Sbjct: 241 FWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKL 300

Query: 156 PCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK 215
           PCYCC+PGC+NNIDHPRA+PLKDFRTLQTHYKRKHG++PF CR+CGKAFAV+GDWRTHEK
Sbjct: 301 PCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEK 360

Query: 216 NCGKLWYCICGSDFKHKRSLKDHIKAFGNGH 247
           NCGKLWYC CGSDFKHKRSLKDH+KAFGNGH
Sbjct: 361 NCGKLWYCSCGSDFKHKRSLKDHVKAFGNGH 391

[Close]

BLAST of Carg03548 vs. TAIR10
Match: AT1G13290.1 (C2H2-like zinc finger protein)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-82
Identity = 130/159 (81.76%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 93  KGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ-PTG 152
           +GQYWIP+ SQIL+GPTQFSC VC KTFNR+NNMQMHMWGHGSQYR+GPESLRGT+  + 
Sbjct: 83  QGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSS 142

Query: 153 MLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR-KCGKAFAVRGDW 212
           +LRLPCYCC+ GC+NNIDHPR+KPLKDFRTLQTHYKRKHG KPF CR KC K FAVRGDW
Sbjct: 143 ILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202

Query: 213 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           RTHEKNCGKLW+C+CGSDFKHKRSLKDH++AFG+GHAA+
Sbjct: 203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAH 241

[Close]

BLAST of Carg03548 vs. TAIR10
Match: AT1G34790.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-81
Identity = 126/161 (78.26%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           + L+   YWIP P QILIG T FSC VCFKTFNRYNN+QMHMWGHGSQYR+GPESL+GTQ
Sbjct: 123 NELSGKAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQ 182

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           P  ML +PCYCC  GCRN+IDHPR+KPLKDFRTLQTHYKRKHG KPF CR CGK  AV+G
Sbjct: 183 PRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKG 242

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGK W C+CGSDFKHKRSLKDH+KAFG+GH  Y
Sbjct: 243 DWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPY 283

[Close]

BLAST of Carg03548 vs. Swiss-Prot
Match: sp|Q9SVY1|ZWIP2_ARATH (Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-100
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQ
Sbjct: 195 SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ 254

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           PTGMLRLPCYCC+PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG
Sbjct: 255 PTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 314

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH AY
Sbjct: 315 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAY 355

[Close]

BLAST of Carg03548 vs. Swiss-Prot
Match: sp|Q8W031|ZWIP5_ARATH (Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.0e-90
Identity = 141/157 (89.81%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 91  LNKG-QYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQP 150
           L++G  YWIPTPSQILIGPTQF+CP+CFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQP
Sbjct: 157 LHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP 216

Query: 151 TGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGD 210
           TGMLRLPC+CC+PGC+NNIDHPRAKPLKDFRTLQTHYKRKHG KPF CR CGKAFAV+GD
Sbjct: 217 TGMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGD 276

Query: 211 WRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH 247
           WRTHEKNCGKLWYC CGSDFKHKRSLKDH+KAFGNGH
Sbjct: 277 WRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGH 313

[Close]

BLAST of Carg03548 vs. Swiss-Prot
Match: sp|Q8W030|ZWIP4_ARATH (Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 5.6e-89
Identity = 135/151 (89.40%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 96  YWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRL 155
           +WIPTPSQIL+GPTQFSCP+CFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQPT ML+L
Sbjct: 241 FWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKL 300

Query: 156 PCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK 215
           PCYCC+PGC+NNIDHPRA+PLKDFRTLQTHYKRKHG++PF CR+CGKAFAV+GDWRTHEK
Sbjct: 301 PCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEK 360

Query: 216 NCGKLWYCICGSDFKHKRSLKDHIKAFGNGH 247
           NCGKLWYC CGSDFKHKRSLKDH+KAFGNGH
Sbjct: 361 NCGKLWYCSCGSDFKHKRSLKDHVKAFGNGH 391

[Close]

BLAST of Carg03548 vs. Swiss-Prot
Match: sp|Q9FX68|ZWIP6_ARATH (Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.5e-81
Identity = 130/159 (81.76%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 93  KGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ-PTG 152
           +GQYWIP+ SQIL+GPTQFSC VC KTFNR+NNMQMHMWGHGSQYR+GPESLRGT+  + 
Sbjct: 83  QGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSS 142

Query: 153 MLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR-KCGKAFAVRGDW 212
           +LRLPCYCC+ GC+NNIDHPR+KPLKDFRTLQTHYKRKHG KPF CR KC K FAVRGDW
Sbjct: 143 ILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202

Query: 213 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           RTHEKNCGKLW+C+CGSDFKHKRSLKDH++AFG+GHAA+
Sbjct: 203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAH 241

[Close]

BLAST of Carg03548 vs. Swiss-Prot
Match: sp|Q8VWG3|TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 6.2e-80
Identity = 126/161 (78.26%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           + L+   YWIP P QILIG T FSC VCFKTFNRYNN+QMHMWGHGSQYR+GPESL+GTQ
Sbjct: 123 NELSGKAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQ 182

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           P  ML +PCYCC  GCRN+IDHPR+KPLKDFRTLQTHYKRKHG KPF CR CGK  AV+G
Sbjct: 183 PRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKG 242

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGK W C+CGSDFKHKRSLKDH+KAFG+GH  Y
Sbjct: 243 DWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPY 283

[Close]

BLAST of Carg03548 vs. TrEMBL
Match: tr|A0A1S3B791|A0A1S3B791_CUCME (zinc finger protein WIP2-like OS=Cucumis melo OX=3656 GN=LOC103486795 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 6.3e-106
Identity = 200/211 (94.79%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVC+KTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 145 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGP 204

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 205 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 264

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX
Sbjct: 265 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 324

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXXXXX          AYSEVEQDHD
Sbjct: 325 XXXXXXXXXXXQRFDNEEDDHAYSEVEQDHD 355

[Close]

BLAST of Carg03548 vs. TrEMBL
Match: tr|A0A0A0LEJ3|A0A0A0LEJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G810580 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.9e-102
Identity = 194/211 (91.94%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVC+KTFNRYNNMQMHMWGHGSQYRRGP
Sbjct: 146 SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGP 205

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 206 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 265

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNXXXXXXXXXXX 261
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHA   XXXXXXXXXXX
Sbjct: 266 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAXXXXXXXXXXXXXX 325

Query: 262 XXXXXXXXXXXXXXXXXXXXPAYSEVEQDHD 293
           XXXXXXXX             AYSEVEQDHD
Sbjct: 326 XXXXXXXXQRFDNEEDDH---AYSEVEQDHD 353

[Close]

BLAST of Carg03548 vs. TrEMBL
Match: tr|A0A2P6RDS9|A0A2P6RDS9_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0481001 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.8e-98
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 82  SGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGP 141
           +G  ++ S LNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYR+GP
Sbjct: 190 TGYPMNRSSLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGP 249

Query: 142 ESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 201
           ESLRGTQPTGMLRLPCYCC+PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG
Sbjct: 250 ESLRGTQPTGMLRLPCYCCTPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG 309

Query: 202 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY
Sbjct: 310 KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 357

[Close]

BLAST of Carg03548 vs. TrEMBL
Match: tr|A0A0D3BX84|A0A0D3BX84_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106340971 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 3.7e-98
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQ
Sbjct: 188 SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ 247

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG
Sbjct: 248 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 307

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH AY
Sbjct: 308 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAY 348

[Close]

BLAST of Carg03548 vs. TrEMBL
Match: tr|A0A178VLW5|A0A178VLW5_ARATH (WIP2 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g52250 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 8.3e-98
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 89  SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQ 148
           SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYR+GPESLRGTQ
Sbjct: 195 SRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ 254

Query: 149 PTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 208
           PTGMLRLPCYCC+PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG
Sbjct: 255 PTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 314

Query: 209 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY 250
           DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH AY
Sbjct: 315 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAY 355

The following BLAST results are available for this feature:

BLAST of Carg03548 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934659.1	7.3e-106	99.53	zinc finger protein WIP2-like [Cucurbita moschata]	[more]
XP_023528242.1	7.3e-106	99.53	zinc finger protein WIP2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008443097.1	9.6e-106	94.79	PREDICTED: zinc finger protein WIP2-like [Cucumis melo]	[more]
XP_022983017.1	6.2e-105	99.05	zinc finger protein WIP2-like [Cucurbita maxima]	[more]
XP_011652116.1	2.9e-102	91.94	PREDICTED: zinc finger protein WIP2-like [Cucumis sativus] >KGN59334.1 hypotheti...	[more]

BLAST of Carg03548 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57670.1	2.3e-101	98.14	C2H2-type zinc finger family protein	[more]
AT1G51220.1	2.8e-91	89.81	WIP domain protein 5	[more]
AT3G20880.1	3.1e-90	89.40	WIP domain protein 4	[more]
AT1G13290.1	1.4e-82	81.76	C2H2-like zinc finger protein	[more]
AT1G34790.1	3.4e-81	78.26	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Carg03548 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SVY1\|ZWIP2_ARATH	4.1e-100	98.14	Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1	[more]
sp\|Q8W031\|ZWIP5_ARATH	5.0e-90	89.81	Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1	[more]
sp\|Q8W030\|ZWIP4_ARATH	5.6e-89	89.40	Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1	[more]
sp\|Q9FX68\|ZWIP6_ARATH	2.5e-81	81.76	Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1	[more]
sp\|Q8VWG3\|TT1_ARATH	6.2e-80	78.26	Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1	[more]

BLAST of Carg03548 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B791\|A0A1S3B791_CUCME	6.3e-106	94.79	zinc finger protein WIP2-like OS=Cucumis melo OX=3656 GN=LOC103486795 PE=4 SV=1	[more]
tr\|A0A0A0LEJ3\|A0A0A0LEJ3_CUCSA	1.9e-102	91.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G810580 PE=4 SV=1	[more]
tr\|A0A2P6RDS9\|A0A2P6RDS9_ROSCH	2.8e-98	94.64	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A0D3BX84\|A0A0D3BX84_BRAOL	3.7e-98	98.76	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10634097...	[more]
tr\|A0A178VLW5\|A0A178VLW5_ARATH	8.3e-98	98.14	WIP2 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g52250 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf
IPR013087	Znf_C2H2_type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03548-RA	Carg03548-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..78
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 110..133 e-value: 2.4E-5 score: 26.1
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 154..244 e-value: 1.4E-6 score: 30.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..292
None	No IPR available	PANTHER	PTHR10593:SF98	ZINC FINGER PROTEIN WIP2	coord: 71..256
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 71..256
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 111..133 e-value: 0.38 score: 19.8 coord: 195..215 e-value: 49.0 score: 7.1
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 113..133
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 195..215 score: 8.808
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 111..138 score: 9.64
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 107..133
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 180..215

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03548	Csa3G810580	Cucumber (Chinese Long) v2	carcuB0276
Carg03548	MELO3C009657	Melon (DHL92) v3.5.1	carmeB0251
Carg03548	ClCG10G017270	Watermelon (Charleston Gray)	carwcgB0240
Carg03548	CSPI03G36790	Wild cucumber (PI 183967)	carcpiB0280
Carg03548	Cucsa.242970	Cucumber (Gy14) v1	carcgyB0294
Carg03548	CmaCh06G000800	Cucurbita maxima (Rimu)	carcmaB0349
Carg03548	CmaCh14G004400	Cucurbita maxima (Rimu)	carcmaB0343
Carg03548	CmoCh14G004470	Cucurbita moschata (Rifu)	carcmoB0347
Carg03548	CmoCh06G000720	Cucurbita moschata (Rifu)	carcmoB0350
Carg03548	Lsi03G017050	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03548	Cp4.1LG08g13880	Cucurbita pepo (Zucchini)	carcpeB0355
Carg03548	Cp4.1LG03g03640	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03548	CsGy3G034220	Cucumber (Gy14) v2	carcgybB0263
Carg03548	MELO3C009657.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03548	CsaV3_3G039140	Cucumber (Chinese Long) v3	carcucB0279
Carg03548	Cla97C10G200100	Watermelon (97103) v2	carwmbB0254
Carg03548	Bhi11G002225	Wax gourd	carwgoB0320

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03548	Carg01244	Silver-seed gourd	carcarB182

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03548	Silver-seed gourd	carcarB288
Carg03548	Cucurbita maxima (Rimu)	carcmaB0344
Carg03548	Watermelon (97103) v1	carwmB0237