Carg03331 (gene) Silver-seed gourd

NameCarg03331
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_005 : 1286608 .. 1287142 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCCATATCTTGCAAGCTTCCTAGTCTATCTACGCCGTTTGCTTCATCCTCTACTCTCTCGCCGACGAACATTTCTCGCTCCGAATCCTCTCCGGCAGAATCGTCGAAGAGAATCTCAATTTGGAGGCTCCATGCCACATCTGAGGAAACTTTGGCCTCGGAATCCGCCGCACTGGTGGAGAAATCGAAGGAGATAGTGTCCGGCGTTTCCACCGTAACATCTGTTCTTCTGTTTGTCGCGTTCATCGGTTTATCGATTCTCACGATTGGGGTAAAATCAATGCTCAGATTCGAATCTCGAAGCTGAATTTCCACTGTCACTAATTTCGTTTGTATAGCTGTTGATCTCATCTGTCTAATTAGGGTGTTTCCGGTCTCAGGTAATCTACATTGCTGTGACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTCGAGAAAGAGGAGGCGGCTAACAACAAGAAGAGTGGGAAAAGGAAGAAGATGAAAGCTAAAGCTGGATCGAAAGGATTCGGCCAGAAGATTGAT

mRNA sequence

ATGGCCACCGCCATATCTTGCAAGCTTCCTAGTCTATCTACGCCGTTTGCTTCATCCTCTACTCTCTCGCCGACGAACATTTCTCGCTCCGAATCCTCTCCGGCAGAATCGTCGAAGAGAATCTCAATTTGGAGGCTCCATGCCACATCTGAGGAAACTTTGGCCTCGGAATCCGCCGCACTGGTGGAGAAATCGAAGGAGATAGTGTCCGGCGTTTCCACCGTAACATCTGTTCTTCTGTTTGTCGCGTTCATCGGTTTATCGATTCTCACGATTGGGGTAATCTACATTGCTGTGACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTCGAGAAAGAGGAGGCGGCTAACAACAAGAAGAGTGGGAAAAGGAAGAAGATGAAAGCTAAAGCTGGATCGAAAGGATTCGGCCAGAAGATTGAT

Coding sequence (CDS)

ATGGCCACCGCCATATCTTGCAAGCTTCCTAGTCTATCTACGCCGTTTGCTTCATCCTCTACTCTCTCGCCGACGAACATTTCTCGCTCCGAATCCTCTCCGGCAGAATCGTCGAAGAGAATCTCAATTTGGAGGCTCCATGCCACATCTGAGGAAACTTTGGCCTCGGAATCCGCCGCACTGGTGGAGAAATCGAAGGAGATAGTGTCCGGCGTTTCCACCGTAACATCTGTTCTTCTGTTTGTCGCGTTCATCGGTTTATCGATTCTCACGATTGGGGTAATCTACATTGCTGTGACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTCGAGAAAGAGGAGGCGGCTAACAACAAGAAGAGTGGGAAAAGGAAGAAGATGAAAGCTAAAGCTGGATCGAAAGGATTCGGCCAGAAGATTGAT

Protein sequence

MATAISCKLPSLSTPFASSSTLSPTNISRSESSPAESSKRISIWRLHATSEETLASESAALVEKSKEIVSGVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEKFEKEEAANNKKSGKRKKMKAKAGSKGFGQKID
BLAST of Carg03331 vs. NCBI nr
Match: XP_023532311.1 (uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 0

Query: 6   SCKLPSLSTPFASSSTLSPTNISRSESSPA---ESSKRISIWRLHATSEETLASESAALV 65
           S KLPSL +  +S+S  S  N+SR   +       S+R SI RLHA SEETLASESAALV
Sbjct: 22  SYKLPSLRS--SSASFASSLNLSRRPVALVLIQNRSRRGSIRRLHAISEETLASESAALV 81

Query: 66  EKSKEIVS----GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREK-EXXXXXXXX 125
           EKS+EI S    GVST+ SVLLFVAFIGLS+LTIGVIYIAVTDFLQKREK  XXXXXXXX
Sbjct: 82  EKSQEIASTGDDGVSTIISVLLFVAFIGLSVLTIGVIYIAVTDFLQKREKXXXXXXXXXX 141

Query: 126 XXXXXXXXXXXKAKAGSKGFGQKID 143
           XXXXXXXXXX KA+AG +GFGQK++
Sbjct: 142 XXXXXXXXXXVKARAGPRGFGQKVE 164

BLAST of Carg03331 vs. NCBI nr
Match: XP_022148488.1 (uncharacterized protein LOC111017113 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-20
Identity = 104/165 (63.03%), Postives = 114/165 (69.09%), Query Frame = 0

Query: 1   MATAISCKLPSLSTP-FASSSTLSPTNISRSESS---------PA---------ESSKRI 60
           MAT IS    SLS P F S+    P    R  SS         PA          S++  
Sbjct: 1   MATTIS---TSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGN 60

Query: 61  SIWRLHATSEETLASESAALVEKSKEIVS----GVSTVTSVLLFVAFIGLSILTIGVIYI 120
           SI RLHATSE+TLASESAALVEKS+EI S    GVST+ S LLFVAFIGLSILTIGVIYI
Sbjct: 61  SIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYI 120

Query: 121 AVTDFLQKREKEXXXXXXXXXXXXXXXXXXXKAKAGSKGFGQKID 143
           AVTDFLQKREKEXXXXXXXXXXXXXXXX   +A+AG +GFGQKI+
Sbjct: 121 AVTDFLQKREKEXXXXXXXXXXXXXXXXKKVRARAGPRGFGQKIE 162

BLAST of Carg03331 vs. NCBI nr
Match: XP_023007015.1 (uncharacterized protein LOC111499635 [Cucurbita maxima])

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-20
Identity = 102/147 (69.39%), Postives = 113/147 (76.87%), Query Frame = 0

Query: 6   SCKLPSL---STPFASSSTLS--PTNISRSESSPAESSKRISIWRLHATSEETLASESAA 65
           S KLPSL   S  FASS  LS  P  +   ++ P    +R SI RLHA SEETLASESAA
Sbjct: 22  SYKLPSLRSSSASFASSFNLSRRPAALVLLQNRP----RRGSIRRLHAISEETLASESAA 81

Query: 66  LVEKSKEIVS----GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREK-EXXXXXX 125
           LVEKS+EI S    GVST+ SVLLFVAF+GLS+LTIGVIYIAVTDFLQKREK  XXXXXX
Sbjct: 82  LVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIYIAVTDFLQKREKXXXXXXXX 141

Query: 126 XXXXXXXXXXXXXKAKAGSKGFGQKID 143
           XXXXXXXXXXXXX AK G +GFGQK++
Sbjct: 142 XXXXXXXXXXXXXXAKTGPRGFGQKVE 164

BLAST of Carg03331 vs. NCBI nr
Match: XP_022947295.1 (uncharacterized protein LOC111451198 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = 0

Query: 6   SCKLPSL---STPFASSSTLS--PTNISRSESSPAESSKRISIWRLHATSEETLASESAA 65
           S KLPSL   S  FASS  LS  P  +   ++ P    +R SI RLHA SEETLASESAA
Sbjct: 22  SYKLPSLRSSSASFASSFNLSRRPAALVLIQNRP----RRGSIRRLHAVSEETLASESAA 81

Query: 66  LVEKSKEIVS----GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKRE-KEXXXXXX 125
           LVEKS+EI S    GVST+ SVLLFVAF+GLS+LTIGVIYIAVTDFLQKRE   XXXXXX
Sbjct: 82  LVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIYIAVTDFLQKREXXXXXXXXX 141

Query: 126 XXXXXXXXXXXXXKAKAGSKGFGQKID 143
           XXXXXXXXXXXXX   AG +GFGQK++
Sbjct: 142 XXXXXXXXXXXXXXXXAGPRGFGQKVE 164

BLAST of Carg03331 vs. NCBI nr
Match: XP_008464105.1 (PREDICTED: uncharacterized protein LOC103502067 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 91/141 (64.54%), Postives = 106/141 (75.18%), Query Frame = 0

Query: 11  SLSTPFASSSTLS--PTNISRSESSPAESSKRISIWRLH-ATSEETLASESAALV-EKSK 70
           S S PF SS+ LS  PT +           K++S   +H ATSE+TLAS+SAALV EKS+
Sbjct: 27  SSSPPFPSSTALSCRPT-LPLLNPLRQNRQKQLSFSSIHAATSEQTLASDSAALVAEKSQ 86

Query: 71  EIV-----SGVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEXXXXXXXXXXXX 130
           +IV      GVST+ SVLLF+AFIGLSILTIGVIYI VTDFLQKREK XXXXXXXXXXXX
Sbjct: 87  DIVGSTNDDGVSTIISVLLFIAFIGLSILTIGVIYIGVTDFLQKREKXXXXXXXXXXXXX 146

Query: 131 XXXXXXXKAKAGSKGFGQKID 143
           XXXXXXX A+ G +GFGQK++
Sbjct: 147 XXXXXXXXARDGPRGFGQKVE 166

BLAST of Carg03331 vs. TAIR10
Match: AT2G29180.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 39  KRISIWRLHATSEE------TLASESAALVEKSKEIVSGVSTVTSVLLFVAFIGLSILTI 98
           ++  +WR+ AT EE                        GV+ +  VLLFVAF+ L++LTI
Sbjct: 50  EKTQLWRVSATPEEISQEIXXXXXXXXXXXXXXXXXXXGVALIIQVLLFVAFLALTVLTI 109

Query: 99  GVIYIAVTDFLQKREKE-XXXXXXXXXXXXXXXXXXXKAKAGSKGFGQKID 143
           GV+YI VT+FL KRE+E                    +A+AG +GFGQKI+
Sbjct: 110 GVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQKIE 160

BLAST of Carg03331 vs. TrEMBL
Match: tr|A0A1S3CM77|A0A1S3CM77_CUCME (uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 91/141 (64.54%), Postives = 106/141 (75.18%), Query Frame = 0

Query: 11  SLSTPFASSSTLS--PTNISRSESSPAESSKRISIWRLH-ATSEETLASESAALV-EKSK 70
           S S PF SS+ LS  PT +           K++S   +H ATSE+TLAS+SAALV EKS+
Sbjct: 27  SSSPPFPSSTALSCRPT-LPLLNPLRQNRQKQLSFSSIHAATSEQTLASDSAALVAEKSQ 86

Query: 71  EIV-----SGVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEXXXXXXXXXXXX 130
           +IV      GVST+ SVLLF+AFIGLSILTIGVIYI VTDFLQKREK XXXXXXXXXXXX
Sbjct: 87  DIVGSTNDDGVSTIISVLLFIAFIGLSILTIGVIYIGVTDFLQKREKXXXXXXXXXXXXX 146

Query: 131 XXXXXXXKAKAGSKGFGQKID 143
           XXXXXXX A+ G +GFGQK++
Sbjct: 147 XXXXXXXXARDGPRGFGQKVE 166

BLAST of Carg03331 vs. TrEMBL
Match: tr|A0A059AGZ1|A0A059AGZ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02035 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 84/146 (57.53%), Postives = 99/146 (67.81%), Query Frame = 0

Query: 4   AISCKLPSLSTPFASSSTLSPTNISRSESS--PAESSKRISIWRLHATSEETLASESAAL 63
           A+  K  SLS P ASS + S        SS   +E + R  IWRL A +E+ L       
Sbjct: 96  ALPLKSASLSLPAASSISASSQRTVGGGSSLRASERNPRAGIWRLRAAAEDAL------- 155

Query: 64  VEKSKEIVS-----GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEXXXXXXX 123
            E S++IVS     GVSTV SVLL +AF+GLSILTIGV YIAVTDFLQKRE+EXXXXXXX
Sbjct: 156 -ETSEQIVSSGGDDGVSTVVSVLLLIAFVGLSILTIGVTYIAVTDFLQKREREXXXXXXX 215

Query: 124 XXXXXXXXXXXXKAKAGSKGFGQKID 143
           XXXXXXXXX   +A+AG +GFGQ+ID
Sbjct: 216 XXXXXXXXXGRVRARAGPRGFGQRID 233

BLAST of Carg03331 vs. TrEMBL
Match: tr|A0A0A0KFD7|A0A0A0KFD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190230 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-14
Identity = 95/162 (58.64%), Postives = 108/162 (66.67%), Query Frame = 0

Query: 11  SLSTPFA-SSSTLSPTNISRSESSP---------------------AESSKRISIWRLH- 70
           SLS P + SSS L PT   RS SSP                         K++SI R+H 
Sbjct: 8   SLSLPISLSSSNLLPT--LRSSSSPPFPFSTALFSRPTLPLLNPLRQNRQKQLSISRIHA 67

Query: 71  ATSEETLASESAALV--EKSKEIV-----SGVSTVTSVLLFVAFIGLSILTIGVIYIAVT 130
           ATS++TL S+SAAL+  EKS+EIV      GVST+ SVLLF AFIGLSILTIGVIYI VT
Sbjct: 68  ATSQQTLPSDSAALLAAEKSQEIVGSTNDDGVSTIISVLLFTAFIGLSILTIGVIYIGVT 127

Query: 131 DFLQKREKEXXXXXXXXXXXXXXXXXXXKAKAGSKGFGQKID 143
           DFLQKREK XXXXXXXXXXXXXXXXXXX    G +GFGQK++
Sbjct: 128 DFLQKREKXXXXXXXXXXXXXXXXXXXXXXXGGPRGFGQKVE 167

BLAST of Carg03331 vs. TrEMBL
Match: tr|A0A2I4HH26|A0A2I4HH26_9ROSI (uncharacterized protein LOC109017722 OS=Juglans regia OX=51240 GN=LOC109017722 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 81/137 (59.12%), Postives = 96/137 (70.07%), Query Frame = 0

Query: 13  STPFASSSTLSPTNISRSESSPAESSK-RISIWRLHATSE--ETLASESAALVEKSKEIV 72
           S PF S +  S    + S + P E ++    IWR+ A SE  + L  E+  L+E S+E+V
Sbjct: 31  SLPFTSQNVFSSKRTNLSHNLPREFTRPSTQIWRVSAASEGGDVLPIEATPLLENSQELV 90

Query: 73  S----GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEXXXXXXXXXXXXXXXX 132
           S    GVST+ S LLF+ FIGLS+LTIGVIYIAVTDFLQKRE  XXXXXXXXXXXXXXXX
Sbjct: 91  STSDDGVSTIISTLLFIGFIGLSVLTIGVIYIAVTDFLQKREXXXXXXXXXXXXXXXXXX 150

Query: 133 XXXKAKAGSKGFGQKID 143
           XXX  KAG KGFGQ+ D
Sbjct: 151 XXXXXKAGPKGFGQRTD 167

BLAST of Carg03331 vs. TrEMBL
Match: tr|A0A2N9HTA1|A0A2N9HTA1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43434 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 81/135 (60.00%), Postives = 96/135 (71.11%), Query Frame = 0

Query: 13  STPFASSSTLSPTNISRSESSPAESSKRISIWRLHATSE-ETLASESAALVEKSKEIVS- 72
           S PF S +T+  T I         + K   +WR++A SE E L  E   L E S+EIVS 
Sbjct: 31  SLPFTSQTTIKKT-ILLQNPLHITTQKSTKLWRIYAASEGEALPLEPTPL-ENSQEIVST 90

Query: 73  ---GVSTVTSVLLFVAFIGLSILTIGVIYIAVTDFLQKREKEXXXXXXXXXXXXXXXXXX 132
              GVST+ S LLF+AFIGLSILTIGVIYI+VTDFL+KRE E  XXXXXXXXXXXXXXXX
Sbjct: 91  SDDGVSTIISTLLFIAFIGLSILTIGVIYISVTDFLRKREGEKYXXXXXXXXXXXXXXXX 150

Query: 133 XKAKAGSKGFGQKID 143
           X+++AG +GFGQKID
Sbjct: 151 XRSRAGPRGFGQKID 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023532311.11.0e-2069.66uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo][more]
XP_022148488.15.1e-2063.03uncharacterized protein LOC111017113 [Momordica charantia][more]
XP_023007015.15.1e-2069.39uncharacterized protein LOC111499635 [Cucurbita maxima][more]
XP_022947295.11.3e-1868.03uncharacterized protein LOC111451198 [Cucurbita moschata][more]
XP_008464105.13.8e-1564.54PREDICTED: uncharacterized protein LOC103502067 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT2G29180.11.1e-0836.04unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CM77|A0A1S3CM77_CUCME2.5e-1564.54uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=... [more]
tr|A0A059AGZ1|A0A059AGZ1_EUCGR1.2e-1457.53Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02035 PE=4 SV... [more]
tr|A0A0A0KFD7|A0A0A0KFD7_CUCSA6.2e-1458.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190230 PE=4 SV=1[more]
tr|A0A2I4HH26|A0A2I4HH26_9ROSI1.1e-1359.12uncharacterized protein LOC109017722 OS=Juglans regia OX=51240 GN=LOC109017722 P... [more]
tr|A0A2N9HTA1|A0A2N9HTA1_FAGSY1.8e-1360.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43434 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03331-RACarg03331-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..142
NoneNo IPR availablePANTHERPTHR36735FAMILY NOT NAMEDcoord: 8..142

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03331Carg26583Silver-seed gourdcarcarB365