Carg02990 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02990
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	31 kDa ribonucleoprotein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_008 : 1201976 .. 1205002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAAAAAAATAAAATAAAAAATATATATGGCTTAGTGCCGCACCCGCTAAAATATCCAGATATTCCATCCGAAACGTCGTCGTTTTAAGCCTTTTCTGAGCTCCCTTATCCAATATTAATAACCCACGGCGTAGCTCTGTGTTGCTTTTCAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGGTATGTAACTTCATTTTATTTCTATTGCCATTTCTGTTTGACGCATTTGGTTTATTGCGGATTTATGATCGGTCTTTTTCTCTCAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGTAAGCAGGATGTCGTTTTTCTTAGCTTGATCATTTTTCGTTTGTCTCATTGTGTTCAAGTTCGTACCCGAGGCTTAGAACAGTGTTTACCTTTCACCATGGAAGAATAGTCGTAATAGCAATTGAATGCGTTTGAATTAAGGAATAGTTTGATTTGCTTGTGTGAGATGGAACGTGAGATCCCACTTCGGTTGGAGAGGGGAACAAACATTCTTTGTAAGGGTGTTGAAACCTCTCCACGCGTTTTAAAAACCGTGAGACTGACGGCAATACGTAACGGAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAACGGACAATATTCACTAGCGGTGGGCTTGGACTGTTACAAATAGTATCAGAGCCCGGGTGGTGTGCCAGTGAGGACGATAACTCCCAAGGGGGTGGGTTGTGAGATCCCACATCTGTTGGAGAGGGAAACGAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAATAGAAGTGTTTTAAAAATTGTGAGGTTGACGGCGATACGTAACGGGCCAAAGCGGACAATATCTACTAGCGATGGGCTTGGGCTGTTACATGGAAAAATTGATGAACCGGAAGAACTCAATTATAAATTTGCATCCTGCTTGTGTCCAGTGTGTTGCAGTTTCTTTTAAATTTTGCTTCTTTAGTGCTTTTGAATATATTACAAGGGAACAAGTTATTGACTAAAATTTTTCAGTTCTCCTTGTCACTATGGGTTGAAGCAAAGTACATGGCCTTTCCATTCATTTCAAAACTTTTATGATGAATCTTCTGATGCATTTGGCTCTCACTCCCAATTATTGCAGGTGTTTATGGGCAATGCCCATGTCCTTTCGAACTCTTGTTGGCTTTTTATTGAATGAAATAGTTCACATGAATGCAGGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGGTAATTTCAGTATATTGCTACCACAATTTTTAAATGAATAGCCATAGAATCATTAAAATGTGAGTATCAGCATTCTTATGGTTCTTCATCTGCTGAAATGCAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAAATTCAGAAGCCTCTCACTGGAGGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTTTCTTGTTCTCTATCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAACACATCACTTTCCCTTTTCTTTTACCTATAAATCTCCTACCTCTAATGTTTAGATGATTCAAAGTTGGATACCCCAACAAAAAACGCTCATTAGATCATTTACTGTATCCTTTTCTCTATATGAAGTCTTAATGGTGATTTATCAATGCACGTTAATGTAATTGAGTTTAGCATTTAGTTAATGAATGAATACAAATGAACTAGGTTTTATAGTTGAATTGGCATCTTATGACTGTTTAGGTTCGAGGGGAGTTATTCCATTGCATAGTCACAGTATTGTATTGATTCAAGAACAAAGGACAATCAGTGCAATTTGATCCATGCGTGTTTGCTTTACATAGATAGGTGGGTGGAGAAAGCAATCCCAAAATGAATTTTTGTTCATGTGTACTATATTGCATGATCTCAGCATTGTACTTGCATTCACATTCATGTGTACTATATTTCATAATTGAGAACATTGAAGGACAACTTGTACAATTTGATTCTTTTTCTTTAAATTGACAAGTGTTTGGTGGGGTGGGGAGGAACAATTCCTCCATCTTTTCTCATTCATTTGTGCTATATTTTGCATAATCACAGGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAG

mRNA sequence

TAGAAAAAAAATAAAATAAAAAATATATATGGCTTAGTGCCGCACCCGCTAAAATATCCAGATATTCCATCCGAAACGTCGTCGTTTTAAGCCTTTTCTGAGCTCCCTTATCCAATATTAATAACCCACGGCGTAGCTCTGTGTTGCTTTTCAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAAATTCAGAAGCCTCTCACTGGAGGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTTTCTTGTTCTCTATCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAACACATCACTTTCCCTTTTCTTTTACCTATAAATCTCCTACCTCTAATGTTTAGATGATTCAAAGTTGGATACCCCAACAAAAAACGCTCATTAGATCATTTACTGTATCCTTTTCTCTATATGAAGTCTTAATGGTGATTTATCAATGCACGTTAATGTAATTGAGTTTAGCATTTAGTTAATGAATGAATACAAATGAACTAGGTTTTATAGTTGAATTGGCATCTTATGACTGTTTAGGTTCGAGGGGAGTTATTCCATTGCATAGTCACAGTATTGTATTGATTCAAGAACAAAGGACAATCAGTGCAATTTGATCCATGCGTGTTTGCTTTACATAGATAGGTGGGTGGAGAAAGCAATCCCAAAATGAATTTTTGTTCATGTGTACTATATTGCATGATCTCAGCATTGTACTTGCATTCACATTCATGTGTACTATATTTCATAATTGAGAACATTGAAGGACAACTTGTACAATTTGATTCTTTTTCTTTAAATTGACAAGTGTTTGGTGGGGTGGGGAGGAACAATTCCTCCATCTTTTCTCATTCATTTGTGCTATATTTTGCATAATCACAGGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAG

Coding sequence (CDS)

ATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAA

Protein sequence

MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAEV

Homology

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 573.2 bits (1476), Expect = 5.3e-160
Identity = 299/301 (99.34%), Postives = 299/301 (99.34%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSSLFLRSNQQNLVFISPLS PQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_023535968.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.2 bits (1463), Expect = 1.7e-158
Identity = 296/301 (98.34%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSSLFLRSNQQNLVFISPLS PQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTST+GVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTEGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_022975867.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 558.5 bits (1438), Expect = 1.4e-155
Identity = 291/301 (96.68%), Postives = 294/301 (97.67%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSS LFLRSNQQNLVFI+PLS  QNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRTRKFVFQLASTSQDDA+ASSSSDAEEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEE SQS+DTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 494.6 bits (1272), Expect = 2.4e-136
Identity = 258/301 (85.71%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS Q + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_004136268.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_3G889940 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 3.3e-133
Identity = 254/301 (84.39%), Postives = 270/301 (89.70%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS   + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           +PL SIRAKRT  FVFQ ASTSQD+AV SS SD EEFS+ RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 300

[Close]

BLAST of Carg02990 vs. TAIR10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-68
Identity = 129/202 (63.86%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 98  SRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAV 157
           S+ RL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  A+
Sbjct: 92  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 151

Query: 158 NNLESYEFGGRTLKLNYAKVKKEKP-SPPVKPNPV-TFNLFVANLPFDARAKDLREFFDS 217
            +LES E+ GR LK++YAK KK+K  +P   P+PV TFNLFVANL F+ARAK L+EFFD+
Sbjct: 152 KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 211

Query: 218 GSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVK 277
            +GNVVS ++IFHENPRRSSGYGFV+FKTKK AEAA+ EFQGK+F+GR +R+A+SKQFVK
Sbjct: 212 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 271

Query: 278 L-------PSEEKSQSEDTSTD 291
           L       P EE+++ E + ++
Sbjct: 272 LQAKEGLQPPEEEAEEEPSQSE 293

[Close]

BLAST of Carg02990 vs. TAIR10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 74/194 (38.14%), Postives = 111/194 (57.22%), Query Frame = 0


Query: 99  RNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVN 158
           + +L   N+PW  +  DI  LF + GTV +VE+      +NRG AFVTM S EEA AA++
Sbjct: 94  KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAID 153

Query: 159 NLESYEFGGRTLKLNYA-KVKKEKPS-----PPVKPNPVTFNLFVANLPFDARAKDLREF 218
             ++++  GR + +++A + KK  P      P   P      L+V+NL + AR+  LRE 
Sbjct: 154 KFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLREL 213

Query: 219 FDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQ 278
           F +   N VSA+++F +   RSSGYGFV+F T+++AE AI++  GK  MGR +       
Sbjct: 214 FTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPIT------ 273

Query: 279 FVKLPSEEKSQSED 287
            +K      S+SED
Sbjct: 274 -LKFSLRSASESED 280

[Close]

BLAST of Carg02990 vs. TAIR10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-24
Identity = 68/211 (32.23%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKI--RNRGLAFVTMGSPEEALAAVN 160
           RL   N+P+  T  ++  +F + GTVVDV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 161 NLESYEFGGRTLKLNYAKV----KKEKPSPPVKPNPVTF-----NLFVANLPFDARAKDL 220
              S + GGRT+K+N+ +V    + E     ++ N  ++      ++  NL ++  ++ L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 221 REFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV-- 280
           ++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GR+LR+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 296

Query: 281 --ARSKQFVKLPSEEKSQSEDTSTDGVELAS 297
              R K  V  PS E+ ++E+ S +  E+ S
Sbjct: 297 ASEREKPTVSPPSVEEGETEEASLESNEVLS 325

[Close]

BLAST of Carg02990 vs. TAIR10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-21
Identity = 57/169 (33.73%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 160
           +L   N+P+D   + +  LFE+ GT V++   +YN+   ++RG  FVTM + EEA  AV 
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 173

Query: 161 NLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 220
              S+E  GR L +N A  +  +P    +     F ++V NLP+D  +  L   F S  G
Sbjct: 174 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHG 233

Query: 221 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 268
            VV A+++      RS G+GFV    + +   AI+   G+N  GR+++V
Sbjct: 234 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280

[Close]

BLAST of Carg02990 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 98.2 bits (243), Expect = 9.1e-21
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 160
           +L   N+ +D   + +  LFE+ GTV   E+ +YN+   ++RG  FVTM S +EA  AV 
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRGFGFVTMSSVDEAETAVE 210

Query: 161 NLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 220
               Y+  GR L +N A  +  +P    +     F ++V NLP+D     L + F S  G
Sbjct: 211 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHG 270

Query: 221 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 268
            VV A++++     RS G+GFV      +   AIS   G+N  GR++RV
Sbjct: 271 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317

[Close]

BLAST of Carg02990 vs. Swiss-Prot
Match: sp|Q39061|CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.2e-23
Identity = 68/211 (32.23%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKI--RNRGLAFVTMGSPEEALAAVN 160
           RL   N+P+  T  ++  +F + GTVVDV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 161 NLESYEFGGRTLKLNYAKV----KKEKPSPPVKPNPVTF-----NLFVANLPFDARAKDL 220
              S + GGRT+K+N+ +V    + E     ++ N  ++      ++  NL ++  ++ L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 221 REFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV-- 280
           ++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GR+LR+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 296

Query: 281 --ARSKQFVKLPSEEKSQSEDTSTDGVELAS 297
              R K  V  PS E+ ++E+ S +  E+ S
Sbjct: 297 ASEREKPTVSPPSVEEGETEEASLESNEVLS 325

[Close]

BLAST of Carg02990 vs. Swiss-Prot
Match: sp|Q9FGS0|CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.5e-20
Identity = 57/169 (33.73%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 160
           +L   N+P+D   + +  LFE+ GT V++   +YN+   ++RG  FVTM + EEA  AV 
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 173

Query: 161 NLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 220
              S+E  GR L +N A  +  +P    +     F ++V NLP+D  +  L   F S  G
Sbjct: 174 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHG 233

Query: 221 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 268
            VV A+++      RS G+GFV    + +   AI+   G+N  GR+++V
Sbjct: 234 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280

[Close]

BLAST of Carg02990 vs. Swiss-Prot
Match: sp|P19682|ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-20
Identity = 61/188 (32.45%), Postives = 102/188 (54.26%), Query Frame = 0


Query: 88  ASSSSDAEEFSRN-RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAF 147
           A  + + +E S + +L   N+P+D   E +  LF++ G VV++   +YN+   R+RG  F
Sbjct: 84  AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGF 143

Query: 148 VTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDA 207
           VTM + EEA  AV     Y+  GR L +N A  +  +P    +    T+ ++V N+P+D 
Sbjct: 144 VTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDI 203

Query: 208 RAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRS 267
               L + F S  G VVSA+++F     RS G+GFV   ++ +   AI+   G+   GR+
Sbjct: 204 DDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 263

Query: 268 LRVARSKQ 273
           +RV  +++
Sbjct: 264 IRVNAAEE 269

[Close]

BLAST of Carg02990 vs. Swiss-Prot
Match: sp|P19683|ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-20
Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 160
           +L   N+P+D   E +  LFE+ G VV++   +YN+   ++RG  FVTM + EEA  AV 
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 196

Query: 161 NLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 220
               Y+  GR L +N A  + E+P  P +    ++ ++V N+P+      L + F S  G
Sbjct: 197 MYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF-SEHG 256

Query: 221 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 268
            VVSA++++     RS G+GFV   ++ +   AI+   G++  GR++RV
Sbjct: 257 KVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of Carg02990 vs. Swiss-Prot
Match: sp|Q04836|CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 0


Query: 101 RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAFVTMGSPEEALAAVN 160
           +L   N+ +D   + +  LFE+ GTV   E+ +YN+   ++RG  FVTM S +EA  AV 
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRGFGFVTMSSVDEAETAVE 210

Query: 161 NLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSG 220
               Y+  GR L +N A  +  +P    +     F ++V NLP+D     L + F S  G
Sbjct: 211 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHG 270

Query: 221 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV 268
            VV A++++     RS G+GFV      +   AIS   G+N  GR++RV
Sbjct: 271 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317

[Close]

BLAST of Carg02990 vs. TrEMBL
Match: tr|A0A1S3CS17|A0A1S3CS17_CUCME (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.6e-136
Identity = 258/301 (85.71%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS Q + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. TrEMBL
Match: tr|A0A0A0LEN0|A0A0A0LEN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 2.2e-133
Identity = 254/301 (84.39%), Postives = 270/301 (89.70%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS   + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           +PL SIRAKRT  FVFQ ASTSQD+AV SS SD EEFS+ RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 300

[Close]

BLAST of Carg02990 vs. TrEMBL
Match: tr|A0A2I4GQJ7|A0A2I4GQJ7_9ROSI (28 kDa ribonucleoprotein, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109009951 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 171/278 (61.51%), Postives = 211/278 (75.90%), Query Frame = 0


Query: 37  SNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQD---DAVASSSSD 96
           SN     L  S + S L      H    S +AKR R FV   +ST+Q+   D+V++ S D
Sbjct: 27  SNTIAYNLPFSCALSPLSHPSPAHTHTLSAKAKRVRNFVLYFSSTAQEQALDSVSAQSDD 86

Query: 97  A-----EEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMG 156
           +     EEFSR RL+AQNVPW  T EDIR+LFEK+GTV+DVELSM+NK +NRGLAFVTMG
Sbjct: 87  SEPAPTEEFSRTRLIAQNVPWTCTVEDIRALFEKHGTVLDVELSMHNKTKNRGLAFVTMG 146

Query: 157 SPEEALAAVNNLESYEFGGRTLKLNYAKVKKEK--PSPPVKPNPVTFNLFVANLPFDARA 216
           SPEEA  A+NNL SYE  GRT+K+NYAK +K++  PSPPV+PNPVTFNLFVANLPF+AR+
Sbjct: 147 SPEEARMALNNLVSYELEGRTIKVNYAKARKKRPSPSPPVQPNPVTFNLFVANLPFEARS 206

Query: 217 KDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLR 276
           KDLREFF SGSG+VVSAQ+IFH++PR+SSGYGFVAFK+KKDA+ A+  FQGK FMGR +R
Sbjct: 207 KDLREFF-SGSGDVVSAQVIFHDSPRKSSGYGFVAFKSKKDADEALPAFQGKMFMGRPIR 266

Query: 277 VARSKQFVKLPSEEKSQSEDTSTD----GVELASAAAE 301
           VARS+Q+VKL +EE ++S DTS +     VE A +A E
Sbjct: 267 VARSRQYVKLRAEEGAESVDTSIESTPSSVEHADSANE 303

[Close]

BLAST of Carg02990 vs. TrEMBL
Match: tr|A0A2P4JYU4|A0A2P4JYU4_QUESU (28 kDa ribonucleoprotein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23533 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 145/198 (73.23%), Postives = 178/198 (89.90%), Query Frame = 0


Query: 93  DAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEE 152
           + EEFSR+RL+AQNVPW  T ED+R+LFEK+GTV+DVELSM+NK++NRGLAFVTMGSPEE
Sbjct: 91  ETEEFSRDRLIAQNVPWSCTAEDVRTLFEKHGTVLDVELSMHNKVKNRGLAFVTMGSPEE 150

Query: 153 ALAAVNNLESYEFGGRTLKLNYAKVKKEKPS-PPVKPNPVTFNLFVANLPFDARAKDLRE 212
           AL A+NNL+SYEF GRTLK+NYA+ +K+KPS PPV+P P+TFNLFVANLPF+AR+KDLRE
Sbjct: 151 ALTALNNLDSYEFEGRTLKINYARARKKKPSPPPVQPKPLTFNLFVANLPFEARSKDLRE 210

Query: 213 FFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSK 272
           FF S + ++VSAQ+IFHENPR+SSGYGFVAFK KKDA+ A+S FQGK FMGR +R+ARS+
Sbjct: 211 FFGSENSSLVSAQVIFHENPRKSSGYGFVAFKYKKDADEALSSFQGKIFMGRPIRIARSR 270

Query: 273 QFVKLPSEEKSQSEDTST 290
           QFVKL +EE ++S DTST
Sbjct: 271 QFVKLRAEENAESGDTST 288

[Close]

BLAST of Carg02990 vs. TrEMBL
Match: tr|A0A2P5F1H4|A0A2P5F1H4_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_126770 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.5e-78
Identity = 173/309 (55.99%), Postives = 219/309 (70.87%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M L+R   S S+ FL   +      +PLS+P N  +S      +S+S S  SLF  PL H
Sbjct: 1   MALLRFLSSPSTTFLPIERHP---FTPLSFPNNSPHS------ISVSCSLPSLF--PLSH 60

Query: 61  NPLASIRAKRTRK----FVFQLASTSQDDAVASSS--------------SDAEEFSRNRL 120
                +   RT++    F+   +ST+Q+ A+ SSS              SD+EE  ++RL
Sbjct: 61  TKSRRLPVSRTKRDSANFLLHFSSTTQEQALDSSSPVSISSEAGEFESDSDSEEVLKDRL 120

Query: 121 LAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLES 180
            AQNVPW++T EDIR+LFEKYGTVVDVELSMYNK RNRGLAFVTMGSPEEAL A+NNL+S
Sbjct: 121 YAQNVPWNATTEDIRALFEKYGTVVDVELSMYNKTRNRGLAFVTMGSPEEALTALNNLQS 180

Query: 181 YEFGGRTLKLNYAKVKKEKPSPPVKPNP-VTFNLFVANLPFDARAKDLREFFDSGSGNVV 240
           YE  GR +K++YA+ +K+K + PV+P P VTFNLFVANL ++ARAKDLREFF+S   +VV
Sbjct: 181 YELEGRIIKIDYARPRKKKVATPVQPKPEVTFNLFVANLSYEARAKDLREFFNSEGHSVV 240

Query: 241 SAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEK 291
           SA++IFHENPRRS GYGFV+FK+KK+AE A+S  QGK FMGR +RVARSKQFVK P  E 
Sbjct: 241 SAEVIFHENPRRSLGYGFVSFKSKKEAETALSAIQGKIFMGRPIRVARSKQFVKQPITES 298

The following BLAST results are available for this feature:

BLAST of Carg02990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937168.1	5.3e-160	99.34	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023535968.1	1.7e-158	98.34	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022975867.1	1.4e-155	96.68	28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]
XP_008466190.1	2.4e-136	85.71	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
XP_004136268.1	3.3e-133	84.39	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1...	[more]

BLAST of Carg02990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09040.1	2.0e-68	63.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	1.3e-30	38.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.3e-24	32.23	chloroplast RNA-binding protein 33	[more]
AT5G50250.1	1.4e-21	33.73	chloroplast RNA-binding protein 31B	[more]
AT4G24770.1	9.1e-21	34.32	31-kDa RNA binding protein	[more]

BLAST of Carg02990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39061\|CP33_ARATH	4.2e-23	32.23	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
sp\|Q9FGS0\|CP31B_ARATH	2.5e-20	33.73	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
sp\|P19682\|ROC3_NICSY	4.3e-20	32.45	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
sp\|P19683\|ROC4_NICSY	5.6e-20	33.73	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
sp\|Q04836\|CP31A_ARATH	1.6e-19	34.32	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]

BLAST of Carg02990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CS17\|A0A1S3CS17_CUCME	1.6e-136	85.71	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
tr\|A0A0A0LEN0\|A0A0A0LEN0_CUCSA	2.2e-133	84.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
tr\|A0A2I4GQJ7\|A0A2I4GQJ7_9ROSI	2.8e-80	61.51	28 kDa ribonucleoprotein, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109...	[more]
tr\|A0A2P4JYU4\|A0A2P4JYU4_QUESU	1.2e-78	73.23	28 kDa ribonucleoprotein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23533...	[more]
tr\|A0A2P5F1H4\|A0A2P5F1H4_9ROSA	1.5e-78	55.99	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_126770 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02990-RA	Carg02990-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..268 e-value: 3.2E-22 score: 89.8 coord: 101..173 e-value: 2.3E-17 score: 73.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..266 e-value: 9.2E-18 score: 63.7 coord: 105..171 e-value: 1.0E-14 score: 53.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..272 score: 18.24
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..177 score: 16.773
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 65..180 e-value: 1.6E-21 score: 78.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 181..288 e-value: 5.1E-24 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..301
None	No IPR available	PANTHER	PTHR45516	FAMILY NOT NAMED	coord: 56..291
None	No IPR available	CDD	cd00590	RRM_SF	coord: 106..173 e-value: 1.26102E-18 score: 76.9601
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 89..184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 182..275

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02990	Cla023036	Watermelon (97103) v1	carwmB0634
Carg02990	Csa3G889940	Cucumber (Chinese Long) v2	carcuB0655
Carg02990	MELO3C003546	Melon (DHL92) v3.5.1	carmeB0631
Carg02990	ClCG11G014360	Watermelon (Charleston Gray)	carwcgB0610
Carg02990	CSPI03G45310	Wild cucumber (PI 183967)	carcpiB0665
Carg02990	Cucsa.311720	Cucumber (Gy14) v1	carcgyB0712
Carg02990	CmaCh01G016290	Cucurbita maxima (Rimu)	carcmaB0894
Carg02990	CmaCh09G005800	Cucurbita maxima (Rimu)	carcmaB0889
Carg02990	CmoCh01G016750	Cucurbita moschata (Rifu)	carcmoB0870
Carg02990	CmoCh09G005640	Cucurbita moschata (Rifu)	carcmoB0865
Carg02990	Lsi04G022590	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02990	Cp4.1LG02g05280	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02990	Cp4.1LG06g04170	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02990	CsGy3G042790	Cucumber (Gy14) v2	carcgybB0632
Carg02990	MELO3C003546.2	Melon (DHL92) v3.6.1	carmedB0640
Carg02990	CsaV3_3G047760	Cucumber (Chinese Long) v3	carcucB0666
Carg02990	Cla97C11G220360	Watermelon (97103) v2	carwmbB0656
Carg02990	Bhi09G002093	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02990	Silver-seed gourd	carcarB066
Carg02990	Silver-seed gourd	carcarB424
Carg02990	Cucumber (Gy14) v2	carcgybB0629
Carg02990	Cucumber (Gy14) v1	carcgyB0707
Carg02990	Cucurbita maxima (Rimu)	carcmaB0892
Carg02990	Cucurbita maxima (Rimu)	carcmaB0900
Carg02990	Cucurbita moschata (Rifu)	carcmoB0868
Carg02990	Cucurbita moschata (Rifu)	carcmoB0877
Carg02990	Cucurbita pepo (Zucchini)	carcpeB0894
Carg02990	Cucurbita pepo (Zucchini)	carcpeB0907
Carg02990	Wild cucumber (PI 183967)	carcpiB0662
Carg02990	Cucumber (Chinese Long) v2	carcuB0652
Carg02990	Cucumber (Chinese Long) v3	carcucB0663
Carg02990	Bottle gourd (USVL1VR-Ls)	carlsiB579
Carg02990	Melon (DHL92) v3.5.1	carmeB0630
Carg02990	Melon (DHL92) v3.6.1	carmedB0639
Carg02990	Watermelon (Charleston Gray)	carwcgB0617
Carg02990	Watermelon (97103) v1	carwmB0627
Carg02990	Watermelon (97103) v2	carwmbB0655
Carg02990	Watermelon (97103) v2	carwmbB0664
Carg02990	Wax gourd	carwgoB0749
Carg02990	Wax gourd	carwgoB0751