Carg02918 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02918
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Aspartate-tRNA ligase
Location	Cucurbita_argyrosperma_scaffold_008 : 800015 .. 800944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGCCATGATAACCCAACTTACAGTAACTCATTTGATGTCTTTATTCGAGGTATACATTAAATATTGTTTCATCACTATAAGTGTCTTGCTGGTGCTTATTCTTCTCTATCATTTTATGTAACAAAATTTTCTAATATATGATCCATGATAAGTAACTTAAAACTTTGTTGTTCCCGCAGGGGAAGAAATCATTTCTGGGGCTCAGCGTGTTCACGTGCCAGAATTTCTTGCAGAACGCGCTCAAGCATGTGGGATCGATGTAAAAACCATAGAAACTTACATCGATTCGTTTAGGTATGTTTCTCTTATGCTTTTGTTTTCTCTTCCCCTTTACTCGAAGTTGAAATTTAACCGAATAAACGAAATTTAACTGTGATGGCAACGTCTTGATGGGGTTTTCCTTTACGTGCAATGCTTTCATTGCAGGTATGGCGCTCCCCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTAGTGATGCTTTTTTGTGGTTTGAATAACATTCGGAAAACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAGAATTGCACCAGTAATAATGTAATTCCAGTTTTTGAAATTGACATTTTGTTGCCTCTTTCGCACTTCATAGGGAAAATATGAATTTCAGATCTCTGCAGGATGGTGTATTGAATACAATTGTTTGCAACGTTATAATGCAAAGTTTGTTTTGACCAGCGTCATTTGATTTAGATTTTTATTACAGTTTTGCCACACTTGTTTGGTTGAAGAAGGATGGTAGAACTCTTCAATAATGACGACTGTTCTCCTGTGATGGTGTGTGGAAGGAGAGATTAGAGAGGCGGCCTAACCTAGGATAACCGGTCAAACCTACCGATAGCTCTGTTATCTTTTTTAAACTTTTCTTTTCGAGCATATTCTTTAAACTTTTC

mRNA sequence

ATGCCTTGCCATGATAACCCAACTTACAGTAACTCATTTGATGTCTTTATTCGAGGGGAAGAAATCATTTCTGGGGCTCAGCGTGTTCACGTGCCAGAATTTCTTGCAGAACGCGCTCAAGCATGTGGGATCGATGTAAAAACCATAGAAACTTACATCGATTCGTTTAGGTATGGCGCTCCCCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTAGTGATGCTTTTTTGTGGTTTGAATAACATTCGGAAAACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAGAATTGCACCAGTAATAATGTAATTCCAGTTTTTGAAATTGACATTTTGTTGCCTCTTTCGCACTTCATAGGGAAAATATGAATTTCAGATCTCTGCAGGATGGTGTATTGAATACAATTGTTTGCAACGTTATAATGCAAAGTTTGTTTTGACCAGCGTCATTTGATTTAGATTTTTATTACAGTTTTGCCACACTTGTTTGGTTGAAGAAGGATGGTAGAACTCTTCAATAATGACGACTGTTCTCCTGTGATGGTGTGTGGAAGGAGAGATTAGAGAGGCGGCCTAACCTAGGATAACCGGTCAAACCTACCGATAGCTCTGTTATCTTTTTTAAACTTTTCTTTTCGAGCATATTCTTTAAACTTTTC

Coding sequence (CDS)

ATGCCTTGCCATGATAACCCAACTTACAGTAACTCATTTGATGTCTTTATTCGAGGGGAAGAAATCATTTCTGGGGCTCAGCGTGTTCACGTGCCAGAATTTCTTGCAGAACGCGCTCAAGCATGTGGGATCGATGTAAAAACCATAGAAACTTACATCGATTCGTTTAGGTATGGCGCTCCCCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTAGTGATGCTTTTTTGTGGTTTGAATAACATTCGGAAAACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAG

Protein sequence

MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP

Homology

[Close]

BLAST of Carg02918 vs. NCBI nr
Match: XP_022976148.1 (aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA
Sbjct: 448 MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 507

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP
Sbjct: 508 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545

[Close]

BLAST of Carg02918 vs. NCBI nr
Match: XP_023535979.1 (aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA
Sbjct: 448 MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 507

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP
Sbjct: 508 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545

[Close]

BLAST of Carg02918 vs. NCBI nr
Match: XP_022138313.1 (aspartate--tRNA ligase 2, cytoplasmic [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 5.9e-52
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGI+VKTIETYIDSFRYGA
Sbjct: 443 MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIEVKTIETYIDSFRYGA 502

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP
Sbjct: 503 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 540

[Close]

BLAST of Carg02918 vs. NCBI nr
Match: XP_022936995.1 (aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 5.9e-52
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFL ERAQACGIDVKTIETYIDSFRYGA
Sbjct: 448 MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLTERAQACGIDVKTIETYIDSFRYGA 507

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP
Sbjct: 508 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545

[Close]

BLAST of Carg02918 vs. NCBI nr
Match: XP_018845710.1 (PREDICTED: aspartate--tRNA ligase 2, cytoplasmic [Juglans regia])

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPC DNPTYSNSFDVFIRGEEIISGAQRVHVPEFL ERAQACGIDVKTI TYIDSFRYGA
Sbjct: 461 MPCFDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLVERAQACGIDVKTISTYIDSFRYGA 520

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP RIAP
Sbjct: 521 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 558

[Close]

BLAST of Carg02918 vs. TAIR10
Match: AT4G31180.1 (Class II aminoacyl-tRNA and biotin synthetases superfamily protein)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-47
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           M C DNP YSNSFDVFIRGEEIISGAQRVH+PE L +RA  CGIDVKTI TYIDSFRYGA
Sbjct: 461 MTCADNPLYSNSFDVFIRGEEIISGAQRVHIPEVLEQRAGECGIDVKTISTYIDSFRYGA 520

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           P HGGFGVGLERVVMLFC LNNIRKTSLFPRDPQR++P
Sbjct: 521 PLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQRLSP 558

[Close]

BLAST of Carg02918 vs. TAIR10
Match: AT4G26870.1 (Class II aminoacyl-tRNA and biotin synthetases superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.8e-43
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MP  ++  YSNSFDVFIRGEEI+SGAQR+H PE L +RA+ CGIDVKTI TYID+FRYGA
Sbjct: 435 MPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPELLEKRARECGIDVKTISTYIDAFRYGA 494

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVML C LNNIRKTSLFPRD QR+ P
Sbjct: 495 PPHGGFGVGLERVVMLLCALNNIRKTSLFPRDSQRLTP 532

[Close]

BLAST of Carg02918 vs. TAIR10
Match: AT5G56680.1 (Class II aminoacyl-tRNA and biotin synthetases superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-12
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFI-RGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYG 60
           M  +D+     + DV + +  E+I G+QR    + + +R +  G+ ++  E Y+D  RYG
Sbjct: 474 MRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLDLRRYG 533

Query: 61  APPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 94
              H GFG+G ER+++   GL+NIR    FPR P
Sbjct: 534 TVKHCGFGLGFERMILFATGLDNIRDVIPFPRYP 567

[Close]

BLAST of Carg02918 vs. TAIR10
Match: AT1G70980.1 (Class II aminoacyl-tRNA and biotin synthetases superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-12
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFI-RGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYG 60
           M  +D+     + DV + +  E+I G+QR    + + +R +  G+ ++  E Y+D  RYG
Sbjct: 473 MRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWYLDLRRYG 532

Query: 61  APPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 94
              H GFG+G ER++    G++NIR    FPR P
Sbjct: 533 TVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYP 566

[Close]

BLAST of Carg02918 vs. TAIR10
Match: AT4G17300.1 (Class II aminoacyl-tRNA and biotin synthetases superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-11
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 21  EIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGL 80
           E+I G+QR    E L  R     ++ ++   Y+D  RYG+ PH GFG+G ER+V    G+
Sbjct: 490 ELIGGSQREERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGI 549

Query: 81  NNIRKTSLFPRDP 94
           +NIR    FPR P
Sbjct: 550 DNIRDVIPFPRTP 562

[Close]

BLAST of Carg02918 vs. Swiss-Prot
Match: sp|Q9M084|SYDC2_ARATH (Aspartate--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=IBI1 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.4e-46
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           M C DNP YSNSFDVFIRGEEIISGAQRVH+PE L +RA  CGIDVKTI TYIDSFRYGA
Sbjct: 461 MTCADNPLYSNSFDVFIRGEEIISGAQRVHIPEVLEQRAGECGIDVKTISTYIDSFRYGA 520

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           P HGGFGVGLERVVMLFC LNNIRKTSLFPRDPQR++P
Sbjct: 521 PLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQRLSP 558

[Close]

BLAST of Carg02918 vs. Swiss-Prot
Match: sp|Q8H104|SYDC1_ARATH (Aspartate--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g26870 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.0e-42
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MP  ++  YSNSFDVFIRGEEI+SGAQR+H PE L +RA+ CGIDVKTI TYID+FRYGA
Sbjct: 435 MPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPELLEKRARECGIDVKTISTYIDAFRYGA 494

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVML C LNNIRKTSLFPRD QR+ P
Sbjct: 495 PPHGGFGVGLERVVMLLCALNNIRKTSLFPRDSQRLTP 532

[Close]

BLAST of Carg02918 vs. Swiss-Prot
Match: sp|P14868|SYDC_HUMAN (Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=DARS PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-34
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MP   NP  SNS+D+F+RGEEI+SGAQR+H P+ L ERA   GID++ I+ YIDSFR+GA
Sbjct: 404 MPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGA 463

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPH G G+GLERV MLF GL+N+R+TS+FPRDP+R+ P
Sbjct: 464 PPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501

[Close]

BLAST of Carg02918 vs. Swiss-Prot
Match: sp|Q922B2|SYDC_MOUSE (Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Dars PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-34
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MP   NP  SNS+D+F+RGEEI+SGAQR+H P+ L ERA   GID++ I+ YIDSFR+GA
Sbjct: 404 MPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGA 463

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPH G G+GLERV MLF GL+N+R+TS+FPRDP+R+ P
Sbjct: 464 PPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501

[Close]

BLAST of Carg02918 vs. Swiss-Prot
Match: sp|Q5R9I5|SYDC_PONAB (Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=DARS PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-34
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MP   NP  SNS+D+F+RGEEI+SGAQR+H P+ L ERA   GID++ I+ YIDSFR+GA
Sbjct: 404 MPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGA 463

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPH G G+GLERV MLF GL+N+R+TS+FPRDP+R+ P
Sbjct: 464 PPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501

[Close]

BLAST of Carg02918 vs. TrEMBL
Match: tr|A0A2I4GP85|A0A2I4GP85_9ROSI (aspartate--tRNA ligase 2, cytoplasmic OS=Juglans regia OX=51240 GN=LOC109009608 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPC DNPTYSNSFDVFIRGEEIISGAQRVHVPEFL ERAQACGIDVKTI TYIDSFRYGA
Sbjct: 461 MPCFDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLVERAQACGIDVKTISTYIDSFRYGA 520

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP RIAP
Sbjct: 521 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 558

[Close]

BLAST of Carg02918 vs. TrEMBL
Match: tr|V4SEI1|V4SEI1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004669mg PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDN  YSNSFDVFIRGEEIISGAQR+H+PEFLAERAQACGIDVKTI TYIDSFRYGA
Sbjct: 456 MPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA 515

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP RIAP
Sbjct: 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553

[Close]

BLAST of Carg02918 vs. TrEMBL
Match: tr|A0A2H5P0A9|A0A2H5P0A9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_090130 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDN  YSNSFDVFIRGEEIISGAQR+H+PEFLAERAQACGIDVKTI TYIDSFRYGA
Sbjct: 456 MPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA 515

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP RIAP
Sbjct: 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553

[Close]

BLAST of Carg02918 vs. TrEMBL
Match: tr|A0A067DVC8|A0A067DVC8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g008808mg PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHDN  YSNSFDVFIRGEEIISGAQR+H+PEFLAERAQACGIDVKTI TYIDSFRYGA
Sbjct: 456 MPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA 515

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP RIAP
Sbjct: 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553

[Close]

BLAST of Carg02918 vs. TrEMBL
Match: tr|A0A1Q3B6J0|A0A1Q3B6J0_CEPFO (tRNA-synt_2 domain-containing protein/tRNA_anti domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07164 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGA 60
           MPCHD+P YSNSFDVFIRGEEIISGAQRVHVP+FLAERAQACGIDV TI TYIDSFRYGA
Sbjct: 438 MPCHDSPLYSNSFDVFIRGEEIISGAQRVHVPDFLAERAQACGIDVNTISTYIDSFRYGA 497

Query: 61  PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 99
           PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP RIAP
Sbjct: 498 PPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 535

The following BLAST results are available for this feature:

BLAST of Carg02918 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976148.1	2.0e-52	100.00	aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita maxima]	[more]
XP_023535979.1	2.0e-52	100.00	aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022138313.1	5.9e-52	98.98	aspartate--tRNA ligase 2, cytoplasmic [Momordica charantia]	[more]
XP_022936995.1	5.9e-52	98.98	aspartate--tRNA ligase 2, cytoplasmic-like [Cucurbita moschata]	[more]
XP_018845710.1	1.6e-49	95.92	PREDICTED: aspartate--tRNA ligase 2, cytoplasmic [Juglans regia]	[more]

BLAST of Carg02918 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31180.1	4.1e-47	85.71	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	[more]
AT4G26870.1	2.8e-43	78.57	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	[more]
AT5G56680.1	2.5e-12	35.11	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	[more]
AT1G70980.1	9.6e-12	34.04	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	[more]
AT4G17300.1	2.1e-11	41.10	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	[more]

BLAST of Carg02918 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M084\|SYDC2_ARATH	7.4e-46	85.71	Aspartate--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=IBI1 PE...	[more]
sp\|Q8H104\|SYDC1_ARATH	5.0e-42	78.57	Aspartate--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g268...	[more]
sp\|P14868\|SYDC_HUMAN	3.8e-34	64.29	Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=DARS PE=1 SV=2	[more]
sp\|Q922B2\|SYDC_MOUSE	3.8e-34	64.29	Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Dars PE=1 SV=2	[more]
sp\|Q5R9I5\|SYDC_PONAB	3.8e-34	64.29	Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=DARS PE=2 SV=1	[more]

BLAST of Carg02918 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4GP85\|A0A2I4GP85_9ROSI	1.1e-49	95.92	aspartate--tRNA ligase 2, cytoplasmic OS=Juglans regia OX=51240 GN=LOC109009608 ...	[more]
tr\|V4SEI1\|V4SEI1_9ROSI	5.3e-49	92.86	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004669mg PE=3 ...	[more]
tr\|A0A2H5P0A9\|A0A2H5P0A9_CITUN	5.3e-49	92.86	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_090130 PE=3 SV=1	[more]
tr\|A0A067DVC8\|A0A067DVC8_CITSI	5.3e-49	92.86	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g008808mg PE=3 SV=1	[more]
tr\|A0A1Q3B6J0\|A0A1Q3B6J0_CEPFO	5.3e-49	93.88	tRNA-synt_2 domain-containing protein/tRNA_anti domain-containing protein OS=Cep...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006422	aspartyl-tRNA aminoacylation
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004815	aspartate-tRNA ligase activity
GO:0005524	ATP binding
GO:0004812	aminoacyl-tRNA ligase activity
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006195	aa-tRNA-synth_II
IPR004523	Asp-tRNA_synthase_2
IPR004364	aa-tRNA-synt_II
IPR002312	Asp/Asn-tRNA-synth_IIb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006422	aspartyl-tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004815	aspartate-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02918-RA	Carg02918-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002312	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	PRINTS	PR01042	TRNASYNTHASP	coord: 53..67 score: 55.15 coord: 13..29 score: 40.11
None	No IPR available	GENE3D	G3DSA:3.30.930.10		coord: 1..98 e-value: 1.0E-34 score: 122.2
None	No IPR available	PANTHER	PTHR43450:SF1	ASPARTATE--TRNA LIGASE, CYTOPLASMIC	coord: 1..98
None	No IPR available	SUPERFAMILY	SSF55681	Class II aaRS and biotin synthetases	coord: 1..93
IPR004364	Aminoacyl-tRNA synthetase, class II (D/K/N)	PFAM	PF00152	tRNA-synt_2	coord: 3..92 e-value: 4.9E-25 score: 88.2
IPR004523	Aspartate-tRNA synthetase, type 2	PANTHER	PTHR43450	FAMILY NOT NAMED	coord: 1..98
IPR006195	Aminoacyl-tRNA synthetase, class II	PROSITE	PS50862	AA_TRNA_LIGASE_II	coord: 1..90 score: 8.733

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02918	Wax gourd	carwgoB0748
Carg02918	Wax gourd	carwgoB0752
Carg02918	Silver-seed gourd	carcarB067
Carg02918	Silver-seed gourd	carcarB511
Carg02918	Silver-seed gourd	carcarB558
Carg02918	Cucumber (Gy14) v2	carcgybB0630
Carg02918	Cucumber (Gy14) v2	carcgybB0632
Carg02918	Cucumber (Gy14) v1	carcgyB0708
Carg02918	Cucumber (Gy14) v1	carcgyB0712
Carg02918	Cucurbita maxima (Rimu)	carcmaB0889
Carg02918	Cucurbita maxima (Rimu)	carcmaB0893
Carg02918	Cucurbita maxima (Rimu)	carcmaB0894
Carg02918	Cucurbita moschata (Rifu)	carcmoB0865
Carg02918	Cucurbita moschata (Rifu)	carcmoB0869
Carg02918	Cucurbita moschata (Rifu)	carcmoB0870
Carg02918	Cucurbita pepo (Zucchini)	carcpeB0896
Carg02918	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02918	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02918	Cucurbita pepo (Zucchini)	carcpeB0908
Carg02918	Wild cucumber (PI 183967)	carcpiB0664
Carg02918	Wild cucumber (PI 183967)	carcpiB0665
Carg02918	Cucumber (Chinese Long) v2	carcuB0653
Carg02918	Cucumber (Chinese Long) v2	carcuB0655
Carg02918	Cucumber (Chinese Long) v3	carcucB0664
Carg02918	Cucumber (Chinese Long) v3	carcucB0666
Carg02918	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02918	Bottle gourd (USVL1VR-Ls)	carlsiB581
Carg02918	Melon (DHL92) v3.5.1	carmeB0628
Carg02918	Melon (DHL92) v3.5.1	carmeB0631
Carg02918	Melon (DHL92) v3.6.1	carmedB0638
Carg02918	Melon (DHL92) v3.6.1	carmedB0640
Carg02918	Watermelon (Charleston Gray)	carwcgB0619
Carg02918	Watermelon (Charleston Gray)	carwcgB0613
Carg02918	Watermelon (97103) v1	carwmB0628
Carg02918	Watermelon (97103) v1	carwmB0630
Carg02918	Watermelon (97103) v2	carwmbB0659
Carg02918	Watermelon (97103) v2	carwmbB0666