Carg02826 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02826
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ER membrane protein complex subunit 4
Location	Cucurbita_argyrosperma_scaffold_008 : 260567 .. 263779 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGGCAAAGGATTGATGGTGGACGGCCGGCGATGGGCCGTTGATTTCTCCGACAATTCTTCGTCGAACTCGACTCGCGACATTGTTGATCCTCCTGGTTTCACTCGTGCTTCTCAAGATCAGGACGATTCGACTCTCAGCCGCCAAAAGAAGGATGCTGAATCCAATTGGAAGGCACAGGTGTTACTCGGAATTCTATTATTTCGGTCGATTAGGGTTTTTTGTTTTTTGAATCTTTTAATTTCCTACTCGGATGTTATTTTGAGACTGTTCGTGCTTAATTTTTCACGTATCTCGCTGGATTGTAGTATTACCGTTTTTTAAGCATTTCCGATCGACTGTTGAATCTGTGAGTAGTTTGAGTTTTGGAGTAAATTTAAGCATGCTCAAATGTTAACGAACTATCACAATGCTTTCTTTCTATGTTTTTTAATAAAATTCTAAGGATGAATCTTTGTTCCACGATGTTTAATTCTACGTCTCTGCGCTCCTGCTGGTCTTTTTTACCGTCAACATGAATTTTATTGTCAAATGTAGTTAATCTAACCGTAGAATATACGAGCAGAAAGCTTGGGAAGTGGCCCAGGCGCCTTTGAAGAATTTGTTCATGATGGGCTTCATGATGTGGATGGCTGGTAGCACTGTTCATTTATTTAGCATTGGTATCACATTTTCAGCTCTTTGGCAACCCATAAGCGCCCTGCAAGGCGTTGGAAAGGGTAGGATTAATATCCATTCTCATTTATTTAGCATTGGGTTTTTTTTTTTCCATTTTCATTGTTGACTACTGTACCTCTCCTTGTCTGATTTTGCATTAAGCTGGCTTGTAATGGCCAATCTGAATGACTCAGCTTCCTCTTCCCCACTTGGTATCGTTTTTTCTTTTGCTAAATTGAGCATGGTTAGAAGAATCTTCTGATATGAACTCAGACACCAATCATGCAATATGAACTTCAAGGAAGATGTGAAGAAAACGTTGTTAAAATTATCAACATTTGTTTTAATTCATGCCATATTGAAGAAGAATCAAGCTTCATTGTTATAAGTTTTGGGTGGATCATAATTTAGAGATATGAAGTTTAGTCAATGCATTTAAGACTTTTTATTTACTTTAGGTTACATTTACATAGTGGTTAATTATGGTTATAAAGTATGAATATTACCATTCTTGAAATGCCTAATGGAATGTCAAAAGTTTCTTTTTGAGGCTATATAAAACCATATATGTTGTATATGTGAAAGGAGACTAGGAAAATGTAGTAAAAAGACATTTTTACTTTCGTTTAGCCAAGAGCTAAGTTTCTTTGCAATTCTATGTAGGTTAGATTGCATGTTTAAAATAATTCAAGCTTGACATGATCGATCTTGCTCGTGGAGTGATTCGAATCTCAAACGAGTATTCTCGCCTTGAGATATTTGATCAACTAGATAATCCTAATCTTACTTCCCTTGTAGTGATTCCATACCATTTAGTATTAGAACTTTCCCGTGGGTTGATTCCTTATTATCTTCCAATGGATCTATGTTCCTCATTGAGGCTCTGCAAAGAGGCACGTTAGGAGCGTAATGATATTATATAAGCTATACATTTTTGAAGTATGTTAGGAAAAATTATATAACTTGTGGGATGTTAGTGAATTTATTTAAGTTGGTTGATCATATTGTTGCTTGTTTGTATTGATATTCCTTTTCCCCGCAGTCTTTGAGCCTTACAAGGACAGTAAAGTTGATCTTCTTGGACCTAAGTTGCTGTTTATTGCCCTTAACCTCGGAGGCTTAGCATTAGGTGTTTGGAAGGTGAGTTTTCTAACTATTGTTCTCAGCATCTCTTTAGTATTTATCGATTGCTGCTTAATTTTCCGACGTCTCAAATGTGGCTCTTGCAGCTTAACACTTTGGGGCTTCTGCCAACTCATGTATCCGACTGGGTTTCGTCTCTACCGCCTGCTCAGGTTAGAATCTTACTCTTATGCTAATATGATTACCCCTTTGCCCAGGCTTGAGCATGTCGCCTAAACTATTCGCAGATTTCTGAAATGATATATGGAATTTGTTCAATGGTTGGAATAGCTTCATACCCTGGCAGCTCATAGGCTTCATGTTTCAATAACATGTCGTGGTAGTCAGATACAGTGTTAGGATGCAAGTTCCCCATGCTTTAATTTTTGTTAGAATGCAATTTCTATGGTTAATAATCAAGAAGAAATATTTTGACAATTGGTTCAGTGTCAATAGAATTTCTAGGTCATCTATTTGACATGTGAGATCCCACGTCGATTGGAGATGGGAATGGAACATTCTTTATAAGAGTGTGAAAACCTCTCCCTATCAGACGCGTTTTAAAATCGTGAGGCTGACAGTGATACGTAACGGGACAAAGTGGACAAGCGGTGGGCTTAGGCTGTTACACCTCCTTAGGCATTTCTAATGTGGATTGAGTTGTGATTATTAATGATCGGCAGCGGAAAGGTCGGTTGTAGTTAGCTTTACTTCAGACTCAATTTAGTTAGGTTGGTGGGATGGGAGAAAATAGGAGGGATGAATAAGGTAGGAGAGAAATGAAGCTCAAGTGGTCAAGGCATTATCACTTCGACCGAAAAGTCAGAGATTCGAATCCTATTTGTGGGTGAAGACTCCACTGAGTCAATCTTGGCACTGAAACTCATAAGCTGATGAAACATGGACATAGTTGGGATGTGTGCTTAACAAAACAATAGTAATTTGTCACGTCTTTTCATTCAACGAACGTTTAGAGTACGAAAATAACACTAGTTTTGATCAGTGCCATCACCTTGAAACTTTGATGTTAATCCTTCAATCCTCGGTACCATTGCTAAAGATTCATCATCTTCTTTCTCAGGAGGTCGAATTTTCTGGTGGTGGCATTTCTCTTCGTTAAGATACACACCGCTTCGAAACCGACCGAGGAAATATTGTAGCTGCTTGTTGAAGATTGAATATCATCGGCGGATTGCTTGTGTTGAGCAAGAACATGATGGTATCTCTTTATATTACTCCTGGATGGATTGTGCTTGATCAAGAACAATGCTATACAGATGTGCTGATGGCACAGCTATTACTTTACTTAGGATGTTACTGACTGGTAAAACCATCTCACACGGTATGCTAATATGCCTTGGTCTCTGTAGGCCCGGGAACAAAATGCTTTACTTGGAATACGATTAACATATTTTGATTTTTTTTTTT

mRNA sequence

ATGGAGAAGGGCAAAGGATTGATGGTGGACGGCCGGCGATGGGCCGTTGATTTCTCCGACAATTCTTCGTCGAACTCGACTCGCGACATTGTTGATCCTCCTGGTTTCACTCGTGCTTCTCAAGATCAGGACGATTCGACTCTCAGCCGCCAAAAGAAGGATGCTGAATCCAATTGGAAGGCACAGAAAGCTTGGGAAGTGGCCCAGGCGCCTTTGAAGAATTTGTTCATGATGGGCTTCATGATGTGGATGGCTGGTAGCACTGTTCATTTATTTAGCATTGGTATCACATTTTCAGCTCTTTGGCAACCCATAAGCGCCCTGCAAGGCGTTGGAAAGGTCTTTGAGCCTTACAAGGACAGTAAAGTTGATCTTCTTGGACCTAAGTTGCTGTTTATTGCCCTTAACCTCGGAGGCTTAGCATTAGGTGTTTGGAAGCTTAACACTTTGGGGCTTCTGCCAACTCATGTATCCGACTGGGTTTCGTCTCTACCGCCTGCTCAGGAGGTCGAATTTTCTGGTGGTGGCATTTCTCTTCGTTAAGATACACACCGCTTCGAAACCGACCGAGGAAATATTGTAGCTGCTTGTTGAAGATTGAATATCATCGGCGGATTGCTTGTGTTGAGCAAGAACATGATGGTATCTCTTTATATTACTCCTGGATGGATTGTGCTTGATCAAGAACAATGCTATACAGATGTGCTGATGGCACAGCTATTACTTTACTTAGGATGTTACTGACTGGTAAAACCATCTCACACGGTATGCTAATATGCCTTGGTCTCTGTAGGCCCGGGAACAAAATGCTTTACTTGGAATACGATTAACATATTTTGATTTTTTTTTTT

Coding sequence (CDS)

ATGGAGAAGGGCAAAGGATTGATGGTGGACGGCCGGCGATGGGCCGTTGATTTCTCCGACAATTCTTCGTCGAACTCGACTCGCGACATTGTTGATCCTCCTGGTTTCACTCGTGCTTCTCAAGATCAGGACGATTCGACTCTCAGCCGCCAAAAGAAGGATGCTGAATCCAATTGGAAGGCACAGAAAGCTTGGGAAGTGGCCCAGGCGCCTTTGAAGAATTTGTTCATGATGGGCTTCATGATGTGGATGGCTGGTAGCACTGTTCATTTATTTAGCATTGGTATCACATTTTCAGCTCTTTGGCAACCCATAAGCGCCCTGCAAGGCGTTGGAAAGGTCTTTGAGCCTTACAAGGACAGTAAAGTTGATCTTCTTGGACCTAAGTTGCTGTTTATTGCCCTTAACCTCGGAGGCTTAGCATTAGGTGTTTGGAAGCTTAACACTTTGGGGCTTCTGCCAACTCATGTATCCGACTGGGTTTCGTCTCTACCGCCTGCTCAGGAGGTCGAATTTTCTGGTGGTGGCATTTCTCTTCGTTAA

Protein sequence

MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWKAQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR

Homology

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BLAST of Carg02826 vs. NCBI nr
Match: XP_022935895.1 (ER membrane protein complex subunit 4-like [Cucurbita moschata] >XP_023535009.1 ER membrane protein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.8 bits (930), Expect = 6.5e-97
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180

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BLAST of Carg02826 vs. NCBI nr
Match: XP_008452824.1 (PREDICTED: ER membrane protein complex subunit 4 [Cucumis melo])

HSP 1 Score: 360.5 bits (924), Expect = 3.2e-96
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVDGRRWAVDFSDNSSSNSTRDI DPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIPDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180

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BLAST of Carg02826 vs. NCBI nr
Match: XP_022977118.1 (ER membrane protein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 359.4 bits (921), Expect = 7.2e-96
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAG TVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGRTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQ+VEFSGGG+SLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQDVEFSGGGVSLR 180

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BLAST of Carg02826 vs. NCBI nr
Match: XP_004145491.1 (PREDICTED: ER membrane protein complex subunit 4 [Cucumis sativus] >KGN55415.1 hypothetical protein Csa_4G651820 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 2.1e-95
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVD RRWAVDFSDNSSSNSTRDI DPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDSRRWAVDFSDNSSSNSTRDIPDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTH+SDWVSSLPPAQEVEFSGGGISLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHISDWVSSLPPAQEVEFSGGGISLR 180

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BLAST of Carg02826 vs. NCBI nr
Match: XP_022941437.1 (ER membrane protein complex subunit 4-like [Cucurbita moschata] >XP_022982038.1 ER membrane protein complex subunit 4-like [Cucurbita maxima] >XP_023524401.1 ER membrane protein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 4.0e-94
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVDGRRWAVDF+DNSSSNSTRDI DPPGF RASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDGRRWAVDFTDNSSSNSTRDIPDPPGFNRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTH+SDWVSSLPPAQEVEFSGGG  LR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHISDWVSSLPPAQEVEFSGGGFPLR 180

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BLAST of Carg02826 vs. TAIR10
Match: AT5G10780.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 281.2 bits (718), Expect = 4.5e-76
Identity = 135/168 (80.36%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           M+KGK +M  GRRWAV+FSD S+  S+RDI+DPPGF+RASQ+QDDS  SRQKKDAE+ WK
Sbjct: 1   MDKGKAVMGTGRRWAVEFSDQSTVPSSRDILDPPGFSRASQEQDDSANSRQKKDAEATWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
            QKAWEVAQ+P KNL MMGFMMWMAG+TVHLFSIGITFSALWQPISALQ VGK+FEP+KD
Sbjct: 61  LQKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALWQPISALQSVGKIFEPFKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQ 169
           +KV+LL PKL+F+ALNLGGLALGVWKLNTLGLLPTH SDWVSSLPP Q
Sbjct: 121 NKVELLMPKLVFLALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPPQ 168

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BLAST of Carg02826 vs. Swiss-Prot
Match: sp|Q6P011|EMC4_DANRE (ER membrane protein complex subunit 4 OS=Danio rerio OX=7955 GN=emc4 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.8e-20
Identity = 59/171 (34.50%), Postives = 95/171 (55.56%), Query Frame = 0


Query: 13  RWAVDFS-DNSSSNSTR-----DIVDPPGFTRASQDQDDSTLSRQKKDAESNWKAQKAWE 72
           +WAV+ S  NS S S R     D++ P G++      D        ++A+ N   ++ W+
Sbjct: 24  KWAVELSLGNSRSRSDRQGKDGDVMYPVGYS------DKPVPDTSVQEADRNLVEKRCWD 83

Query: 73  VAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLL 132
           VA  PLK + M  F+M+M+G+T+ +F I +     W+PI AL  +   F+  + S    L
Sbjct: 84  VALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWL 143

Query: 133 GPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGI 178
              L+++  NL G AL ++K  ++GLLPTH SDW++ + P Q +E  GGG+
Sbjct: 144 -QGLVYLIGNLLGSALAIYKCQSMGLLPTHSSDWLAFIEPPQRLEIMGGGM 187

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BLAST of Carg02826 vs. Swiss-Prot
Match: sp|Q6GR43|EMC4_XENLA (ER membrane protein complex subunit 4 OS=Xenopus laevis OX=8355 GN=emc4 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.9e-19
Identity = 58/176 (32.95%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 11  GRR--WAVDFSDNSS-----SNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWKAQK 70
           GRR  WA++F    S         +D + P G++      D        ++++     ++
Sbjct: 12  GRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS------DKQVPDTSVQESDHILVEKR 71

Query: 71  AWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKV 130
            W++A  PLK + M  F+M+MAG+T+ +F I +     W+PI AL      F+  + S  
Sbjct: 72  CWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLESSGQ 131

Query: 131 DLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISL 180
             L   L+++  NL GLALGV+K  ++GLLPTH SDW++ + P + +E++GGG  L
Sbjct: 132 RFL-QGLVYLIGNLLGLALGVYKCQSMGLLPTHASDWLAFIEPPERMEYTGGGFLL 180

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BLAST of Carg02826 vs. Swiss-Prot
Match: sp|Q3T0K8|EMC4_BOVIN (ER membrane protein complex subunit 4 OS=Bos taurus OX=9913 GN=EMC4 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.3e-19
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 0


Query: 11  GRR--WAVDFSDNSSSNSTR--------DIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 70
           GRR  WA++ S     +  R        D + P G+       D        ++ +    
Sbjct: 12  GRRFKWAIELSGPGGGSRGRSDRGGGQGDSLYPVGYL------DKQVPDTSVQETDRILV 71

Query: 71  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 130
            ++ W++A  PLK + M  F+M+MAG+T+ +F   +     W+PI AL  +   F+  + 
Sbjct: 72  EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 131

Query: 131 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISL 180
           S    L   L+++  NL GLAL V+K  ++GLLPTH SDW++ + P + +EFSGGG+ L
Sbjct: 132 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183

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BLAST of Carg02826 vs. Swiss-Prot
Match: sp|Q5J8M3|EMC4_HUMAN (ER membrane protein complex subunit 4 OS=Homo sapiens OX=9606 GN=EMC4 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 8.3e-19
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 0


Query: 11  GRR--WAVDFSDNSSSNSTR--------DIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 70
           GRR  WA++ S     +  R        D + P G+       D        ++ +    
Sbjct: 12  GRRFKWAIELSGPGGGSRGRSDRGSGQGDSLYPVGYL------DKQVPDTSVQETDRILV 71

Query: 71  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 130
            ++ W++A  PLK + M  F+M+MAG+T+ +F   +     W+PI AL  +   F+  + 
Sbjct: 72  EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 131

Query: 131 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISL 180
           S    L   L+++  NL GLAL V+K  ++GLLPTH SDW++ + P + +EFSGGG+ L
Sbjct: 132 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183

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BLAST of Carg02826 vs. Swiss-Prot
Match: sp|Q9CZX9|EMC4_MOUSE (ER membrane protein complex subunit 4 OS=Mus musculus OX=10090 GN=Emc4 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.3e-19
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 0


Query: 11  GRR--WAVDFSDNSSSNSTR--------DIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 70
           GRR  WA++ S     +  R        D + P G+       D        ++ +    
Sbjct: 12  GRRFKWAIELSGPGGGSRGRSDRGSGQGDSLYPVGYL------DKQVPDTSVQETDRILV 71

Query: 71  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 130
            ++ W++A  PLK + M  F+M+MAG+T+ +F   +     W+PI AL  +   F+  + 
Sbjct: 72  EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 131

Query: 131 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISL 180
           S    L   L+++  NL GLAL V+K  ++GLLPTH SDW++ + P + +EFSGGG+ L
Sbjct: 132 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183

[Close]

BLAST of Carg02826 vs. TrEMBL
Match: tr|A0A1S3BUR2|A0A1S3BUR2_CUCME (ER membrane protein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103493734 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 2.1e-96
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVDGRRWAVDFSDNSSSNSTRDI DPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIPDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180

[Close]

BLAST of Carg02826 vs. TrEMBL
Match: tr|A0A0A0L0B6|A0A0A0L0B6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651820 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.4e-95
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKGLMVD RRWAVDFSDNSSSNSTRDI DPPGFTRASQDQDDSTLSRQKKDAESNWK
Sbjct: 1   MEKGKGLMVDSRRWAVDFSDNSSSNSTRDIPDPPGFTRASQDQDDSTLSRQKKDAESNWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTH+SDWVSSLPPAQEVEFSGGGISLR
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHISDWVSSLPPAQEVEFSGGGISLR 180

[Close]

BLAST of Carg02826 vs. TrEMBL
Match: tr|A0A2P4IIQ1|A0A2P4IIQ1_QUESU (Er membrane protein complex subunit 4 OS=Quercus suber OX=58331 GN=CFP56_20714 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.6e-88
Identity = 163/180 (90.56%), Postives = 172/180 (95.56%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKG+MV GRRW VDF+DNS+S S+RDI DPPGF+RASQDQDDSTLSRQKKDAE+NWK
Sbjct: 1   MEKGKGVMVGGRRWGVDFTDNSASPSSRDIPDPPGFSRASQDQDDSTLSRQKKDAEANWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           +QKAWEVAQAP KNL MMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  SQKAWEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKV+LLGPKLLFIALNLGGLALGVWKLNTLGLLPTH SDWVSSLPPAQEVE+SGGGI LR
Sbjct: 121 SKVELLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPAQEVEYSGGGIPLR 180

[Close]

BLAST of Carg02826 vs. TrEMBL
Match: tr|V4UH15|V4UH15_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009603mg PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 8.2e-88
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKG+M  GRRWAVDF+DNS++ STRDI DPPGF+RASQDQDDSTLSRQKKDAE+NWK
Sbjct: 1   MEKGKGVMGSGRRWAVDFTDNSTTPSTRDIADPPGFSRASQDQDDSTLSRQKKDAEANWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           +QKAWEVAQAP KNL MMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD
Sbjct: 61  SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
           SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTH SDWVSSLPPA EVE+SGGGI L+
Sbjct: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPLQ 180

[Close]

BLAST of Carg02826 vs. TrEMBL
Match: tr|A0A2N9F2U0|A0A2N9F2U0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9287 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 8.2e-88
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWK 60
           MEKGKG+MV GRRWAVDFSDNS+S S+RDI DPPGF+RASQDQDDS+LSRQKKDAE+NWK
Sbjct: 1   MEKGKGVMVGGRRWAVDFSDNSTSPSSRDIPDPPGFSRASQDQDDSSLSRQKKDAEANWK 60

Query: 61  AQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
           +QKAWEVAQAP KNL MMGFMMWMAGSTVHLFSIGITFSALWQPISALQG+GKVFEPYKD
Sbjct: 61  SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGLGKVFEPYKD 120

Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
            KVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTH SDWV SLPPAQEVE+SGGGI LR
Sbjct: 121 GKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVFSLPPAQEVEYSGGGIPLR 180

The following BLAST results are available for this feature:

BLAST of Carg02826 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935895.1	6.5e-97	100.00	ER membrane protein complex subunit 4-like [Cucurbita moschata] >XP_023535009.1 ...	[more]
XP_008452824.1	3.2e-96	99.44	PREDICTED: ER membrane protein complex subunit 4 [Cucumis melo]	[more]
XP_022977118.1	7.2e-96	98.33	ER membrane protein complex subunit 4-like [Cucurbita maxima]	[more]
XP_004145491.1	2.1e-95	98.33	PREDICTED: ER membrane protein complex subunit 4 [Cucumis sativus] >KGN55415.1 h...	[more]
XP_022941437.1	4.0e-94	96.67	ER membrane protein complex subunit 4-like [Cucurbita moschata] >XP_022982038.1 ...	[more]

BLAST of Carg02826 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10780.2	4.5e-76	80.36	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg02826 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6P011\|EMC4_DANRE	9.8e-20	34.50	ER membrane protein complex subunit 4 OS=Danio rerio OX=7955 GN=emc4 PE=2 SV=1	[more]
sp\|Q6GR43\|EMC4_XENLA	4.9e-19	32.95	ER membrane protein complex subunit 4 OS=Xenopus laevis OX=8355 GN=emc4 PE=2 SV=...	[more]
sp\|Q3T0K8\|EMC4_BOVIN	8.3e-19	32.40	ER membrane protein complex subunit 4 OS=Bos taurus OX=9913 GN=EMC4 PE=2 SV=1	[more]
sp\|Q5J8M3\|EMC4_HUMAN	8.3e-19	32.40	ER membrane protein complex subunit 4 OS=Homo sapiens OX=9606 GN=EMC4 PE=1 SV=2	[more]
sp\|Q9CZX9\|EMC4_MOUSE	8.3e-19	32.40	ER membrane protein complex subunit 4 OS=Mus musculus OX=10090 GN=Emc4 PE=1 SV=1	[more]

BLAST of Carg02826 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUR2\|A0A1S3BUR2_CUCME	2.1e-96	99.44	ER membrane protein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103493734 PE...	[more]
tr\|A0A0A0L0B6\|A0A0A0L0B6_CUCSA	1.4e-95	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651820 PE=4 SV=1	[more]
tr\|A0A2P4IIQ1\|A0A2P4IIQ1_QUESU	1.6e-88	90.56	Er membrane protein complex subunit 4 OS=Quercus suber OX=58331 GN=CFP56_20714 P...	[more]
tr\|V4UH15\|V4UH15_9ROSI	8.2e-88	90.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009603mg PE=4 ...	[more]
tr\|A0A2N9F2U0\|A0A2N9F2U0_FAGSY	8.2e-88	90.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9287 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009445	TMEM85/Emc4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02826-RA	Carg02826-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009445	TMEM85/ER membrane protein complex subunit 4	PIRSF	PIRSF017207	UCP017207_Tmem85	coord: 1..178 e-value: 7.2E-53 score: 176.6
IPR009445	TMEM85/ER membrane protein complex subunit 4	PFAM	PF06417	DUF1077	coord: 52..164 e-value: 4.2E-38 score: 129.9
IPR009445	TMEM85/ER membrane protein complex subunit 4	PANTHER	PTHR19315	FAMILY NOT NAMED	coord: 11..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02826	Cla021042	Watermelon (97103) v1	carwmB0630
Carg02826	Csa4G651820	Cucumber (Chinese Long) v2	carcuB0656
Carg02826	MELO3C016948	Melon (DHL92) v3.5.1	carmeB0633
Carg02826	ClCG05G016150	Watermelon (Charleston Gray)	carwcgB0613
Carg02826	CSPI04G26100	Wild cucumber (PI 183967)	carcpiB0666
Carg02826	Cucsa.271390	Cucumber (Gy14) v1	carcgyB0710
Carg02826	CmaCh01G016770	Cucurbita maxima (Rimu)	carcmaB0896
Carg02826	CmaCh09G003980	Cucurbita maxima (Rimu)	carcmaB0889
Carg02826	CmoCh01G017270	Cucurbita moschata (Rifu)	carcmoB0874
Carg02826	CmoCh09G003990	Cucurbita moschata (Rifu)	carcmoB0865
Carg02826	Lsi04G013500	Bottle gourd (USVL1VR-Ls)	carlsiB576
Carg02826	Cp4.1LG02g05620	Cucurbita pepo (Zucchini)	carcpeB0898
Carg02826	Cp4.1LG06g02770	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02826	CsGy4G024410	Cucumber (Gy14) v2	carcgybB0633
Carg02826	MELO3C016948.2	Melon (DHL92) v3.6.1	carmedB0642
Carg02826	CsaV3_4G036420	Cucumber (Chinese Long) v3	carcucB0667
Carg02826	Cla97C05G097110	Watermelon (97103) v2	carwmbB0659
Carg02826	Bhi09G002494	Wax gourd	carwgoB0754

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02826	Carg10745	Silver-seed gourd	carcarB556

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02826	Silver-seed gourd	carcarB163
Carg02826	Silver-seed gourd	carcarB558
Carg02826	Cucumber (Gy14) v2	carcgybB0631
Carg02826	Cucumber (Gy14) v1	carcgyB0709
Carg02826	Cucurbita maxima (Rimu)	carcmaB0901
Carg02826	Cucurbita moschata (Rifu)	carcmoB0878
Carg02826	Cucurbita pepo (Zucchini)	carcpeB0895
Carg02826	Wild cucumber (PI 183967)	carcpiB0663
Carg02826	Cucumber (Chinese Long) v2	carcuB0654
Carg02826	Cucumber (Chinese Long) v3	carcucB0665
Carg02826	Bottle gourd (USVL1VR-Ls)	carlsiB580
Carg02826	Melon (DHL92) v3.5.1	carmeB0629
Carg02826	Melon (DHL92) v3.6.1	carmedB0637
Carg02826	Watermelon (Charleston Gray)	carwcgB0618
Carg02826	Watermelon (97103) v1	carwmB0629
Carg02826	Watermelon (97103) v2	carwmbB0665
Carg02826	Wax gourd	carwgoB0750