Carg02560 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02560
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein, LEA-14
Location	Cucurbita_argyrosperma_scaffold_009 : 612638 .. 612913 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

mRNA sequence

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

Coding sequence (CDS)

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

Protein sequence

MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI

Homology

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_022958536.1 (uncharacterized protein LOC111459739 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
           MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 214 MAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 273

Query: 61  FTVLHIKTPDLKIDKLSFSNATSS 85
           FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 274 FTVLHIKTPDLKIDKLSFSNATSN 297

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_023532981.1 (uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
           MA+KDQVKPLASPATHLRSDDD FLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 201 MAEKDQVKPLASPATHLRSDDDHFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 260

Query: 61  FTVLHIKTPDLKIDKLSFSNATSS 85
           FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 261 FTVLHIKTPDLKIDKLSFSNATSN 284

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_022995815.1 (uncharacterized protein LOC111491239 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          M +KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 1  MPEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTVLHIKTPDLKIDKLSFSN TS+
Sbjct: 61 FTVLHIKTPDLKIDKLSFSNTTSN 84

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: KGN50049.1 (hypothetical protein Csa_5G152140 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-26
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
          MA K+QVKPLAS +  LRSDD  FLPPP  KL LHRNKYIMC GCFAALLLILAVIGIVL
Sbjct: 1  MADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCGCFAALLLILAVIGIVL 60

Query: 61 GFTVLHIKTPDLKIDKLSFSNATSS 85
          GFTV HIKTPD+KID LSF N T S
Sbjct: 61 GFTVFHIKTPDIKIDSLSFPNDTLS 85

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_004143964.2 (PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-26
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
           MA K+QVKPLAS +  LRSDD  FLPPP  KL LHRNKYIMC GCFAALLLILAVIGIVL
Sbjct: 233 MADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCGCFAALLLILAVIGIVL 292

Query: 61  GFTVLHIKTPDLKIDKLSFSNATSS 85
           GFTV HIKTPD+KID LSF N T S
Sbjct: 293 GFTVFHIKTPDIKIDSLSFPNDTLS 317

[Close]

BLAST of Carg02560 vs. TAIR10
Match: AT4G23610.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 4  KDQVKPLASPATHLRSD----DDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVL 63
          +DQ KPLA      RSD    +DQ+     K    + K I+C G  A+L +++AV  IVL
Sbjct: 10 EDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTMLIAVTFIVL 69

Query: 64 GFTVLHIKTPDLKIDKLSFS 80
            TV H+ +P+L +D +SF+
Sbjct: 70 SLTVFHLHSPNLTVDSISFN 89

[Close]

BLAST of Carg02560 vs. TrEMBL
Match: tr|A0A0A0KMH1|A0A0A0KMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-26
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
          MA K+QVKPLAS +  LRSDD  FLPPP  KL LHRNKYIMC GCFAALLLILAVIGIVL
Sbjct: 1  MADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCGCFAALLLILAVIGIVL 60

Query: 61 GFTVLHIKTPDLKIDKLSFSNATSS 85
          GFTV HIKTPD+KID LSF N T S
Sbjct: 61 GFTVFHIKTPDIKIDSLSFPNDTLS 85

[Close]

BLAST of Carg02560 vs. TrEMBL
Match: tr|A0A1S3ATT7|A0A1S3ATT7_CUCME (uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-25
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          MA K+QVKPLAS    LRSDD  FLPPP KL L+RNKYI C GCF+ALLLILAVIGIVLG
Sbjct: 1  MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTV HIKTPD+KID LSF N T S
Sbjct: 61 FTVFHIKTPDIKIDSLSFPNDTLS 84

[Close]

BLAST of Carg02560 vs. TrEMBL
Match: tr|A0A2N9GUH8|A0A2N9GUH8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31020 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-11
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHL-RSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
          MA+++QVKPLA    H  RSD+D+ L    +L+L + KY+ C GCF ALLLILAV+ IVL
Sbjct: 3  MAEREQVKPLAPAGYHTSRSDEDEIL--SNQLKLKQRKYLKCCGCFTALLLILAVLIIVL 62

Query: 61 GFTVLHIKTPDLKIDKLSFSN 81
           FTV HI+ P ++I+ L+  N
Sbjct: 63 TFTVFHIRDPMVRINSLTLQN 81

[Close]

BLAST of Carg02560 vs. TrEMBL
Match: tr|M5WS18|M5WS18_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G109900 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1  MAQKDQVKPLA-SPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
          MA K+Q KPLA + + HLRSD+++     + ++L + KY+MC GC +AL LI+AV  IVL
Sbjct: 1  MAAKEQGKPLAPANSYHLRSDEEEVF-VSSHIKLCQRKYVMCCGCVSALFLIIAVTAIVL 60

Query: 61 GFTVLHIKTPDLKIDKLS 78
          GFTV H+K P +K++ ++
Sbjct: 61 GFTVFHVKGPRIKMNDVT 77

[Close]

BLAST of Carg02560 vs. TrEMBL
Match: tr|A0A2I4E073|A0A2I4E073_9ROSI (uncharacterized protein LOC108985087 OS=Juglans regia OX=51240 GN=LOC108985087 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 6  QVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLH 65
          QVKPLA  A   RSD+D+ L    + RLHR + I C GCF AL LILAV+ +VL FTV H
Sbjct: 8  QVKPLAPKAYRFRSDEDEAL--YMQQRLHRRRCIKCCGCFTALFLILAVVMLVLAFTVFH 67

Query: 66 IKTPDLKIDKLS 78
          IK P ++++ ++
Sbjct: 68 IKDPVIRMNSVT 77

The following BLAST results are available for this feature:

BLAST of Carg02560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958536.1	2.9e-37	97.62	uncharacterized protein LOC111459739 [Cucurbita moschata]	[more]
XP_023532981.1	1.1e-36	96.43	uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo]	[more]
XP_022995815.1	3.3e-36	95.24	uncharacterized protein LOC111491239 [Cucurbita maxima]	[more]
KGN50049.1	5.2e-26	78.82	hypothetical protein Csa_5G152140 [Cucumis sativus]	[more]
XP_004143964.2	5.2e-26	78.82	PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus]	[more]

BLAST of Carg02560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23610.1	2.3e-07	38.75	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg02560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMH1\|A0A0A0KMH1_CUCSA	3.4e-26	78.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1	[more]
tr\|A0A1S3ATT7\|A0A1S3ATT7_CUCME	1.0e-25	76.19	uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=...	[more]
tr\|A0A2N9GUH8\|A0A2N9GUH8_FAGSY	9.1e-11	51.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31020 PE=4 SV=1	[more]
tr\|M5WS18\|M5WS18_PRUPE	6.5e-09	47.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G109900 PE=4 SV=1	[more]
tr\|A0A2I4E073\|A0A2I4E073_9ROSI	1.1e-08	51.39	uncharacterized protein LOC108985087 OS=Juglans regia OX=51240 GN=LOC108985087 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02560-RA	Carg02560-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR31852:SF23	SUBFAMILY NOT NAMED	coord: 1..82
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 1..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02560	Cla011406	Watermelon (97103) v1	carwmB0925
Carg02560	Csa5G152140	Cucumber (Chinese Long) v2	carcuB0939
Carg02560	MELO3C005722	Melon (DHL92) v3.5.1	carmeB0903
Carg02560	ClCG01G002260	Watermelon (Charleston Gray)	carwcgB0898
Carg02560	CSPI05G04930	Wild cucumber (PI 183967)	carcpiB0961
Carg02560	Cucsa.303600	Cucumber (Gy14) v1	carcgyB1043
Carg02560	CmaCh02G014190	Cucurbita maxima (Rimu)	carcmaB1268
Carg02560	CmoCh02G014510	Cucurbita moschata (Rifu)	carcmoB1237
Carg02560	Lsi09G002080	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02560	CsGy5G002240	Cucumber (Gy14) v2	carcgybB0912
Carg02560	MELO3C005722.2	Melon (DHL92) v3.6.1	carmedB0910
Carg02560	CsaV3_5G002330	Cucumber (Chinese Long) v3	carcucB0963
Carg02560	Cla97C01G002300	Watermelon (97103) v2	carwmbB0963
Carg02560	Bhi12G000163	Wax gourd	carwgoB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02560	Wax gourd	carwgoB1068
Carg02560	Silver-seed gourd	carcarB448
Carg02560	Cucumber (Gy14) v2	carcgybB0917
Carg02560	Cucumber (Gy14) v1	carcgyB1038
Carg02560	Cucurbita maxima (Rimu)	carcmaB1261
Carg02560	Cucurbita moschata (Rifu)	carcmoB1230
Carg02560	Cucurbita pepo (Zucchini)	carcpeB1271
Carg02560	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02560	Wild cucumber (PI 183967)	carcpiB0966
Carg02560	Bottle gourd (USVL1VR-Ls)	carlsiB835
Carg02560	Melon (DHL92) v3.5.1	carmeB0907
Carg02560	Melon (DHL92) v3.6.1	carmedB0914
Carg02560	Watermelon (Charleston Gray)	carwcgB0904
Carg02560	Watermelon (97103) v1	carwmB0922
Carg02560	Watermelon (97103) v2	carwmbB0970