Carg01710 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01710
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S9, putative
Location	Cucurbita_argyrosperma_scaffold_003 : 48413 .. 50246 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTTTACATAATGTCTGTTTCTTGGTTCTGTTGCTGAGAACCATGATTACTGAATAGTGCCCTCTTTCATTATATAGATGGGAAGACTTTTAAGAAACCTCGACGCCCTTATGAGAAGGAGCGTTTGGATGCAGAACTTAAACTTGTAGGTGAATATGGGCTTCGATGTAAAAGGGAGCTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGTAATAATGCCAGGATGCTTTTAACTCTTGACGAAAAGAATCCCCGTAGGATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATACGGTCTTTTGGATGAGAGTCAAAACAAGCTCGATTATGTCTTGGCTCTTACTGTCGAGAATTTCCTAGAGCGTCGTCTTCAAACTCTCGTGTTCAAGTCTGGAATGGCCAAGTCTATCCACCATGCCAGAGTGCTCATCAGACAGAAGCATATAAGGTAGAGTGTCTTCTTTCTGCATTGTTGCACTTGTACTTCTTACTCATCAATGTATATCAACAACATCTGTTTGTAGTTATTTTATATAAAATACGCTTAAATTACATAGTTGGTTTCGAATATGCTCCTCTGGCTTCAAAAGCTTACTTTATTACCAATTATAGTTGGTTTCAATGAAATTCTGATTTGCCAATTGAGCTTCAGCTATAGACGTTTAGGGTTTCAGAGGAAAAATGCAACTGATTTTTCTTGTCTTCGCCCTTTCTTACTATTATTAACCAGCGGAATATGTGATCTTCCAAAATCAGTGGTCAAAAGGTAAGGTGGGTCTTGGAAAATGATCAGATAGCACGAATTAGCTACTCATGTTAAGTATCACCAGGAGGGCTACTGTTAACTAATTCTTGTATTTGTTTATTTCACGGATGAATTAAGTTTTTTCCCCCTAGACAATTGAGAAGTTCGATTGTTAATTGAATCATTTATTACAGGGCATAACTGAAACCAACCCTAATATTTATGGGGTATTTTAGGCACTTCAGCATTCTTTTTTTCTTTAGCTGTCTTTAATAGTTTTTGAACCATCTATGAGATTCTTTATGCTGGATAGACAATTGTTGTGCGATGAATATAGACTCTGAAACATTGATTGCCCATGTTTTCAATCTATTACATTTTGGTTCATGTGCATTTTTAGGGTTGGGAGGCAGGTAGTTAACATCCCTTCTTTCATGGTAAGAGTCGATTCCCAGAAGCACATAGACTTCTCTCTCACTAGTCCGTTTGGAGGTGGACGCCCCGGAAGGGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCAGGTGGTGATGGAGATGAAGAAGATGAAGATTGAGTTTCTGACTTAAAACTCATCATCTGAGACAGTAAAGATTAGCCAATGGTCTAAGGTATCTGAGATTAACCTTTATGTCCTATTTCCTCCTCCAGCTAAACCTATCTTAATATTTTTCACTTAGAAATCTTGTTTGTATTTTGGTGGTGGGACTAGTTTTCAATTTTGGACAAGCTTCTCTTCGGACTTAGTTGACATAGTTTTCTTGCCATGATTGGACTTTTTTACTCAAAATTCCTCCGCATCTTGAATGTATTGAGTTGATTTGGTCTAATCTAGCAGCTCAGCTTGTTGTATCTGGAAATGTGATCCGTTTCAAGATTTCAATGAATTTTAATTCCTAGGCTCGCGAGCTCTTGAAATTCAAATCTACATCCAACAGATGAAGGTAGCTAAGGATTAAAACTTTAAAGCATTATATTGTTATTTGTCATAACTTTAACATCGATGGATTATTTAAATCCTTTATCAAGTACAATATCTCACTATTAA

mRNA sequence

TTGCTTTACATAATGTCTGTTTCTTGGTTCTGTTGCTGAGAACCATGATTACTGAATAGTGCCCTCTTTCATTATATAGATGGGAAGACTTTTAAGAAACCTCGACGCCCTTATGAGAAGGAGCGTTTGGATGCAGAACTTAAACTTGTAGGTGAATATGGGCTTCGATGTAAAAGGGAGCTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGTAATAATGCCAGGATGCTTTTAACTCTTGACGAAAAGAATCCCCGTAGGATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATACGGTCTTTTGGATGAGAGTCAAAACAAGCTCGATTATGTCTTGGCTCTTACTGTCGAGAATTTCCTAGAGCGTCGTCTTCAAACTCTCGTGTTCAAGTCTGGAATGGCCAAGTCTATCCACCATGCCAGAGTGCTCATCAGACAGAAGCATATAAGGGTTGGGAGGCAGGTAGTTAACATCCCTTCTTTCATGGTAAGAGTCGATTCCCAGAAGCACATAGACTTCTCTCTCACTAGTCCGTTTGGAGGTGGACGCCCCGGAAGGGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCAGGTGGTGATGGAGATGAAGAAGATGAAGATTGAGTTTCTGACTTAAAACTCATCATCTGAGACAGTAAAGATTAGCCAATGGTCTAAGGTATCTGAGATTAACCTTTATGTCCTATTTCCTCCTCCAGCTAAACCTATCTTAATATTTTTCACTTAGAAATCTTGTTTGTATTTTGGTGGTGGGACTAGTTTTCAATTTTGGACAAGCTTCTCTTCGGACTTAGTTGACATAGTTTTCTTGCCATGATTGGACTTTTTTACTCAAAATTCCTCCGCATCTTGAATGTATTGAGTTGATTTGGTCTAATCTAGCAGCTCAGCTTGTTGTATCTGGAAATGTGATCCGTTTCAAGATTTCAATGAATTTTAATTCCTAGGCTCGCGAGCTCTTGAAATTCAAATCTACATCCAACAGATGAAGGTAGCTAAGGATTAAAACTTTAAAGCATTATATTGTTATTTGTCATAACTTTAACATCGATGGATTATTTAAATCCTTTATCAAGTACAATATCTCACTATTAA

Coding sequence (CDS)

ATGCTTTTAACTCTTGACGAAAAGAATCCCCGTAGGATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATACGGTCTTTTGGATGAGAGTCAAAACAAGCTCGATTATGTCTTGGCTCTTACTGTCGAGAATTTCCTAGAGCGTCGTCTTCAAACTCTCGTGTTCAAGTCTGGAATGGCCAAGTCTATCCACCATGCCAGAGTGCTCATCAGACAGAAGCATATAAGGGTTGGGAGGCAGGTAGTTAACATCCCTTCTTTCATGGTAAGAGTCGATTCCCAGAAGCACATAGACTTCTCTCTCACTAGTCCGTTTGGAGGTGGACGCCCCGGAAGGGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCAGGTGGTGATGGAGATGAAGAAGATGAAGATTGA

Protein sequence

MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED

Homology

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BLAST of Carg01710 vs. NCBI nr
Match: XP_004135180.1 (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_008446334.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_008459594.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_022957390.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022925366.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022987602.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_022973538.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_023552855.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >XP_023535520.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >KGN51904.1 hypothetical protein Csa_5G604980 [Cucumis sativus] >KGN52667.1 hypothetical protein Csa_5G649850 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

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BLAST of Carg01710 vs. NCBI nr
Match: XP_012080241.1 (40S ribosomal protein S9-2 [Jatropha curcas] >XP_021616966.1 40S ribosomal protein S9-2-like [Manihot esculenta] >XP_021677141.1 40S ribosomal protein S9-2 [Hevea brasiliensis] >XP_021651754.1 40S ribosomal protein S9-2 isoform X2 [Hevea brasiliensis] >XP_021651755.1 40S ribosomal protein S9-2 isoform X3 [Hevea brasiliensis] >KDP31233.1 hypothetical protein JCGZ_11609 [Jatropha curcas] >OAY47642.1 hypothetical protein MANES_06G094400 [Manihot esculenta])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

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BLAST of Carg01710 vs. NCBI nr
Match: XP_012067614.1 (40S ribosomal protein S9-2 [Jatropha curcas] >KDP41175.1 hypothetical protein JCGZ_15582 [Jatropha curcas])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

[Close]

BLAST of Carg01710 vs. NCBI nr
Match: KDP41176.1 (hypothetical protein JCGZ_15583 [Jatropha curcas])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 64  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 123

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 124 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 183

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BLAST of Carg01710 vs. NCBI nr
Match: XP_021626664.1 (40S ribosomal protein S9-2 [Manihot esculenta] >OAY39149.1 hypothetical protein MANES_10G071100 [Manihot esculenta])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

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BLAST of Carg01710 vs. TAIR10
Match: AT5G39850.1 (Ribosomal protein S4)

HSP 1 Score: 227.6 bits (579), Expect = 4.6e-60
Identity = 111/119 (93.28%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 121
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNE 179

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BLAST of Carg01710 vs. TAIR10
Match: AT5G15200.1 (Ribosomal protein S4)

HSP 1 Score: 224.2 bits (570), Expect = 5.0e-59
Identity = 109/119 (91.60%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 121
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNE 179

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BLAST of Carg01710 vs. TAIR10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 26/87 (29.89%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 5   LDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 64
           +D  +P RI   + LL ++   G++  ++  L     L+V +F  RRL T++     A+ 
Sbjct: 63  MDPADPFRIQMTDMLLEKLYNMGVI-PTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAEH 122

Query: 65  IHHARVLIRQKHIRVGRQVVNIPSFMV 92
              A   I Q H+RVG + +  P+F+V
Sbjct: 123 HKEAVTYIEQGHVRVGPETITDPAFLV 148

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BLAST of Carg01710 vs. Swiss-Prot
Match: sp|Q9FLF0|RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.2e-59
Identity = 111/119 (93.28%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 121
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNE 179

[Close]

BLAST of Carg01710 vs. Swiss-Prot
Match: sp|Q9LXG1|RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.1e-58
Identity = 109/119 (91.60%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 121
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNE 179

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BLAST of Carg01710 vs. Swiss-Prot
Match: sp|P52810|RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina OX=5145 GN=RPS9 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-48
Identity = 92/117 (78.63%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEK+P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+
Sbjct: 57  LLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGL 116

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRK 119
           AKSIHHARVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK
Sbjct: 117 AKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173

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BLAST of Carg01710 vs. Swiss-Prot
Match: sp|A6QLG5|RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-47
Identity = 93/118 (78.81%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEK+PRR+FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+
Sbjct: 60  LLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGL 119

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 120
           AKSIHHARVLIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN
Sbjct: 120 AKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of Carg01710 vs. Swiss-Prot
Match: sp|P46781|RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3)

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-47
Identity = 93/118 (78.81%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 2   LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 61
           LLTLDEK+PRR+FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+
Sbjct: 60  LLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGL 119

Query: 62  AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 120
           AKSIHHARVLIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN
Sbjct: 120 AKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of Carg01710 vs. TrEMBL
Match: tr|A0A0A0KSN1|A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

[Close]

BLAST of Carg01710 vs. TrEMBL
Match: tr|A0A1S3CA34|A0A1S3CA34_CUCME (40S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

[Close]

BLAST of Carg01710 vs. TrEMBL
Match: tr|B9RUP5|B9RUP5_RICCO (40S ribosomal protein S9, putative OS=Ricinus communis OX=3988 GN=RCOM_0855200 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.7e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

[Close]

BLAST of Carg01710 vs. TrEMBL
Match: tr|A0A067L9K1|A0A067L9K1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15582 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.7e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

[Close]

BLAST of Carg01710 vs. TrEMBL
Match: tr|A0A067K8C2|A0A067K8C2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11609 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.7e-59
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 60
           MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG
Sbjct: 60  MLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSG 119

Query: 61  MAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 120
           MAKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 179

The following BLAST results are available for this feature:

BLAST of Carg01710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135180.1	1.9e-59	100.00	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 PREDICTE...	[more]
XP_012080241.1	4.1e-59	99.17	40S ribosomal protein S9-2 [Jatropha curcas] >XP_021616966.1 40S ribosomal prote...	[more]
XP_012067614.1	4.1e-59	99.17	40S ribosomal protein S9-2 [Jatropha curcas] >KDP41175.1 hypothetical protein JC...	[more]
KDP41176.1	4.1e-59	99.17	hypothetical protein JCGZ_15583 [Jatropha curcas]	[more]
XP_021626664.1	4.1e-59	99.17	40S ribosomal protein S9-2 [Manihot esculenta] >OAY39149.1 hypothetical protein ...	[more]

BLAST of Carg01710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	4.6e-60	93.28	Ribosomal protein S4	[more]
AT5G15200.1	5.0e-59	91.60	Ribosomal protein S4	[more]
AT5G15750.1	2.1e-04	29.89	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]

BLAST of Carg01710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FLF0\|RS92_ARATH	8.2e-59	93.28	40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1	[more]
sp\|Q9LXG1\|RS91_ARATH	9.1e-58	91.60	40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1	[more]
sp\|P52810\|RS9_PODAS	1.7e-48	78.63	40S ribosomal protein S9 OS=Podospora anserina OX=5145 GN=RPS9 PE=3 SV=1	[more]
sp\|A6QLG5\|RS9_BOVIN	1.1e-47	78.81	40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1	[more]
sp\|P46781\|RS9_HUMAN	1.1e-47	78.81	40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3	[more]

BLAST of Carg01710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSN1\|A0A0A0KSN1_CUCSA	1.2e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604980 PE=3 SV=1	[more]
tr\|A0A1S3CA34\|A0A1S3CA34_CUCME	1.2e-59	100.00	40S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1	[more]
tr\|B9RUP5\|B9RUP5_RICCO	2.7e-59	99.17	40S ribosomal protein S9, putative OS=Ricinus communis OX=3988 GN=RCOM_0855200 P...	[more]
tr\|A0A067L9K1\|A0A067L9K1_JATCU	2.7e-59	99.17	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15582 PE=3 SV=1	[more]
tr\|A0A067K8C2\|A0A067K8C2_JATCU	2.7e-59	99.17	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11609 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR018079	Ribosomal_S4_CS
IPR022801	Ribosomal_S4/S9
IPR005710	Ribosomal_S4/S9_euk/arc
IPR036986	S4_RNA-bd_sf
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01710-RA	Carg01710-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 50..121 e-value: 2.0E-5 score: 34.0
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 50..93 e-value: 2.1E-13 score: 49.6
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 50..121 score: 11.142
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 50..94 e-value: 2.39135E-9 score: 49.1702
IPR036986	RNA-binding S4 domain superfamily	GENE3D	G3DSA:3.10.290.10		coord: 49..106 e-value: 8.4E-13 score: 50.3
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAM	TIGR01018	TIGR01018	coord: 3..107 e-value: 1.6E-41 score: 140.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..138
None	No IPR available	PANTHER	PTHR11831:SF16	SUBFAMILY NOT NAMED	coord: 2..137
None	No IPR available	SUPERFAMILY	SSF55174	Alpha-L RNA-binding motif	coord: 3..101
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 2..137
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 48..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01710	Cla010174	Watermelon (97103) v1	carwmB0839
Carg01710	Csa5G604980	Cucumber (Chinese Long) v2	carcuB0860
Carg01710	MELO3C012084	Melon (DHL92) v3.5.1	carmeB0831
Carg01710	ClCG05G024390	Watermelon (Charleston Gray)	carwcgB0813
Carg01710	CSPI05G23610	Wild cucumber (PI 183967)	carcpiB0880
Carg01710	Cucsa.285190	Cucumber (Gy14) v1	carcgyB0966
Carg01710	CmaCh18G011610	Cucurbita maxima (Rimu)	carcmaB1164
Carg01710	CmoCh18G011840	Cucurbita moschata (Rifu)	carcmoB1132
Carg01710	CmoCh04G017280	Cucurbita moschata (Rifu)	carcmoB1138
Carg01710	Lsi04G004360	Bottle gourd (USVL1VR-Ls)	carlsiB764
Carg01710	Cp4.1LG01g12570	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01710	Cp4.1LG09g01780	Cucurbita pepo (Zucchini)	carcpeB1170
Carg01710	CsGy5G023170	Cucumber (Gy14) v2	carcgybB0833
Carg01710	MELO3C012084.2	Melon (DHL92) v3.6.1	carmedB0843
Carg01710	CsaV3_5G032570	Cucumber (Chinese Long) v3	carcucB0884
Carg01710	Cla97C05G106450	Watermelon (97103) v2	carwmbB0875
Carg01710	Bhi07G001289	Wax gourd	carwgoB0980

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01710	Carg17260	Silver-seed gourd	carcarB117

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01710	Cucurbita maxima (Rimu)	carcmaB1170
Carg01710	Watermelon (97103) v2	carwmbB0872
Carg01710	Watermelon (97103) v2	carwmbB0879
Carg01710	Watermelon (97103) v2	carwmbB0882