Carg01411 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01411
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GEM-like protein 4 isoform X2
Location	Cucurbita_argyrosperma_scaffold_004 : 775982 .. 776446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTGGACGGCCATGGCTGACTCACCTCAAAGCTTCATGTTTCAATGTCTCACCATTTATAAGAGTTGGAGGAAGAACATTGATCATCCCCCCTCACTCCTTTGCCTTGTACATTAATTCATACATACAACTAGAAGCAGAAGAAAATGGATGCTTTGATGACACGAGAAGTCGCCGGGATCCTTGTTGGCTCCACGGCGTTTCAGCCGGTTGAGAAGTCGCTGAAGAGACTGTTGCCTGCTCCGATCGGTAGTCAATCTCCCGATGGCGAACCCCGGGCGACAAAACAATGTAAAGCTTCTATTTCTTTTTTTCTTTCCTTGGGTTGATGTCTATGTGTATTTGTTGTGAGGGTGAATGGTGACTGAATGGAGAGAGTTTTGTAAATGTTTGCAGGTAGGGAGGATGCAGTTGTTAGCAGGGGGAGCAAGGTTGGGAGTTTTGCCCATGGAGTTAGAGAACAT

mRNA sequence

TTGGTGGACGGCCATGGCTGACTCACCTCAAAGCTTCATGTTTCAATGTCTCACCATTTATAAGAGTTGGAGGAAGAACATTGATCATCCCCCCTCACTCCTTTGCCTTGTACATTAATTCATACATACAACTAGAAGCAGAAGAAAATGGATGCTTTGATGACACGAGAAGTCGCCGGGATCCTTGTTGGCTCCACGGCGTTTCAGCCGGTTGAGAAGTCGCTGAAGAGACTGTTGCCTGCTCCGATCGGTAGTCAATCTCCCGATGGCGAACCCCGGGCGACAAAACAATGTAGGGAGGATGCAGTTGTTAGCAGGGGGAGCAAGGTTGGGAGTTTTGCCCATGGAGTTAGAGAACAT

Coding sequence (CDS)

ATGGATGCTTTGATGACACGAGAAGTCGCCGGGATCCTTGTTGGCTCCACGGCGTTTCAGCCGGTTGAGAAGTCGCTGAAGAGACTGTTGCCTGCTCCGATCGGTAGTCAATCTCCCGATGGCGAACCCCGGGCGACAAAACAATGTAGGGAGGATGCAGTTGTTAGCAGGGGGAGCAAGGTTGGGAGTTTTGCCCATGGAGTTAGAGAACAT

Protein sequence

MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSKVGSFAHGVREH

Homology

[Close]

BLAST of Carg01411 vs. NCBI nr
Match: XP_022938454.1 (putative GEM-like protein 8 isoform X2 [Cucurbita moschata] >XP_023551580.1 putative GEM-like protein 8 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 7.2e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK
Sbjct: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60

Query: 61 VGSFAHGVREH 72
          VGSFAHGVREH
Sbjct: 61 VGSFAHGVREH 71

[Close]

BLAST of Carg01411 vs. NCBI nr
Match: XP_022938453.1 (GEM-like protein 4 isoform X1 [Cucurbita moschata] >XP_023551579.1 GEM-like protein 4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 7.2e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK
Sbjct: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60

Query: 61 VGSFAHGVREH 72
          VGSFAHGVREH
Sbjct: 61 VGSFAHGVREH 71

[Close]

BLAST of Carg01411 vs. NCBI nr
Match: XP_022993511.1 (GEM-like protein 4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 3.5e-30
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          MDALMTREVAGILVGS AFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK
Sbjct: 1  MDALMTREVAGILVGSMAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60

Query: 61 VGSFAHGVREH 72
          VGSFAHGVREH
Sbjct: 61 VGSFAHGVREH 71

[Close]

BLAST of Carg01411 vs. NCBI nr
Match: XP_022993512.1 (putative GEM-like protein 8 isoform X2 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 3.5e-30
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          MDALMTREVAGILVGS AFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK
Sbjct: 1  MDALMTREVAGILVGSMAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60

Query: 61 VGSFAHGVREH 72
          VGSFAHGVREH
Sbjct: 61 VGSFAHGVREH 71

[Close]

BLAST of Carg01411 vs. NCBI nr
Match: XP_022141576.1 (putative GEM-like protein 8 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MDALMTREVAGILVGS-TAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGS 60
          M+ALM ++VAGI VGS  AF+P EKSLKR+LPAP G QSPDGEPRATKQCRED+VVSR +
Sbjct: 1  MEALMKQDVAGIAVGSLAAFRPFEKSLKRVLPAPAGGQSPDGEPRATKQCREDSVVSREN 60

Query: 61 KVGSFAHGVREH 72
          K+GSF HGV+EH
Sbjct: 61 KLGSFGHGVKEH 72

[Close]

BLAST of Carg01411 vs. TrEMBL
Match: tr|A0A1S3CNI6|A0A1S3CNI6_CUCME (GEM-like protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502800 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.9e-21
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          M+  M REVA I VGST  +PVEKSLKRLLPAP+G QSPD EPRATKQCRED VVSR S 
Sbjct: 1  MEVRMAREVARIPVGSTTLRPVEKSLKRLLPAPVGCQSPDVEPRATKQCREDTVVSRRSM 60

Query: 61 VGSFAHGVREH 72
          VGSFA GVREH
Sbjct: 61 VGSFAQGVREH 71

[Close]

BLAST of Carg01411 vs. TrEMBL
Match: tr|A0A1S3CN23|A0A1S3CN23_CUCME (GEM-like protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502800 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.9e-21
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          M+  M REVA I VGST  +PVEKSLKRLLPAP+G QSPD EPRATKQCRED VVSR S 
Sbjct: 1  MEVRMAREVARIPVGSTTLRPVEKSLKRLLPAPVGCQSPDVEPRATKQCREDTVVSRRSM 60

Query: 61 VGSFAHGVREH 72
          VGSFA GVREH
Sbjct: 61 VGSFAQGVREH 71

[Close]

BLAST of Carg01411 vs. TrEMBL
Match: tr|A0A0A0KQ00|A0A0A0KQ00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G352640 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.9e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MDALMTREVAGILVGSTAFQPVEKSLKRLLPAPIGSQSPDGEPRATKQCREDAVVSRGSK 60
          M+ +M +EVAGI + S  F+PVEKSLKRLLPAP+G QSPDGEPRATKQCRED VV   S 
Sbjct: 1  MEVMMAQEVAGIPISSMTFRPVEKSLKRLLPAPVGCQSPDGEPRATKQCREDTVVGSRSM 60

Query: 61 VGSFAHGVREH 72
          VGSFA GVREH
Sbjct: 61 VGSFAQGVREH 71

The following BLAST results are available for this feature:

BLAST of Carg01411 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938454.1	7.2e-31	100.00	putative GEM-like protein 8 isoform X2 [Cucurbita moschata] >XP_023551580.1 puta...	[more]
XP_022938453.1	7.2e-31	100.00	GEM-like protein 4 isoform X1 [Cucurbita moschata] >XP_023551579.1 GEM-like prot...	[more]
XP_022993511.1	3.5e-30	98.59	GEM-like protein 4 isoform X1 [Cucurbita maxima]	[more]
XP_022993512.1	3.5e-30	98.59	putative GEM-like protein 8 isoform X2 [Cucurbita maxima]	[more]
XP_022141576.1	3.9e-21	75.00	putative GEM-like protein 8 [Momordica charantia]	[more]

BLAST of Carg01411 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg01411 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01411 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNI6\|A0A1S3CNI6_CUCME	9.9e-21	77.46	GEM-like protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502800 PE=4 SV=1	[more]
tr\|A0A1S3CN23\|A0A1S3CN23_CUCME	9.9e-21	77.46	GEM-like protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502800 PE=4 SV=1	[more]
tr\|A0A0A0KQ00\|A0A0A0KQ00_CUCSA	9.9e-21	73.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G352640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01411-RA	Carg01411-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01411	Csa5G352640	Cucumber (Chinese Long) v2	carcuB0847
Carg01411	ClCG01G008070	Watermelon (Charleston Gray)	carwcgB0800
Carg01411	Cucsa.013900	Cucumber (Gy14) v1	carcgyB0950
Carg01411	CmaCh15G007950	Cucurbita maxima (Rimu)	carcmaB1148
Carg01411	CmaCh04G022400	Cucurbita maxima (Rimu)	carcmaB1150
Carg01411	CmoCh04G023420	Cucurbita moschata (Rifu)	carcmoB1121
Carg01411	CmoCh15G008210	Cucurbita moschata (Rifu)	carcmoB1118
Carg01411	Lsi09G008570	Bottle gourd (USVL1VR-Ls)	carlsiB754
Carg01411	Cp4.1LG01g19440	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01411	Cp4.1LG13g05810	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01411	CsGy5G013730	Cucumber (Gy14) v2	carcgybB0820

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01411	Carg17773	Silver-seed gourd	carcarB469

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01411	Wax gourd	carwgoB0962
Carg01411	Wild cucumber (PI 183967)	carcpiB0866
Carg01411	Cucumber (Chinese Long) v3	carcucB0870
Carg01411	Melon (DHL92) v3.5.1	carmeB0821
Carg01411	Melon (DHL92) v3.6.1	carmedB0832
Carg01411	Watermelon (97103) v1	carwmB0831
Carg01411	Watermelon (97103) v2	carwmbB0859
Carg01411	Watermelon (97103) v2	carwmbB0858